Wall clock time and date at job start Tue Mar 31 2020 11:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38288 * 119.94527 * 2 1 4 4 C 1.38125 * 120.05630 * 180.02562 * 3 2 1 5 5 C 1.38755 * 119.94404 * 359.67584 * 4 3 2 6 6 O 1.35898 * 120.05741 * 180.31827 * 5 4 3 7 7 C 1.42901 * 117.00103 * 356.08323 * 6 5 4 8 8 C 1.53002 * 109.47405 * 156.85900 * 7 6 5 9 9 C 1.53001 * 109.46693 * 276.85738 * 7 6 5 10 10 C 1.38719 * 119.88702 * 0.57267 * 5 4 3 11 11 C 1.50693 * 120.02814 * 179.74661 * 10 5 4 12 12 N 1.46899 * 109.47152 * 79.72575 * 11 10 5 13 13 C 1.46846 * 111.00411 * 190.00306 * 12 11 10 14 14 C 1.53029 * 109.51785 * 185.84687 * 13 12 11 15 15 C 1.53126 * 109.27676 * 300.79866 * 14 13 12 16 16 C 1.50698 * 109.57386 * 177.59887 * 15 14 13 17 17 H 1.07999 * 120.00293 * 245.72168 * 16 15 14 18 18 C 1.37886 * 119.99932 * 65.72481 * 16 15 14 19 19 N 1.31516 * 119.99670 * 355.50262 * 18 16 15 20 20 Si 1.86793 * 120.00127 * 175.49866 * 18 16 15 21 21 H 1.48497 * 109.47012 * 94.99912 * 20 18 16 22 22 H 1.48502 * 109.47302 * 215.00105 * 20 18 16 23 23 H 1.48500 * 109.47372 * 335.00033 * 20 18 16 24 24 C 1.53122 * 109.14905 * 57.67402 * 15 14 13 25 25 C 1.46851 * 111.00113 * 314.20972 * 12 11 10 26 26 C 1.38166 * 119.94046 * 359.47404 * 10 5 4 27 27 H 1.08997 * 109.47567 * 269.97837 * 1 2 3 28 28 H 1.09004 * 109.47024 * 29.98333 * 1 2 3 29 29 H 1.09004 * 109.47180 * 149.98073 * 1 2 3 30 30 H 1.07998 * 119.97287 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.02735 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47189 * 36.85873 * 7 6 5 33 33 H 1.08996 * 109.46927 * 59.99431 * 8 7 6 34 34 H 1.08992 * 109.47166 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46914 * 299.99857 * 8 7 6 36 36 H 1.08990 * 109.47171 * 299.99807 * 9 7 6 37 37 H 1.09005 * 109.47204 * 60.00279 * 9 7 6 38 38 H 1.09002 * 109.47200 * 179.97438 * 9 7 6 39 39 H 1.09008 * 109.47010 * 319.72665 * 11 10 5 40 40 H 1.09001 * 109.47738 * 199.72516 * 11 10 5 41 41 H 1.09000 * 109.45721 * 305.85776 * 13 12 11 42 42 H 1.09006 * 109.46475 * 65.83170 * 13 12 11 43 43 H 1.08995 * 109.50785 * 60.75411 * 14 13 12 44 44 H 1.09002 * 109.50881 * 180.87554 * 14 13 12 45 45 H 1.08994 * 109.53579 * 297.76936 * 15 14 13 46 46 H 0.97002 * 119.99668 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.50333 * 182.40174 * 24 15 14 48 48 H 1.08998 * 109.53727 * 62.30247 * 24 15 14 49 49 H 1.09008 * 109.46213 * 294.17772 * 25 12 11 50 50 H 1.08998 * 109.45919 * 54.15305 * 25 12 11 51 51 H 1.08004 * 119.96857 * 180.24754 * 26 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 0.0000 0.0057 6 8 5.6324 -0.0001 0.0118 7 6 6.2816 1.2700 -0.0757 8 6 7.6925 1.1628 0.5065 9 6 6.3661 1.6995 -1.5417 10 6 3.5787 -1.2007 0.0005 11 6 4.3302 -2.5068 0.0015 12 7 4.7825 -2.8105 1.3658 13 6 5.7150 -3.9449 1.3709 14 6 6.0502 -4.3246 2.8149 15 6 6.6789 -3.1203 3.5214 16 6 6.9577 -3.4683 4.9609 17 1 6.4236 -2.9629 5.7519 18 6 7.8947 -4.4321 5.2681 19 7 8.4809 -5.1098 4.3054 20 14 8.3316 -4.7752 7.0515 21 1 7.5177 -5.9126 7.5505 22 1 9.7733 -5.1168 7.1512 23 1 8.0510 -3.5688 7.8708 24 6 5.7073 -1.9384 3.4598 25 6 5.3818 -1.6278 1.9971 26 6 2.1970 -1.1979 0.0001 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6559 2.1328 0.0004 31 1 4.1171 2.1370 -0.0010 32 1 5.7115 2.0090 0.4872 33 1 8.2626 0.4237 -0.0563 34 1 8.1877 2.1314 0.4393 35 1 7.6322 0.8567 1.5509 36 1 6.9363 0.9605 -2.1046 37 1 5.3610 1.7759 -1.9565 38 1 6.8609 2.6685 -1.6085 39 1 5.1940 -2.4295 -0.6589 40 1 3.6746 -3.3037 -0.3497 41 1 5.2544 -4.7958 0.8691 42 1 6.6293 -3.6658 0.8471 43 1 5.1383 -4.6169 3.3355 44 1 6.7545 -5.1566 2.8184 45 1 7.6110 -2.8518 3.0244 46 1 9.1398 -5.7881 4.5215 47 1 6.1664 -1.0653 3.9237 48 1 4.7900 -2.1925 3.9908 49 1 6.2976 -1.3596 1.4701 50 1 4.6790 -0.7959 1.9503 51 1 1.6556 -2.1325 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232397057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:57 Heat of formation + Delta-G solvation = -39.848720 kcal Electronic energy + Delta-G solvation = -28125.445374 eV Core-core repulsion = 24602.630778 eV Total energy + Delta-G solvation = -3522.814596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69949 -39.55546 -38.83833 -36.01236 -34.41130 -33.57960 -32.41849 -31.99329 -31.20140 -28.32065 -28.17161 -27.14886 -25.98990 -24.43695 -23.51826 -23.10159 -21.58381 -21.23228 -20.31735 -19.02797 -18.47675 -17.15264 -17.12033 -16.54341 -16.20589 -16.11121 -15.43236 -15.35037 -15.31644 -14.90014 -14.76089 -14.50242 -14.28793 -14.14964 -14.03360 -13.56691 -13.50789 -13.34370 -13.18983 -13.06276 -12.91979 -12.81991 -12.72972 -12.63353 -12.43332 -12.28806 -12.16380 -12.07778 -11.98489 -11.83539 -11.47451 -11.35956 -11.31193 -10.74662 -10.68533 -10.35865 -9.82014 -9.19350 -8.73367 -8.08273 -6.20736 0.40549 0.52347 1.40575 1.40944 1.52259 2.32556 2.44181 2.72635 3.18882 3.30257 3.75126 3.82500 3.88339 3.96237 4.04354 4.19953 4.24214 4.29556 4.35231 4.38532 4.47479 4.50854 4.59346 4.65243 4.66724 4.73951 4.78684 4.81017 4.82434 4.87403 4.89868 4.93005 4.96184 5.05085 5.11860 5.15298 5.20804 5.24103 5.24990 5.26620 5.35180 5.44239 5.53769 5.57368 5.61922 5.74833 5.97968 5.99466 6.02360 6.31435 6.34088 6.41509 6.58386 6.90399 7.46492 8.97491 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003755 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.817534 B = 7454.330017 C = 8377.101510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.133 4.133 3 C -0.083 4.083 4 C -0.213 4.213 5 C 0.122 3.878 6 O -0.323 6.323 7 C 0.068 3.932 8 C -0.148 4.148 9 C -0.169 4.169 10 C -0.129 4.129 11 C 0.106 3.894 12 N -0.533 5.533 13 C 0.070 3.930 14 C -0.090 4.090 15 C 0.049 3.951 16 C -0.534 4.534 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.099 4.099 25 C 0.080 3.920 26 C -0.074 4.074 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.010 0.990 43 H 0.032 0.968 44 H 0.057 0.943 45 H -0.012 1.012 46 H 0.260 0.740 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.030 0.970 50 H 0.069 0.931 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 15.176 -13.704 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C -0.101 4.101 4 C -0.232 4.232 5 C 0.076 3.924 6 O -0.238 6.238 7 C 0.012 3.988 8 C -0.205 4.205 9 C -0.226 4.226 10 C -0.130 4.130 11 C -0.021 4.021 12 N -0.258 5.258 13 C -0.058 4.058 14 C -0.129 4.129 15 C 0.031 3.969 16 C -0.572 4.572 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.137 4.137 25 C -0.047 4.047 26 C -0.093 4.093 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.028 0.972 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.006 0.994 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.087 0.913 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.876 14.741 -13.451 23.222 hybrid contribution 1.496 -0.238 0.561 1.615 sum -10.380 14.503 -12.891 22.006 Atomic orbital electron populations 1.20728 0.89190 1.03536 1.02650 1.20113 0.97597 0.92523 1.03122 1.21127 0.93018 0.98584 0.97366 1.21410 0.95845 0.96884 1.09047 1.18948 0.82811 0.94148 0.96469 1.86336 1.16379 1.33308 1.87767 1.22644 0.94091 0.84097 0.97932 1.21875 0.94137 1.03791 1.00723 1.22290 1.02879 1.02819 0.94643 1.19249 0.94089 0.92489 1.07208 1.20879 0.97502 0.94528 0.89212 1.62138 1.39681 1.06172 1.17783 1.22032 0.92716 0.93290 0.97750 1.21392 0.98312 1.00290 0.92890 1.18606 0.92153 0.91841 0.94333 1.21558 1.21604 1.20829 0.93168 0.93316 1.25751 0.96027 0.95646 1.01129 1.70049 1.28201 1.24199 1.33266 0.85615 0.77406 0.78461 0.80610 1.20164 1.20721 1.19346 1.21581 0.98626 0.98099 0.95422 1.22067 0.96922 0.91842 0.93869 1.20948 0.91762 0.98989 0.97560 0.91157 0.90302 0.91084 0.83433 0.83787 0.89898 0.92744 0.87921 0.93345 0.92564 0.92087 0.88864 0.95311 0.89196 0.90670 0.97186 0.94898 0.92433 0.99422 0.93077 0.93657 0.93727 0.95196 0.91316 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.01 71.23 0.71 -0.79 16 2 C -0.13 -2.76 5.88 -19.85 -0.12 -2.87 16 3 C -0.08 -1.62 9.69 22.25 0.22 -1.40 16 4 C -0.21 -4.74 8.36 22.37 0.19 -4.56 16 5 C 0.12 3.38 4.65 22.51 0.10 3.48 16 6 O -0.32 -9.42 6.05 -92.40 -0.56 -9.98 16 7 C 0.07 1.47 2.87 30.60 0.09 1.56 16 8 C -0.15 -3.29 9.56 71.98 0.69 -2.60 16 9 C -0.17 -2.90 9.27 71.98 0.67 -2.23 16 10 C -0.13 -3.75 4.57 -19.77 -0.09 -3.84 16 11 C 0.11 3.39 5.25 85.56 0.45 3.84 16 12 N -0.53 -20.63 4.80 -900.93 -4.32 -24.96 16 13 C 0.07 2.96 5.42 86.32 0.47 3.43 16 14 C -0.09 -4.60 5.18 30.65 0.16 -4.44 16 15 C 0.05 2.66 2.10 -11.46 -0.02 2.63 16 16 C -0.53 -31.06 8.49 25.60 0.22 -30.84 16 17 H 0.05 2.81 7.75 -2.91 -0.02 2.78 16 18 C 0.01 0.74 5.36 84.66 0.45 1.20 16 19 N -0.92 -54.86 11.61 21.45 0.25 -54.61 16 20 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.10 -4.61 5.32 30.65 0.16 -4.45 16 25 C 0.08 3.24 3.85 86.32 0.33 3.57 16 26 C -0.07 -1.83 9.32 22.25 0.21 -1.62 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 29 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.14 2.57 5.71 -2.91 -0.02 2.55 16 32 H 0.08 1.58 5.97 -2.39 -0.01 1.57 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.04 7.37 -2.38 -0.02 1.03 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.03 0.98 7.80 -2.38 -0.02 0.96 16 40 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 41 H 0.07 2.84 8.12 -2.39 -0.02 2.82 16 42 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 3.24 6.44 -2.39 -0.02 3.22 16 45 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 46 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 47 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.03 1.27 6.56 -2.38 -0.02 1.26 16 50 H 0.07 2.62 5.15 -2.39 -0.01 2.61 16 51 H 0.14 2.99 8.04 -2.91 -0.02 2.96 16 Total: -1.00 -66.76 387.49 3.15 -63.60 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.88 Total: 18.77 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 4.88 Total: -39.94 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -4.08 Total: -79.56 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.56 Total: -9.98 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.76 3.15 -63.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232397057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.756 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds