Wall clock time and date at job start Tue Mar 31 2020 11:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38292 * 119.94183 * 2 1 4 4 C 1.38128 * 120.05056 * 179.97438 * 3 2 1 5 5 C 1.38750 * 119.94642 * 359.81940 * 4 3 2 6 6 O 1.35901 * 120.05538 * 180.23272 * 5 4 3 7 7 C 1.42896 * 116.99931 * 5.48639 * 6 5 4 8 8 C 1.53001 * 109.47055 * 154.98230 * 7 6 5 9 9 C 1.53003 * 109.47237 * 274.97969 * 7 6 5 10 10 C 1.38710 * 119.88677 * 0.43223 * 5 4 3 11 11 C 1.50698 * 120.02492 * 179.79435 * 10 5 4 12 12 N 1.46905 * 109.47255 * 79.72689 * 11 10 5 13 13 C 1.46853 * 110.99656 * 66.04476 * 12 11 10 14 14 C 1.53041 * 109.52045 * 185.83946 * 13 12 11 15 15 C 1.53116 * 109.28038 * 300.82326 * 14 13 12 16 16 C 1.53121 * 109.16362 * 57.65180 * 15 14 13 17 17 H 1.08998 * 109.49773 * 62.32809 * 16 15 14 18 18 C 1.50697 * 109.50330 * 182.40567 * 16 15 14 19 19 H 1.07994 * 119.99789 * 120.00190 * 18 16 15 20 20 C 1.37878 * 119.99790 * 300.00220 * 18 16 15 21 21 N 1.31504 * 120.00299 * 359.97438 * 20 18 16 22 22 Si 1.86806 * 119.99604 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47081 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47121 * 119.99910 * 22 20 18 25 25 H 1.48492 * 109.46927 * 239.99883 * 22 20 18 26 26 C 1.46841 * 111.00127 * 190.25531 * 12 11 10 27 27 C 1.38162 * 119.94652 * 359.52225 * 10 5 4 28 28 H 1.09003 * 109.47000 * 270.01799 * 1 2 3 29 29 H 1.09001 * 109.47271 * 30.01943 * 1 2 3 30 30 H 1.08997 * 109.47292 * 150.01875 * 1 2 3 31 31 H 1.07999 * 119.97263 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.02288 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47493 * 34.97913 * 7 6 5 34 34 H 1.08991 * 109.47326 * 59.99830 * 8 7 6 35 35 H 1.09004 * 109.47196 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.46810 * 299.99483 * 8 7 6 37 37 H 1.08996 * 109.47267 * 180.02562 * 9 7 6 38 38 H 1.09000 * 109.46833 * 300.00347 * 9 7 6 39 39 H 1.09005 * 109.46769 * 59.99671 * 9 7 6 40 40 H 1.09002 * 109.47739 * 319.72820 * 11 10 5 41 41 H 1.09001 * 109.47455 * 199.72464 * 11 10 5 42 42 H 1.08995 * 109.46149 * 65.82607 * 13 12 11 43 43 H 1.09003 * 109.46295 * 305.85443 * 13 12 11 44 44 H 1.09001 * 109.50023 * 60.76407 * 14 13 12 45 45 H 1.08997 * 109.49822 * 180.87819 * 14 13 12 46 46 H 1.08998 * 109.51984 * 177.56181 * 15 14 13 47 47 H 1.09004 * 109.51778 * 297.68427 * 15 14 13 48 48 H 0.97003 * 120.00341 * 179.97438 * 21 20 18 49 49 H 1.08993 * 109.46581 * 54.14475 * 26 12 11 50 50 H 1.09007 * 109.46487 * 294.17665 * 26 12 11 51 51 H 1.07999 * 119.97244 * 180.24751 * 27 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0049 6 8 5.6324 0.0000 0.0102 7 6 6.2807 1.2676 0.1327 8 6 7.6746 1.0717 0.7324 9 6 6.4061 1.9121 -1.2492 10 6 3.5787 -1.2005 -0.0004 11 6 4.3303 -2.5067 -0.0004 12 7 4.7835 -2.8110 1.3635 13 6 3.6426 -3.0643 2.2527 14 6 4.1418 -3.2331 3.6895 15 6 5.1281 -4.4029 3.7479 16 6 6.2818 -4.1365 2.7771 17 1 6.8157 -3.2373 3.0845 18 6 7.2270 -5.3102 2.7847 19 1 7.4120 -5.8604 1.8740 20 6 7.8555 -5.6816 3.9544 21 7 7.6305 -5.0113 5.0632 22 14 9.0276 -7.1361 3.9636 23 1 9.1080 -7.7157 2.5988 24 1 10.3759 -6.6825 4.3895 25 1 8.5302 -8.1666 4.9100 26 6 5.7206 -3.9414 1.3667 27 6 2.1971 -1.1979 0.0000 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6559 2.1328 -0.0004 32 1 4.1171 2.1371 0.0010 33 1 5.6929 1.9149 0.7835 34 1 8.2624 0.4244 0.0817 35 1 8.1693 2.0385 0.8255 36 1 7.5852 0.6126 1.7169 37 1 6.9009 2.8787 -1.1558 38 1 6.9939 1.2647 -1.9000 39 1 5.4130 2.0516 -1.6765 40 1 5.1937 -2.4292 -0.6613 41 1 3.6745 -3.3034 -0.3515 42 1 3.1309 -3.9734 1.9369 43 1 2.9510 -2.2231 2.2050 44 1 4.6416 -2.3193 4.0108 45 1 3.2965 -3.4366 4.3468 46 1 5.5191 -4.4993 4.7608 47 1 4.6180 -5.3238 3.4651 48 1 8.0724 -5.2728 5.8862 49 1 6.5383 -3.7374 0.6755 50 1 5.1991 -4.8465 1.0551 51 1 1.6557 -2.1324 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232397585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:24 Heat of formation + Delta-G solvation = -30.452300 kcal Electronic energy + Delta-G solvation = -27775.386795 eV Core-core repulsion = 24252.979659 eV Total energy + Delta-G solvation = -3522.407136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.36860 -38.26010 -37.59047 -34.22425 -33.22707 -32.08842 -31.49350 -30.55511 -29.60784 -27.36787 -26.47593 -25.57421 -24.84596 -23.07437 -22.04015 -21.44031 -20.65115 -20.04044 -18.48255 -17.98224 -16.32437 -16.09174 -15.42758 -15.18768 -14.91824 -14.54166 -14.43349 -14.18704 -13.82553 -13.66115 -13.44970 -13.20252 -13.01042 -12.74124 -12.63823 -12.47294 -12.33459 -12.24278 -12.03106 -11.96510 -11.73284 -11.55109 -11.38075 -11.12355 -10.94978 -10.91642 -10.63090 -10.60978 -10.51882 -10.39661 -10.01300 -9.75712 -9.38811 -8.98125 -8.74221 -8.60828 -8.23908 -7.82678 -7.47820 -5.91386 -3.97085 1.40311 1.54007 3.33310 3.35165 3.41235 3.45184 3.79086 4.47362 4.71692 4.76195 4.82222 4.86953 4.90638 4.98521 5.07489 5.24672 5.34286 5.38613 5.39201 5.50159 5.55925 5.63114 5.67568 5.70781 5.77524 5.79850 5.82601 5.92386 5.95174 5.99418 6.06386 6.18070 6.23939 6.25696 6.35626 6.43022 6.48709 6.58345 6.62925 6.68319 6.83159 6.85061 6.93121 7.07948 7.31789 7.49913 7.65358 7.80470 7.83919 7.95940 8.17968 8.25904 8.56358 9.07466 9.66774 11.14508 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.003775 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.496416 B = 7415.157325 C = 8732.147716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.086 4.086 4 C -0.213 4.213 5 C 0.153 3.847 6 O -0.290 6.290 7 C 0.078 3.922 8 C -0.149 4.149 9 C -0.179 4.179 10 C -0.098 4.098 11 C 0.103 3.897 12 N -0.525 5.525 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.110 4.110 16 C 0.056 3.944 17 H 0.034 0.966 18 C -0.512 4.512 19 H 0.053 0.947 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.070 3.930 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.019 0.981 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.028 0.972 48 H 0.258 0.742 49 H 0.058 0.942 50 H 0.016 0.984 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 14.490 -10.846 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.232 4.232 5 C 0.107 3.893 6 O -0.203 6.203 7 C 0.022 3.978 8 C -0.206 4.206 9 C -0.237 4.237 10 C -0.099 4.099 11 C -0.025 4.025 12 N -0.250 5.250 13 C -0.065 4.065 14 C -0.153 4.153 15 C -0.148 4.148 16 C 0.037 3.963 17 H 0.052 0.948 18 C -0.551 4.551 19 H 0.071 0.929 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.057 4.057 27 C -0.096 4.096 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.034 0.966 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.540 14.723 -10.500 20.446 hybrid contribution 0.129 -1.222 -0.200 1.245 sum -9.411 13.501 -10.700 19.630 Atomic orbital electron populations 1.20674 0.91436 1.02190 1.01945 1.19699 0.95868 0.92968 1.04719 1.20706 0.93271 0.97308 0.99105 1.21223 0.95214 0.97044 1.09727 1.18741 0.82780 0.93101 0.94719 1.86267 1.15686 1.31304 1.86995 1.22386 0.94611 0.84275 0.96568 1.21828 0.93922 1.02359 1.02459 1.22398 1.02706 1.01119 0.97436 1.19215 0.92710 0.93572 1.04446 1.20812 0.97818 0.91647 0.92233 1.61977 1.15237 1.41562 1.06195 1.22042 0.92152 0.97919 0.94405 1.21653 0.98834 1.01041 0.93813 1.21642 0.95165 0.93610 1.04344 1.18647 0.92639 0.96896 0.88079 0.94799 1.21205 1.24997 1.13926 0.94929 0.92853 1.24925 0.96632 0.96591 0.95688 1.69905 1.43212 1.40004 0.99629 0.86598 0.80973 0.82830 0.77948 1.19877 1.21095 1.21163 1.22288 0.93437 0.88509 1.01426 1.20766 0.92534 0.97607 0.98693 0.91640 0.92065 0.91924 0.86398 0.85625 0.91305 0.91417 0.91071 0.90941 0.91332 0.91447 0.92125 0.90159 0.95109 0.96280 0.92357 0.92304 0.93807 0.89241 0.95295 0.93215 0.92314 0.96571 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.13 -1.57 5.88 -104.60 -0.62 -2.18 16 3 C -0.09 -0.99 9.69 -39.60 -0.38 -1.37 16 4 C -0.21 -2.68 8.25 -39.43 -0.33 -3.00 16 5 C 0.15 2.28 6.57 -39.22 -0.26 2.02 16 6 O -0.29 -4.47 9.04 -19.43 -0.18 -4.64 16 7 C 0.08 0.92 2.84 -26.73 -0.08 0.85 16 8 C -0.15 -1.72 9.56 37.16 0.36 -1.36 16 9 C -0.18 -1.71 9.17 37.16 0.34 -1.37 16 10 C -0.10 -1.50 4.60 -104.48 -0.48 -1.98 16 11 C 0.10 1.72 4.76 -4.97 -0.02 1.70 16 12 N -0.53 -10.31 4.65 -236.11 -1.10 -11.41 16 13 C 0.06 1.18 5.26 -3.83 -0.02 1.16 16 14 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 15 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 16 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 17 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -14.29 8.56 -34.44 -0.29 -14.59 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.71 11.35 55.43 0.63 -25.08 16 22 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 C 0.07 1.56 4.68 -3.84 -0.02 1.54 16 27 C -0.08 -1.03 8.22 -39.61 -0.33 -1.36 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.33 5.43 -52.48 -0.29 1.05 16 33 H 0.07 0.76 6.31 -51.93 -0.33 0.44 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.58 6.92 -51.93 -0.36 0.22 16 40 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 41 H 0.03 0.49 7.98 -51.93 -0.41 0.07 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.02 6.31 -51.93 -0.33 0.69 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.12 1.49 8.04 -52.49 -0.42 1.07 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -29.83 393.48 -11.25 -41.08 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -9.15 Total: 0.61 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.36 Total: -23.00 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.47 Total: -36.49 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.18 Total: -4.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.83 -11.25 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232397585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds