Wall clock time and date at job start Tue Mar 31 2020 11:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.94527 * 2 1 4 4 C 1.38125 * 120.05630 * 180.02562 * 3 2 1 5 5 C 1.38755 * 119.94404 * 359.67584 * 4 3 2 6 6 O 1.35898 * 120.05741 * 180.31827 * 5 4 3 7 7 C 1.42901 * 117.00103 * 356.08323 * 6 5 4 8 8 C 1.53002 * 109.47405 * 156.85900 * 7 6 5 9 9 C 1.53001 * 109.46693 * 276.85738 * 7 6 5 10 10 C 1.38719 * 119.88702 * 0.57267 * 5 4 3 11 11 C 1.50693 * 120.02814 * 179.74661 * 10 5 4 12 12 N 1.46899 * 109.47152 * 79.72575 * 11 10 5 13 13 C 1.46846 * 111.00411 * 190.00306 * 12 11 10 14 14 C 1.53029 * 109.51785 * 185.84687 * 13 12 11 15 15 C 1.53126 * 109.27676 * 300.79866 * 14 13 12 16 16 C 1.50698 * 109.57386 * 177.59887 * 15 14 13 17 17 H 1.07999 * 120.00293 * 245.72168 * 16 15 14 18 18 C 1.37886 * 119.99932 * 65.72481 * 16 15 14 19 19 N 1.31516 * 119.99670 * 355.50262 * 18 16 15 20 20 Si 1.86793 * 120.00127 * 175.49866 * 18 16 15 21 21 H 1.48497 * 109.47012 * 94.99912 * 20 18 16 22 22 H 1.48502 * 109.47302 * 215.00105 * 20 18 16 23 23 H 1.48500 * 109.47372 * 335.00033 * 20 18 16 24 24 C 1.53122 * 109.14905 * 57.67402 * 15 14 13 25 25 C 1.46851 * 111.00113 * 314.20972 * 12 11 10 26 26 C 1.38166 * 119.94046 * 359.47404 * 10 5 4 27 27 H 1.08997 * 109.47567 * 269.97837 * 1 2 3 28 28 H 1.09004 * 109.47024 * 29.98333 * 1 2 3 29 29 H 1.09004 * 109.47180 * 149.98073 * 1 2 3 30 30 H 1.07998 * 119.97287 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.02735 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47189 * 36.85873 * 7 6 5 33 33 H 1.08996 * 109.46927 * 59.99431 * 8 7 6 34 34 H 1.08992 * 109.47166 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46914 * 299.99857 * 8 7 6 36 36 H 1.08990 * 109.47171 * 299.99807 * 9 7 6 37 37 H 1.09005 * 109.47204 * 60.00279 * 9 7 6 38 38 H 1.09002 * 109.47200 * 179.97438 * 9 7 6 39 39 H 1.09008 * 109.47010 * 319.72665 * 11 10 5 40 40 H 1.09001 * 109.47738 * 199.72516 * 11 10 5 41 41 H 1.09000 * 109.45721 * 305.85776 * 13 12 11 42 42 H 1.09006 * 109.46475 * 65.83170 * 13 12 11 43 43 H 1.08995 * 109.50785 * 60.75411 * 14 13 12 44 44 H 1.09002 * 109.50881 * 180.87554 * 14 13 12 45 45 H 1.08994 * 109.53579 * 297.76936 * 15 14 13 46 46 H 0.97002 * 119.99668 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.50333 * 182.40174 * 24 15 14 48 48 H 1.08998 * 109.53727 * 62.30247 * 24 15 14 49 49 H 1.09008 * 109.46213 * 294.17772 * 25 12 11 50 50 H 1.08998 * 109.45919 * 54.15305 * 25 12 11 51 51 H 1.08004 * 119.96857 * 180.24754 * 26 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 0.0000 0.0057 6 8 5.6324 -0.0001 0.0118 7 6 6.2816 1.2700 -0.0757 8 6 7.6925 1.1628 0.5065 9 6 6.3661 1.6995 -1.5417 10 6 3.5787 -1.2007 0.0005 11 6 4.3302 -2.5068 0.0015 12 7 4.7825 -2.8105 1.3658 13 6 5.7150 -3.9449 1.3709 14 6 6.0502 -4.3246 2.8149 15 6 6.6789 -3.1203 3.5214 16 6 6.9577 -3.4683 4.9609 17 1 6.4236 -2.9629 5.7519 18 6 7.8947 -4.4321 5.2681 19 7 8.4809 -5.1098 4.3054 20 14 8.3316 -4.7752 7.0515 21 1 7.5177 -5.9126 7.5505 22 1 9.7733 -5.1168 7.1512 23 1 8.0510 -3.5688 7.8708 24 6 5.7073 -1.9384 3.4598 25 6 5.3818 -1.6278 1.9971 26 6 2.1970 -1.1979 0.0001 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6559 2.1328 0.0004 31 1 4.1171 2.1370 -0.0010 32 1 5.7115 2.0090 0.4872 33 1 8.2626 0.4237 -0.0563 34 1 8.1877 2.1314 0.4393 35 1 7.6322 0.8567 1.5509 36 1 6.9363 0.9605 -2.1046 37 1 5.3610 1.7759 -1.9565 38 1 6.8609 2.6685 -1.6085 39 1 5.1940 -2.4295 -0.6589 40 1 3.6746 -3.3037 -0.3497 41 1 5.2544 -4.7958 0.8691 42 1 6.6293 -3.6658 0.8471 43 1 5.1383 -4.6169 3.3355 44 1 6.7545 -5.1566 2.8184 45 1 7.6110 -2.8518 3.0244 46 1 9.1398 -5.7881 4.5215 47 1 6.1664 -1.0653 3.9237 48 1 4.7900 -2.1925 3.9908 49 1 6.2976 -1.3596 1.4701 50 1 4.6790 -0.7959 1.9503 51 1 1.6556 -2.1325 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232397057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:58 Heat of formation + Delta-G solvation = -24.561195 kcal Electronic energy + Delta-G solvation = -28124.782457 eV Core-core repulsion = 24602.630778 eV Total energy + Delta-G solvation = -3522.151679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.66773 -38.11433 -37.71357 -34.36426 -33.25328 -31.98510 -31.52215 -30.46423 -29.47231 -27.44623 -26.61871 -26.20031 -24.31955 -23.34826 -21.91123 -21.41276 -20.59398 -20.15061 -18.44277 -18.07262 -16.41523 -16.13482 -15.71727 -15.20556 -14.91679 -14.52319 -14.37294 -14.22283 -13.98363 -13.66473 -13.58203 -13.18328 -12.93169 -12.72442 -12.64962 -12.43416 -12.33885 -12.23379 -12.17396 -11.91577 -11.59901 -11.56270 -11.28589 -11.16969 -11.14472 -10.87265 -10.73224 -10.61545 -10.44115 -10.28311 -9.99427 -9.90086 -9.32071 -8.82035 -8.78770 -8.62246 -8.20858 -7.96878 -7.42281 -5.90603 -3.94334 1.37631 1.47034 3.24071 3.35310 3.42154 3.46258 3.72705 4.51349 4.63873 4.73719 4.76029 4.80578 4.86773 4.89487 5.02547 5.20848 5.32907 5.34413 5.40095 5.42779 5.56294 5.56538 5.59896 5.70724 5.73334 5.75562 5.87404 5.92019 5.97810 5.99641 6.13817 6.14365 6.16579 6.30321 6.33998 6.41478 6.53031 6.58960 6.66808 6.72680 6.81501 6.88440 7.02344 7.21437 7.29212 7.51661 7.55317 7.75649 7.85391 7.95405 8.15593 8.23516 8.58188 9.10052 9.69317 11.16370 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003755 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.817534 B = 7454.330017 C = 8377.101510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.085 4.085 4 C -0.212 4.212 5 C 0.139 3.861 6 O -0.298 6.298 7 C 0.074 3.926 8 C -0.150 4.150 9 C -0.177 4.177 10 C -0.103 4.103 11 C 0.100 3.900 12 N -0.528 5.528 13 C 0.059 3.941 14 C -0.101 4.101 15 C 0.050 3.950 16 C -0.508 4.508 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.107 4.107 25 C 0.062 3.938 26 C -0.066 4.066 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.258 0.742 47 H 0.044 0.956 48 H 0.051 0.949 49 H 0.039 0.961 50 H 0.056 0.944 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 13.407 -13.341 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C -0.103 4.103 4 C -0.231 4.231 5 C 0.093 3.907 6 O -0.211 6.211 7 C 0.018 3.982 8 C -0.207 4.207 9 C -0.235 4.235 10 C -0.104 4.104 11 C -0.027 4.027 12 N -0.253 5.253 13 C -0.069 4.069 14 C -0.139 4.139 15 C 0.031 3.969 16 C -0.547 4.547 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.145 4.145 25 C -0.066 4.066 26 C -0.084 4.084 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.040 0.960 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.100 12.962 -13.078 21.001 hybrid contribution 0.969 0.263 0.478 1.112 sum -9.131 13.225 -12.600 20.421 Atomic orbital electron populations 1.20680 0.91325 1.02218 1.02055 1.19750 0.95994 0.92983 1.04347 1.20722 0.93224 0.97416 0.98964 1.21156 0.95224 0.96933 1.09757 1.18757 0.82790 0.93486 0.95644 1.86385 1.15883 1.31384 1.87486 1.22426 0.94469 0.84847 0.96447 1.21855 0.93674 1.02635 1.02525 1.22356 1.02745 1.01994 0.96377 1.19247 0.93300 0.93075 1.04745 1.20896 0.97500 0.92718 0.91601 1.62185 1.40843 1.06934 1.15378 1.22253 0.92452 0.91700 1.00469 1.21631 0.99855 1.01862 0.90538 1.18670 0.92754 0.90025 0.95443 1.21235 1.20943 1.20359 0.92133 0.92874 1.24968 0.96245 0.95979 0.96810 1.69915 1.27981 1.23951 1.31262 0.86660 0.77546 0.78457 0.85806 1.20866 1.21336 1.19980 1.21700 1.00012 0.99501 0.93238 1.22311 0.96953 0.91228 0.96071 1.20749 0.92318 0.97743 0.97637 0.91527 0.92084 0.91812 0.86314 0.85580 0.91053 0.91450 0.90828 0.91001 0.91515 0.92130 0.91277 0.94320 0.90772 0.92878 0.95960 0.93900 0.89578 0.96005 0.93227 0.93694 0.93031 0.94267 0.92596 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.57 16 2 C -0.13 -1.52 5.88 -104.60 -0.62 -2.14 16 3 C -0.08 -0.96 9.69 -39.60 -0.38 -1.35 16 4 C -0.21 -2.60 8.36 -39.43 -0.33 -2.93 16 5 C 0.14 1.99 4.65 -39.21 -0.18 1.81 16 6 O -0.30 -4.34 6.05 -19.42 -0.12 -4.46 16 7 C 0.07 0.84 2.87 -26.73 -0.08 0.76 16 8 C -0.15 -1.66 9.56 37.16 0.36 -1.31 16 9 C -0.18 -1.66 9.27 37.16 0.34 -1.32 16 10 C -0.10 -1.53 4.57 -104.47 -0.48 -2.01 16 11 C 0.10 1.62 5.25 -4.98 -0.03 1.60 16 12 N -0.53 -10.16 4.80 -236.11 -1.13 -11.30 16 13 C 0.06 1.21 5.42 -3.84 -0.02 1.19 16 14 C -0.10 -2.46 5.18 -26.65 -0.14 -2.60 16 15 C 0.05 1.28 2.10 -91.64 -0.19 1.09 16 16 C -0.51 -14.38 8.49 -34.44 -0.29 -14.67 16 17 H 0.05 1.50 7.75 -52.49 -0.41 1.09 16 18 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 19 N -0.89 -25.95 11.61 55.43 0.64 -25.31 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.11 -2.41 5.32 -26.65 -0.14 -2.55 16 25 C 0.06 1.22 3.85 -3.83 -0.01 1.20 16 26 C -0.07 -0.87 9.32 -39.61 -0.37 -1.24 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.30 5.71 -52.49 -0.30 1.00 16 32 H 0.07 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.57 7.37 -51.93 -0.38 0.19 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.65 7.80 -51.92 -0.40 0.24 16 40 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 41 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 2.32 6.44 -51.93 -0.33 1.98 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 47 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.04 0.80 6.56 -51.92 -0.34 0.46 16 50 H 0.06 1.07 5.15 -51.93 -0.27 0.80 16 51 H 0.13 1.51 8.04 -52.48 -0.42 1.09 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -30.18 387.49 -11.14 -41.32 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -9.05 Total: 0.60 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.30 Total: -23.40 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.49 Total: -36.61 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.12 Total: -4.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.18 -11.14 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232397057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.759 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds