Wall clock time and date at job start Tue Mar 31 2020 11:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.94271 * 2 1 4 4 C 1.38120 * 120.05445 * 180.02562 * 3 2 1 5 5 C 1.38760 * 119.94396 * 359.76449 * 4 3 2 6 6 O 1.35905 * 120.05262 * 180.27850 * 5 4 3 7 7 C 1.42895 * 117.00019 * 5.31245 * 6 5 4 8 8 C 1.53008 * 109.46749 * 155.22371 * 7 6 5 9 9 C 1.53001 * 109.47311 * 275.21713 * 7 6 5 10 10 C 1.38704 * 119.88908 * 0.48581 * 5 4 3 11 11 C 1.50691 * 120.02873 * 179.78863 * 10 5 4 12 12 N 1.46904 * 109.47084 * 79.72896 * 11 10 5 13 13 C 1.46849 * 110.99623 * 294.20921 * 12 11 10 14 14 C 1.53039 * 109.52410 * 174.15891 * 13 12 11 15 15 C 1.53125 * 109.27384 * 59.18184 * 14 13 12 16 16 C 1.53121 * 109.15928 * 302.34234 * 15 14 13 17 17 H 1.09000 * 109.50271 * 297.71541 * 16 15 14 18 18 C 1.50700 * 109.50072 * 177.59964 * 16 15 14 19 19 H 1.07994 * 119.99779 * 240.19401 * 18 16 15 20 20 C 1.37882 * 119.99886 * 60.20189 * 18 16 15 21 21 N 1.31511 * 120.00337 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99721 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47358 * 59.99334 * 22 20 18 24 24 H 1.48500 * 109.46880 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46944 * 299.99378 * 22 20 18 26 26 C 1.46849 * 111.00084 * 170.00012 * 12 11 10 27 27 C 1.38170 * 119.94441 * 359.51518 * 10 5 4 28 28 H 1.09003 * 109.46551 * 269.98098 * 1 2 3 29 29 H 1.08994 * 109.46928 * 29.97908 * 1 2 3 30 30 H 1.08998 * 109.46924 * 149.98089 * 1 2 3 31 31 H 1.08002 * 119.97037 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.02936 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47309 * 35.22547 * 7 6 5 34 34 H 1.08999 * 109.47071 * 60.00030 * 8 7 6 35 35 H 1.08998 * 109.46444 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.46717 * 299.99937 * 8 7 6 37 37 H 1.09000 * 109.46714 * 60.00917 * 9 7 6 38 38 H 1.08993 * 109.47431 * 180.02562 * 9 7 6 39 39 H 1.08999 * 109.47614 * 300.00647 * 9 7 6 40 40 H 1.09000 * 109.47446 * 199.72352 * 11 10 5 41 41 H 1.08999 * 109.47630 * 319.72906 * 11 10 5 42 42 H 1.09001 * 109.46090 * 294.17733 * 13 12 11 43 43 H 1.08996 * 109.46553 * 54.14072 * 13 12 11 44 44 H 1.08996 * 109.50374 * 299.23675 * 14 13 12 45 45 H 1.09000 * 109.53752 * 179.13866 * 14 13 12 46 46 H 1.09002 * 109.51716 * 182.44189 * 15 14 13 47 47 H 1.08994 * 109.57896 * 62.28052 * 15 14 13 48 48 H 0.96997 * 120.00033 * 179.97438 * 21 20 18 49 49 H 1.08991 * 109.46072 * 305.85297 * 26 12 11 50 50 H 1.09001 * 109.46237 * 65.82527 * 26 12 11 51 51 H 1.07995 * 119.97638 * 180.24928 * 27 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.2735 0.0000 0.0039 6 8 5.6325 0.0001 0.0091 7 6 6.2807 1.2680 0.1276 8 6 7.6770 1.0733 0.7222 9 6 6.4007 1.9108 -1.2556 10 6 3.5788 -1.2006 -0.0014 11 6 4.3304 -2.5067 -0.0014 12 7 4.7835 -2.8109 1.3624 13 6 5.7770 -1.8301 1.8179 14 6 6.1169 -2.0909 3.2871 15 6 6.6701 -3.5112 3.4335 16 6 5.6357 -4.5101 2.9074 17 1 4.7280 -4.4439 3.5073 18 6 6.1958 -5.9065 2.9933 19 1 6.3082 -6.4992 2.0976 20 6 6.5646 -6.4274 4.2155 21 7 6.4281 -5.7055 5.3063 22 14 7.2595 -8.1581 4.3218 23 1 8.4974 -8.2455 3.5062 24 1 7.5748 -8.4788 5.7371 25 1 6.2580 -9.1261 3.8068 26 6 5.3097 -4.1792 1.4493 27 6 2.1971 -1.1979 -0.0009 28 1 -0.3632 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6559 2.1328 0.0004 32 1 4.1172 2.1371 -0.0001 33 1 5.6952 1.9159 0.7799 34 1 8.2626 0.4254 0.0699 35 1 8.1712 2.0406 0.8130 36 1 7.5916 0.6153 1.7076 37 1 5.4060 2.0496 -1.6792 38 1 6.8955 2.8777 -1.1653 39 1 6.9862 1.2629 -1.9079 40 1 3.6745 -3.3033 -0.3525 41 1 5.1937 -2.4291 -0.6623 42 1 6.6802 -1.9209 1.2145 43 1 5.3696 -0.8247 1.7124 44 1 5.2169 -1.9866 3.8929 45 1 6.8656 -1.3726 3.6211 46 1 6.8730 -3.7165 4.4846 47 1 7.5919 -3.6051 2.8594 48 1 6.6872 -6.0721 6.1661 49 1 4.5628 -4.8798 1.0760 50 1 6.2151 -4.2590 0.8476 51 1 1.6558 -2.1324 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232397586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:27 Heat of formation + Delta-G solvation = -39.633669 kcal Electronic energy + Delta-G solvation = -28019.909096 eV Core-core repulsion = 24497.103826 eV Total energy + Delta-G solvation = -3522.805270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62851 -39.55310 -38.85401 -35.88338 -34.43416 -33.68945 -32.41423 -31.94502 -31.48024 -28.24202 -27.43862 -26.93815 -26.77412 -24.24672 -23.62828 -23.01734 -21.62070 -21.22703 -20.34559 -19.03272 -18.40147 -17.29696 -17.05673 -16.61961 -16.14693 -15.87445 -15.46245 -15.35870 -15.26063 -14.91636 -14.73965 -14.50758 -14.32543 -14.10166 -14.01504 -13.66579 -13.53487 -13.40399 -13.23005 -13.05445 -12.90631 -12.81991 -12.66367 -12.50689 -12.43948 -12.40962 -12.21131 -11.98159 -11.84633 -11.73033 -11.47275 -11.35631 -11.33306 -10.80023 -10.66457 -10.35453 -9.77612 -9.12509 -8.81723 -8.06921 -6.21673 0.42551 0.53515 1.41370 1.43222 1.50822 2.32477 2.43259 2.75601 3.19436 3.34346 3.78944 3.86814 3.90677 3.99105 4.06716 4.20751 4.25082 4.29331 4.32257 4.40200 4.44667 4.54118 4.57533 4.65571 4.70168 4.72587 4.79936 4.82016 4.84600 4.88695 4.92436 4.95119 4.97356 5.00313 5.13207 5.16005 5.20940 5.23832 5.26264 5.28851 5.39016 5.45195 5.51358 5.56309 5.63446 5.76062 5.97220 5.98866 6.12667 6.21907 6.36785 6.47461 6.59636 6.90323 7.45901 8.97633 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003675 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.587697 B = 7616.696284 C = 8819.097273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.085 4.085 4 C -0.208 4.208 5 C 0.119 3.881 6 O -0.320 6.320 7 C 0.068 3.932 8 C -0.149 4.149 9 C -0.172 4.172 10 C -0.120 4.120 11 C 0.106 3.894 12 N -0.540 5.540 13 C 0.079 3.921 14 C -0.111 4.111 15 C -0.099 4.099 16 C 0.055 3.945 17 H -0.004 1.004 18 C -0.538 4.538 19 H 0.051 0.949 20 C 0.015 3.985 21 N -0.916 5.916 22 Si 0.956 3.044 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.081 3.919 27 C -0.079 4.079 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.017 0.983 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.020 0.980 48 H 0.260 0.740 49 H 0.057 0.943 50 H 0.010 0.990 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 19.385 -12.986 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.103 4.103 4 C -0.226 4.226 5 C 0.073 3.927 6 O -0.235 6.235 7 C 0.012 3.988 8 C -0.206 4.206 9 C -0.229 4.229 10 C -0.121 4.121 11 C -0.021 4.021 12 N -0.265 5.265 13 C -0.048 4.048 14 C -0.149 4.149 15 C -0.138 4.138 16 C 0.036 3.964 17 H 0.014 0.986 18 C -0.577 4.577 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.781 3.219 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.196 1.196 26 C -0.046 4.046 27 C -0.097 4.097 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.028 0.972 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.083 19.241 -12.508 23.742 hybrid contribution 1.265 -1.234 -0.095 1.770 sum -4.818 18.008 -12.603 22.502 Atomic orbital electron populations 1.20734 0.89321 1.03494 1.02626 1.20108 0.97538 0.92555 1.02985 1.21126 0.93168 0.98428 0.97593 1.21444 0.95745 0.96881 1.08542 1.18892 0.82805 0.93938 0.97050 1.86307 1.16222 1.33472 1.87508 1.22656 0.94391 0.83492 0.98241 1.21902 0.94033 1.03802 1.00848 1.22328 1.02927 1.01861 0.95778 1.19204 0.93892 0.92536 1.06494 1.20785 0.97504 0.94597 0.89197 1.62051 1.39452 1.02587 1.22391 1.22155 0.92487 0.96040 0.94111 1.21630 0.99616 0.97178 0.96505 1.21426 0.97213 0.93624 1.01510 1.18558 0.93765 0.93319 0.90720 0.98607 1.21485 1.42620 1.00261 0.93291 0.93069 1.25729 0.95946 1.01334 0.95389 1.70037 1.48759 1.38110 0.98574 0.85658 0.78956 0.80278 0.77024 1.19712 1.20799 1.19578 1.21995 0.96040 0.88387 0.98179 1.20929 0.92010 0.98859 0.97935 0.91191 0.90128 0.91317 0.83328 0.83492 0.90086 0.92444 0.88092 0.92844 0.92052 0.88902 0.92444 0.90151 0.95128 0.96502 0.89227 0.93732 0.91722 0.92367 0.96165 0.93043 0.92407 0.97151 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.13 -2.86 5.88 -19.85 -0.12 -2.97 16 3 C -0.09 -1.67 9.69 22.25 0.22 -1.46 16 4 C -0.21 -4.49 8.24 22.37 0.18 -4.31 16 5 C 0.12 3.23 5.32 22.51 0.12 3.35 16 6 O -0.32 -8.69 5.91 -92.48 -0.55 -9.24 16 7 C 0.07 1.31 2.85 30.60 0.09 1.40 16 8 C -0.15 -2.78 9.56 71.98 0.69 -2.09 16 9 C -0.17 -2.61 9.17 71.98 0.66 -1.95 16 10 C -0.12 -3.61 5.18 -19.77 -0.10 -3.71 16 11 C 0.11 3.62 4.99 85.55 0.43 4.05 16 12 N -0.54 -21.89 4.65 -900.94 -4.19 -26.08 16 13 C 0.08 3.07 4.04 86.33 0.35 3.42 16 14 C -0.11 -4.75 6.09 30.65 0.19 -4.56 16 15 C -0.10 -5.10 5.03 30.68 0.15 -4.94 16 16 C 0.06 2.99 2.26 -11.49 -0.03 2.96 16 17 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 18 C -0.54 -31.11 8.56 25.60 0.22 -30.89 16 19 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 20 C 0.01 0.85 5.31 84.66 0.45 1.30 16 21 N -0.92 -54.76 11.36 21.45 0.24 -54.52 16 22 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.08 3.76 4.68 86.33 0.40 4.16 16 27 C -0.08 -2.08 9.32 22.26 0.21 -1.88 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.15 2.44 5.43 -2.91 -0.02 2.42 16 33 H 0.08 1.40 6.32 -2.39 -0.02 1.38 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 0.94 6.90 -2.39 -0.02 0.93 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 2.57 7.85 -2.39 -0.02 2.56 16 41 H 0.03 1.07 7.84 -2.39 -0.02 1.06 16 42 H 0.02 0.67 7.97 -2.39 -0.02 0.65 16 43 H 0.09 3.20 4.42 -2.39 -0.01 3.19 16 44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.06 3.32 6.16 -2.39 -0.01 3.31 16 47 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.06 2.60 8.01 -2.39 -0.02 2.58 16 50 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.13 3.22 8.04 -2.91 -0.02 3.20 16 Total: -1.00 -66.66 387.74 3.24 -63.43 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.88 Total: 18.58 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 4.82 Total: -39.05 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.94 Total: -80.59 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.55 Total: -9.24 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.66 3.24 -63.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232397586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.794 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds