Wall clock time and date at job start Tue Mar 31 2020 12:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47595 * 2 1 4 4 C 1.53002 * 109.47118 * 239.99619 * 2 1 3 5 5 C 1.50707 * 109.47183 * 119.99900 * 2 1 3 6 6 C 1.38290 * 119.94069 * 359.97438 * 5 2 1 7 7 C 1.38119 * 120.05321 * 180.02562 * 6 5 2 8 8 C 1.38752 * 119.94359 * 359.97438 * 7 6 5 9 9 O 1.35902 * 120.05472 * 179.97438 * 8 7 6 10 10 C 1.38713 * 119.89198 * 359.97438 * 8 7 6 11 11 C 1.50694 * 120.02981 * 179.97438 * 10 8 7 12 12 N 1.46898 * 109.47670 * 75.86477 * 11 10 8 13 13 C 1.46844 * 111.00069 * 75.48718 * 12 11 10 14 14 C 1.53028 * 109.52618 * 185.84080 * 13 12 11 15 15 C 1.53112 * 109.28187 * 300.82356 * 14 13 12 16 16 C 1.53120 * 109.16131 * 57.65324 * 15 14 13 17 17 H 1.09007 * 109.50367 * 62.28364 * 16 15 14 18 18 C 1.50700 * 109.50628 * 182.40548 * 16 15 14 19 19 H 1.08002 * 119.99730 * 119.99838 * 18 16 15 20 20 C 1.37879 * 120.00051 * 299.99900 * 18 16 15 21 21 N 1.31511 * 119.99716 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00094 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47313 * 89.99909 * 22 20 18 24 24 H 1.48501 * 109.47088 * 210.00069 * 22 20 18 25 25 H 1.48505 * 109.47147 * 329.99982 * 22 20 18 26 26 C 1.46840 * 111.00502 * 199.70350 * 12 11 10 27 27 C 1.38160 * 119.93826 * 0.25453 * 10 8 7 28 28 H 1.09007 * 109.46952 * 300.00483 * 1 2 3 29 29 H 1.08997 * 109.47190 * 59.99831 * 1 2 3 30 30 H 1.08994 * 109.47663 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47289 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46903 * 300.00187 * 3 2 1 33 33 H 1.09000 * 109.47066 * 59.99930 * 3 2 1 34 34 H 1.09002 * 109.47057 * 300.00286 * 4 2 1 35 35 H 1.09007 * 109.46770 * 60.00186 * 4 2 1 36 36 H 1.08994 * 109.46877 * 180.02562 * 4 2 1 37 37 H 1.07999 * 119.97583 * 0.02562 * 6 5 2 38 38 H 1.08000 * 120.03274 * 179.97438 * 7 6 5 39 39 H 0.96707 * 113.99514 * 275.03853 * 9 8 7 40 40 H 1.09008 * 109.47080 * 315.86235 * 11 10 8 41 41 H 1.09000 * 109.47318 * 195.87089 * 11 10 8 42 42 H 1.09000 * 109.46028 * 65.82659 * 13 12 11 43 43 H 1.09003 * 109.46420 * 305.86743 * 13 12 11 44 44 H 1.09000 * 109.50456 * 60.76767 * 14 13 12 45 45 H 1.09007 * 109.50330 * 180.88210 * 14 13 12 46 46 H 1.09002 * 109.52579 * 177.55752 * 15 14 13 47 47 H 1.09002 * 109.52643 * 297.68311 * 15 14 13 48 48 H 0.97006 * 120.00069 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46539 * 54.14163 * 26 12 11 50 50 H 1.09002 * 109.46241 * 294.17467 * 26 12 11 51 51 H 1.08007 * 119.96858 * 179.74617 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1326 -1.2350 2.1403 7 6 1.5905 -1.8861 3.2691 8 6 2.9544 -2.0140 3.4895 9 8 3.4074 -2.6537 4.5997 10 6 3.8548 -1.4878 2.5749 11 6 5.3368 -1.6244 2.8116 12 7 5.7568 -2.9987 2.5068 13 6 5.8169 -3.2213 1.0566 14 6 6.1144 -4.6961 0.7773 15 6 7.4486 -5.0745 1.4263 16 6 7.3759 -4.7879 2.9287 17 1 6.6000 -5.4064 3.3800 18 6 8.7049 -5.1020 3.5658 19 1 9.2552 -4.3263 4.0775 20 6 9.2184 -6.3797 3.4955 21 7 8.5484 -7.3241 2.8719 22 14 10.8654 -6.7693 4.2858 23 1 10.6509 -7.1999 5.6907 24 1 11.5315 -7.8602 3.5299 25 1 11.7234 -5.5573 4.2652 26 6 7.0417 -3.3102 3.1456 27 6 3.3917 -0.8333 1.4498 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2489 37 1 0.0711 -1.1356 1.9681 38 1 0.8875 -2.2953 3.9796 39 1 3.4658 -2.0891 5.3826 40 1 5.5605 -1.3989 3.8543 41 1 5.8734 -0.9289 2.1663 42 1 6.6058 -2.6040 0.6268 43 1 4.8606 -2.9523 0.6079 44 1 5.3188 -5.3132 1.1947 45 1 6.1745 -4.8578 -0.2990 46 1 7.6435 -6.1350 1.2668 47 1 8.2504 -4.4857 0.9806 48 1 8.9098 -8.2230 2.8221 49 1 6.9751 -3.1060 4.2142 50 1 7.8250 -2.6926 2.7061 51 1 4.0924 -0.4199 0.7394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233286572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:46 Heat of formation + Delta-G solvation = -55.673259 kcal Electronic energy + Delta-G solvation = -27551.442933 eV Core-core repulsion = 24027.942134 eV Total energy + Delta-G solvation = -3523.500799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23758 -39.65389 -38.65638 -36.30152 -35.52852 -33.86546 -32.07055 -31.53468 -29.88949 -28.47835 -28.05598 -26.91701 -26.68388 -23.90139 -23.66759 -23.12361 -22.17054 -20.35213 -19.88673 -19.03722 -18.39365 -16.99254 -16.95456 -16.63781 -16.37903 -15.92574 -15.55331 -15.31938 -15.04632 -14.96600 -14.78428 -14.48222 -14.38883 -14.17266 -13.72802 -13.62620 -13.36493 -13.33671 -12.94580 -12.87543 -12.79910 -12.72977 -12.61908 -12.52905 -12.47081 -12.35672 -11.86487 -11.73793 -11.73386 -11.67061 -11.51753 -11.40465 -11.10773 -10.84659 -10.66677 -10.38079 -9.73115 -9.22781 -9.05568 -8.07144 -6.21875 0.39577 0.44946 1.41142 1.41517 1.51965 2.42843 2.68791 3.19397 3.26169 3.47272 3.71739 3.80743 3.92193 4.14326 4.17491 4.19378 4.23420 4.33248 4.38218 4.43541 4.54419 4.58871 4.63813 4.66635 4.75276 4.82653 4.84245 4.88399 4.95087 4.96901 5.01687 5.06237 5.08546 5.08752 5.14824 5.16633 5.18726 5.27347 5.37283 5.40733 5.48366 5.50617 5.55530 5.63022 5.67937 5.75852 5.97187 6.02300 6.13621 6.22468 6.38786 6.47632 6.91102 7.02813 7.45897 8.97647 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.003004 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.709634 B = 9318.098444 C = 9813.843450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.084 4.084 6 C -0.107 4.107 7 C -0.157 4.157 8 C 0.109 3.891 9 O -0.504 6.504 10 C -0.107 4.107 11 C 0.103 3.897 12 N -0.536 5.536 13 C 0.072 3.928 14 C -0.109 4.109 15 C -0.102 4.102 16 C 0.056 3.944 17 H -0.010 1.010 18 C -0.535 4.535 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 0.956 3.044 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.267 1.267 26 C 0.086 3.914 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.398 0.602 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.025 0.975 48 H 0.260 0.740 49 H 0.055 0.945 50 H 0.016 0.984 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 18.599 -5.535 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.084 4.084 6 C -0.125 4.125 7 C -0.176 4.176 8 C 0.064 3.936 9 O -0.316 6.316 10 C -0.108 4.108 11 C -0.024 4.024 12 N -0.260 5.260 13 C -0.056 4.056 14 C -0.147 4.147 15 C -0.140 4.140 16 C 0.037 3.963 17 H 0.009 0.991 18 C -0.574 4.574 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.556 5.556 22 Si 0.782 3.218 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.192 1.192 26 C -0.041 4.041 27 C -0.117 4.117 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.255 0.745 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.034 0.966 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.260 17.618 -5.751 25.326 hybrid contribution 1.718 0.006 0.695 1.853 sum -15.543 17.624 -5.056 24.037 Atomic orbital electron populations 1.21954 0.93095 1.02183 1.02712 1.19514 0.96507 0.95090 0.91541 1.21874 1.00960 0.94122 1.02376 1.21905 1.00933 1.00083 0.96754 1.20002 0.92603 0.99051 0.96763 1.21268 1.00819 0.97317 0.93130 1.21621 0.94475 1.01302 1.00176 1.18514 0.91320 0.94296 0.89505 1.84943 1.87784 1.39039 1.19799 1.20124 0.95042 0.99033 0.96628 1.20822 0.91516 0.88849 1.01207 1.61827 1.30190 1.23580 1.10425 1.21959 0.99764 0.95994 0.87861 1.21562 0.97755 0.95891 0.99496 1.21444 0.94277 1.01194 0.97084 1.18544 0.94091 0.90762 0.92914 0.99150 1.21524 1.05495 0.95402 1.34983 0.92931 1.25759 1.00862 0.96210 0.95822 1.70054 1.39709 1.02285 1.43566 0.85586 0.79876 0.77907 0.78445 1.20182 1.20842 1.19156 1.21958 0.87586 0.97364 0.97233 1.20860 0.95789 0.99034 0.95972 0.91764 0.91237 0.92408 0.92929 0.91104 0.92550 0.93310 0.90939 0.93052 0.83395 0.84582 0.74467 0.90491 0.93742 0.95406 0.90617 0.93963 0.91312 0.92439 0.95648 0.93100 0.92638 0.96624 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.13 71.98 0.51 -1.17 16 2 C -0.03 -0.40 0.85 -52.93 -0.05 -0.44 16 3 C -0.14 -1.80 8.28 71.98 0.60 -1.20 16 4 C -0.14 -2.17 8.29 71.98 0.60 -1.57 16 5 C -0.08 -1.69 4.76 -19.85 -0.09 -1.78 16 6 C -0.11 -2.13 8.97 22.25 0.20 -1.93 16 7 C -0.16 -3.65 9.99 22.36 0.22 -3.43 16 8 C 0.11 3.03 6.68 22.51 0.15 3.18 16 9 O -0.50 -14.86 12.82 -92.45 -1.19 -16.05 16 10 C -0.11 -2.98 4.83 -19.77 -0.10 -3.08 16 11 C 0.10 3.19 4.76 85.56 0.41 3.60 16 12 N -0.54 -20.76 4.57 -900.98 -4.12 -24.89 16 13 C 0.07 2.63 5.29 86.32 0.46 3.09 16 14 C -0.11 -4.56 6.09 30.64 0.19 -4.38 16 15 C -0.10 -5.14 5.02 30.67 0.15 -4.99 16 16 C 0.06 2.99 2.26 -11.49 -0.03 2.97 16 17 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 18 C -0.54 -30.76 8.56 25.60 0.22 -30.55 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.01 0.69 5.30 84.66 0.45 1.14 16 21 N -0.92 -55.09 11.35 21.45 0.24 -54.85 16 22 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.09 3.85 4.65 86.33 0.40 4.25 16 27 C -0.10 -2.30 7.72 22.25 0.17 -2.12 16 28 H 0.06 0.69 7.51 -2.38 -0.02 0.67 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.71 7.51 -2.39 -0.02 0.69 16 31 H 0.05 0.75 7.37 -2.39 -0.02 0.73 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 0.86 7.39 -2.39 -0.02 0.84 16 37 H 0.15 2.19 5.89 -2.91 -0.02 2.18 16 38 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.40 7.65 9.06 -74.05 -0.67 6.98 16 40 H 0.08 2.32 7.64 -2.38 -0.02 2.30 16 41 H 0.04 1.26 7.82 -2.39 -0.02 1.24 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 2.50 6.99 -2.39 -0.02 2.48 16 44 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 46 H 0.06 3.27 6.15 -2.39 -0.01 3.25 16 47 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 49 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 50 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.13 2.71 7.04 -2.91 -0.02 2.69 16 Total: -1.00 -67.98 391.02 1.65 -66.33 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.22 Total: 21.02 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 4.46 Total: -38.42 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.88 Total: -79.73 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.19 Total: -16.05 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.98 1.65 -66.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233286572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds