Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.52998 * 109.47088 * 239.99992 * 2 1 3 5 5 C 1.50696 * 109.46832 * 119.99801 * 2 1 3 6 6 C 1.38288 * 119.94574 * 359.97438 * 5 2 1 7 7 C 1.38126 * 120.05386 * 179.74205 * 6 5 2 8 8 C 1.38746 * 119.94576 * 0.26200 * 7 6 5 9 9 O 1.35908 * 120.05602 * 179.97438 * 8 7 6 10 10 C 1.38706 * 119.89054 * 359.97438 * 8 7 6 11 11 C 1.50702 * 120.03181 * 180.02562 * 10 8 7 12 12 N 1.46899 * 109.47242 * 285.00494 * 11 10 8 13 13 C 1.46840 * 111.00032 * 45.78995 * 12 11 10 14 14 C 1.53036 * 109.52358 * 185.84060 * 13 12 11 15 15 C 1.53114 * 109.27562 * 300.81878 * 14 13 12 16 16 C 1.50704 * 109.57417 * 177.59281 * 15 14 13 17 17 H 1.08002 * 119.99728 * 240.28492 * 16 15 14 18 18 C 1.37876 * 120.00445 * 60.28455 * 16 15 14 19 19 N 1.31519 * 119.99734 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00260 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47152 * 59.99842 * 20 18 16 22 22 H 1.48497 * 109.47119 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47253 * 299.99982 * 20 18 16 24 24 C 1.53114 * 109.16625 * 57.65367 * 15 14 13 25 25 C 1.46849 * 110.99963 * 169.99747 * 12 11 10 26 26 C 1.38166 * 119.94172 * 0.02562 * 10 8 7 27 27 H 1.08995 * 109.47227 * 300.00147 * 1 2 3 28 28 H 1.09001 * 109.46675 * 59.99843 * 1 2 3 29 29 H 1.09001 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47322 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47181 * 300.00294 * 3 2 1 32 32 H 1.09003 * 109.47559 * 59.99870 * 3 2 1 33 33 H 1.09001 * 109.47207 * 299.99667 * 4 2 1 34 34 H 1.08993 * 109.47091 * 60.00257 * 4 2 1 35 35 H 1.08997 * 109.46797 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.97454 * 0.02855 * 6 5 2 37 37 H 1.07999 * 120.02656 * 180.27809 * 7 6 5 38 38 H 0.96694 * 114.00358 * 89.99573 * 9 8 7 39 39 H 1.09003 * 109.46652 * 45.00656 * 11 10 8 40 40 H 1.09002 * 109.47094 * 164.99721 * 11 10 8 41 41 H 1.09005 * 109.46052 * 305.85213 * 13 12 11 42 42 H 1.08998 * 109.46752 * 65.81812 * 13 12 11 43 43 H 1.09002 * 109.50672 * 180.87353 * 14 13 12 44 44 H 1.09000 * 109.53601 * 60.77813 * 14 13 12 45 45 H 1.09001 * 109.52630 * 297.74328 * 15 14 13 46 46 H 0.96999 * 120.00084 * 180.02562 * 19 18 16 47 47 H 1.08994 * 109.50822 * 182.40518 * 24 15 14 48 48 H 1.09007 * 109.53296 * 62.30301 * 24 15 14 49 49 H 1.09006 * 109.46334 * 294.18003 * 25 12 11 50 50 H 1.09005 * 109.46143 * 54.15160 * 25 12 11 51 51 H 1.08007 * 119.97101 * 179.97438 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1326 -1.2350 2.1403 7 6 1.5905 -1.8912 3.2662 8 6 2.9544 -2.0190 3.4867 9 8 3.4074 -2.6638 4.5940 10 6 3.8548 -1.4876 2.5751 11 6 5.3368 -1.6252 2.8112 12 7 5.7533 -0.6917 3.8662 13 6 4.8292 -0.7398 5.0064 14 6 5.2085 0.3439 6.0182 15 6 6.6459 0.1121 6.4921 16 6 7.0467 1.2094 7.4442 17 1 7.8852 1.8483 7.2094 18 6 6.3431 1.3977 8.6149 19 7 5.3217 0.6199 8.9005 20 14 6.8396 2.7582 9.7945 21 1 6.7460 4.0700 9.1048 22 1 5.9309 2.7511 10.9690 23 1 8.2362 2.5356 10.2473 24 6 7.5819 0.1186 5.2805 25 6 7.1338 -0.9584 4.2900 26 6 3.3917 -0.8322 1.4505 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1391 35 1 3.1300 -0.7216 -1.2489 36 1 0.0711 -1.1356 1.9680 37 1 0.8875 -2.3046 3.9741 38 1 3.5387 -3.6137 4.4699 39 1 5.5624 -2.6461 3.1195 40 1 5.8741 -1.3966 1.8908 41 1 3.8111 -0.5692 4.6561 42 1 4.8902 -1.7184 5.4823 43 1 4.5319 0.2979 6.8716 44 1 5.1342 1.3242 5.5475 45 1 6.7118 -0.8511 6.9982 46 1 4.8264 0.7526 9.7239 47 1 8.6011 -0.0884 5.6068 48 1 7.5458 1.0951 4.7973 49 1 7.1841 -1.9362 4.7693 50 1 7.7897 -0.9466 3.4195 51 1 4.0924 -0.4179 0.7406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233286506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -27.215181 kcal Electronic energy + Delta-G solvation = -27814.924894 eV Core-core repulsion = 24292.658130 eV Total energy + Delta-G solvation = -3522.266764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49154 -38.43675 -37.32221 -35.31691 -33.97543 -32.04553 -30.46758 -29.63071 -28.86899 -27.76571 -27.38291 -26.23111 -24.24153 -22.94723 -22.12298 -21.67299 -20.70669 -19.09181 -18.48127 -17.99025 -16.44139 -16.10581 -15.85087 -15.35847 -14.70620 -14.56323 -14.40093 -14.33065 -13.99661 -13.67931 -13.50357 -12.95676 -12.82269 -12.72940 -12.53799 -12.31755 -12.15842 -12.11255 -11.87223 -11.78281 -11.69781 -11.60981 -11.22220 -10.98548 -10.94053 -10.85618 -10.72810 -10.59746 -10.33991 -10.24629 -9.87217 -9.82753 -9.28685 -8.86804 -8.74941 -8.60885 -8.26189 -8.15204 -7.46991 -5.86656 -3.92170 1.30654 1.42805 3.38551 3.42738 3.45672 3.63807 4.32969 4.48065 4.52798 4.58807 4.75550 4.85099 4.94100 5.01947 5.12913 5.32115 5.37191 5.42853 5.46481 5.48541 5.58549 5.64170 5.70251 5.72213 5.73101 5.84348 5.86631 5.92296 6.01964 6.04691 6.05997 6.11747 6.17941 6.27143 6.41810 6.46538 6.61446 6.62709 6.67948 6.77536 6.87523 6.92739 7.06512 7.20604 7.32226 7.60559 7.75895 7.79716 7.86819 7.97858 8.18758 8.31760 8.59943 9.11317 9.71288 11.19054 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.003241 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.514177 B = 8637.658153 C = 8818.456004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.086 4.086 6 C -0.109 4.109 7 C -0.148 4.148 8 C 0.116 3.884 9 O -0.481 6.481 10 C -0.099 4.099 11 C 0.099 3.901 12 N -0.529 5.529 13 C 0.060 3.940 14 C -0.104 4.104 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.052 0.948 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.279 1.279 24 C -0.105 4.105 25 C 0.062 3.938 26 C -0.084 4.084 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.374 0.626 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.036 0.964 45 H 0.019 0.981 46 H 0.258 0.742 47 H 0.048 0.952 48 H 0.055 0.945 49 H 0.023 0.977 50 H 0.054 0.946 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -6.803 -19.444 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.195 4.195 5 C -0.086 4.086 6 C -0.127 4.127 7 C -0.167 4.167 8 C 0.071 3.929 9 O -0.291 6.291 10 C -0.099 4.099 11 C -0.029 4.029 12 N -0.255 5.255 13 C -0.067 4.067 14 C -0.142 4.142 15 C 0.031 3.969 16 C -0.549 4.549 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.143 4.143 25 C -0.066 4.066 26 C -0.103 4.103 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.230 0.770 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.041 0.959 50 H 0.072 0.928 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.148 -5.798 -19.225 22.066 hybrid contribution 0.246 -0.536 0.966 1.132 sum -8.903 -6.334 -18.259 21.278 Atomic orbital electron populations 1.21962 0.94373 1.01807 1.01929 1.19453 0.95481 0.95129 0.92609 1.21903 1.01487 0.94490 1.01824 1.21883 1.01272 1.00111 0.96202 1.19735 0.93185 0.99390 0.96249 1.20978 0.99631 0.98314 0.93805 1.21377 0.94849 1.02236 0.98203 1.18256 0.90862 0.97104 0.86670 1.85383 1.87038 1.24289 1.32368 1.20165 0.95755 0.99783 0.94238 1.20924 0.90377 0.94898 0.96703 1.62212 1.02848 1.48907 1.11505 1.22539 0.94315 0.99568 0.90251 1.21670 1.00820 0.95143 0.96574 1.18665 0.90844 0.96727 0.90674 1.21190 1.14224 1.15797 1.03698 0.92943 1.24969 0.95112 0.96108 0.97834 1.69892 1.19736 1.38551 1.24744 0.86723 0.78265 0.82801 0.80555 1.20369 1.21415 1.20435 1.21666 0.98967 0.97050 0.96644 1.22109 0.88815 0.97991 0.97676 1.20699 0.94778 0.98006 0.96817 0.92190 0.92502 0.92384 0.92192 0.92552 0.92300 0.92634 0.92507 0.92368 0.85643 0.85693 0.77012 0.94840 0.90935 0.92033 0.93893 0.89252 0.94543 0.96283 0.93164 0.93333 0.92632 0.95912 0.92762 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.13 37.16 0.27 -0.88 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.33 8.28 37.16 0.31 -1.02 16 4 C -0.14 -1.10 8.29 37.16 0.31 -0.80 16 5 C -0.09 -0.99 4.76 -104.60 -0.50 -1.49 16 6 C -0.11 -1.27 8.97 -39.60 -0.36 -1.63 16 7 C -0.15 -1.92 9.99 -39.43 -0.39 -2.31 16 8 C 0.12 1.67 4.75 -39.22 -0.19 1.49 16 9 O -0.48 -7.08 9.15 -19.45 -0.18 -7.26 16 10 C -0.10 -1.43 4.76 -104.47 -0.50 -1.92 16 11 C 0.10 1.50 5.28 -4.98 -0.03 1.47 16 12 N -0.53 -10.03 4.80 -236.11 -1.13 -11.16 16 13 C 0.06 1.27 3.70 -3.84 -0.01 1.26 16 14 C -0.10 -2.64 5.12 -26.65 -0.14 -2.78 16 15 C 0.05 1.29 2.16 -91.65 -0.20 1.09 16 16 C -0.51 -14.61 8.56 -34.44 -0.29 -14.90 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 19 N -0.89 -26.34 11.37 55.43 0.63 -25.71 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.11 -2.33 5.32 -26.65 -0.14 -2.47 16 25 C 0.06 1.17 5.42 -3.83 -0.02 1.15 16 26 C -0.08 -1.08 8.33 -39.61 -0.33 -1.41 16 27 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 30 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.47 7.40 -51.93 -0.38 0.09 16 36 H 0.13 1.20 5.89 -52.49 -0.31 0.89 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.37 3.74 9.06 45.56 0.41 4.15 16 39 H 0.03 0.49 7.94 -51.93 -0.41 0.08 16 40 H 0.07 0.99 7.95 -51.93 -0.41 0.57 16 41 H 0.06 1.32 4.87 -51.93 -0.25 1.07 16 42 H 0.04 0.95 6.32 -51.93 -0.33 0.62 16 43 H 0.09 2.54 6.17 -51.93 -0.32 2.22 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 51 H 0.12 1.43 7.04 -52.48 -0.37 1.06 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -31.30 381.86 -10.54 -41.84 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.15 Total: 3.46 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.44 Total: -23.89 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.50 Total: -36.87 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.18 Total: -7.26 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.30 -10.54 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233286506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.626 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds