Wall clock time and date at job start Tue Mar 31 2020 12:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47102 * 239.99809 * 2 1 3 5 5 C 1.50699 * 109.46828 * 120.00220 * 2 1 3 6 6 C 1.38289 * 119.97034 * 239.72338 * 5 2 1 7 7 C 1.38243 * 120.11362 * 180.27479 * 6 5 2 8 8 C 1.38163 * 120.05442 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.02719 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46817 * 260.01857 * 9 8 7 11 11 C 1.46846 * 111.00057 * 66.04386 * 10 9 8 12 12 C 1.53039 * 109.52561 * 185.83905 * 11 10 9 13 13 C 1.53118 * 109.27747 * 300.82473 * 12 11 10 14 14 C 1.53117 * 109.16224 * 57.64950 * 13 12 11 15 15 H 1.09001 * 109.50186 * 62.28788 * 14 13 12 16 16 C 1.50703 * 109.50524 * 182.40321 * 14 13 12 17 17 H 1.07998 * 120.00022 * 119.99983 * 16 14 13 18 18 C 1.37872 * 119.99873 * 300.00394 * 16 14 13 19 19 N 1.31513 * 120.00131 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99913 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47368 * 60.00170 * 20 18 16 22 22 H 1.48502 * 109.47414 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47150 * 299.99964 * 20 18 16 24 24 C 1.46842 * 111.00150 * 190.25572 * 10 9 8 25 25 C 1.38708 * 119.94499 * 359.97438 * 8 7 6 26 26 O 1.35898 * 120.05505 * 180.02562 * 25 8 7 27 27 C 1.38125 * 119.97750 * 59.99870 * 5 2 1 28 28 H 1.09003 * 109.47311 * 300.00115 * 1 2 3 29 29 H 1.08996 * 109.47155 * 60.00125 * 1 2 3 30 30 H 1.08997 * 109.47606 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46588 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46980 * 299.99982 * 3 2 1 33 33 H 1.09003 * 109.47099 * 59.99755 * 3 2 1 34 34 H 1.09007 * 109.47318 * 300.00089 * 4 2 1 35 35 H 1.08996 * 109.47063 * 60.00009 * 4 2 1 36 36 H 1.09003 * 109.47196 * 180.02562 * 4 2 1 37 37 H 1.08004 * 119.94552 * 0.27176 * 6 5 2 38 38 H 1.08001 * 119.97523 * 179.97438 * 7 6 5 39 39 H 1.08995 * 109.47070 * 20.01626 * 9 8 7 40 40 H 1.08999 * 109.47219 * 140.01999 * 9 8 7 41 41 H 1.09001 * 109.46344 * 305.85888 * 11 10 9 42 42 H 1.09002 * 109.46053 * 65.82137 * 11 10 9 43 43 H 1.09004 * 109.50052 * 60.76134 * 12 11 10 44 44 H 1.08997 * 109.50299 * 180.88067 * 12 11 10 45 45 H 1.09002 * 109.52052 * 177.55386 * 13 12 11 46 46 H 1.08995 * 109.52310 * 297.68256 * 13 12 11 47 47 H 0.97001 * 119.99869 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.45979 * 294.17606 * 24 10 9 49 49 H 1.09006 * 109.45879 * 54.14019 * 24 10 9 50 50 H 0.96705 * 114.00232 * 269.97496 * 26 25 8 51 51 H 1.08000 * 120.02333 * 359.70376 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 2.8320 -0.0395 2.1375 7 6 3.2990 -0.6901 3.2643 8 6 2.9681 -2.0129 3.4867 9 6 3.4781 -2.7217 4.7151 10 7 4.6407 -3.5456 4.3577 11 6 5.7725 -2.7069 3.9430 12 6 6.9119 -3.5970 3.4413 13 6 7.3410 -4.5484 4.5616 14 6 6.1327 -5.3761 5.0084 15 1 5.7791 -5.9829 4.1748 16 6 6.5324 -6.2736 6.1511 17 1 6.0373 -6.1840 7.1067 18 6 7.5302 -7.2089 5.9766 19 7 8.1328 -7.3183 4.8128 20 14 8.0261 -8.3209 7.3933 21 1 6.8540 -9.1233 7.8265 22 1 9.1133 -9.2308 6.9513 23 1 8.5056 -7.4923 8.5285 24 6 5.0160 -4.4344 5.4646 25 6 2.1661 -2.6881 2.5784 26 8 1.8388 -3.9892 2.7952 27 6 1.6982 -2.0329 1.4485 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.0921 0.9944 1.9652 38 1 3.9238 -0.1641 3.9710 39 1 3.7707 -1.9858 5.4639 40 1 2.6918 -3.3589 5.1196 41 1 5.4550 -2.0379 3.1431 42 1 6.1187 -2.1182 4.7925 43 1 6.5704 -4.1758 2.5831 44 1 7.7576 -2.9749 3.1482 45 1 8.1227 -5.2137 4.1950 46 1 7.7198 -3.9709 5.4048 47 1 8.8350 -7.9761 4.6902 48 1 5.3658 -3.8376 6.3070 49 1 4.1489 -5.0202 5.7699 50 1 2.4630 -4.6209 2.4123 51 1 1.0734 -2.5563 0.7400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235686080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:06 Heat of formation + Delta-G solvation = -40.676552 kcal Electronic energy + Delta-G solvation = -27364.800997 eV Core-core repulsion = 23841.950504 eV Total energy + Delta-G solvation = -3522.850493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29740 -38.30777 -37.46327 -35.58133 -33.76382 -31.98464 -30.48018 -29.95435 -29.44559 -27.45896 -27.40763 -25.67809 -24.91334 -22.57958 -22.33694 -21.64338 -20.79224 -19.57984 -18.57148 -17.37339 -16.41699 -16.26477 -15.89277 -15.22827 -14.77324 -14.67710 -14.43620 -14.29521 -14.02784 -13.83479 -13.54877 -13.37720 -13.03415 -12.74121 -12.57421 -12.38536 -12.18869 -12.08347 -11.91821 -11.84380 -11.75520 -11.55130 -11.30797 -11.12005 -11.04252 -10.92200 -10.78349 -10.65460 -10.63199 -10.15184 -10.09643 -9.82067 -9.45741 -9.05181 -8.71617 -8.67915 -8.34857 -8.28815 -7.65318 -5.96330 -4.02463 1.33659 1.39021 3.33008 3.37653 3.40205 3.62496 4.31212 4.42376 4.49853 4.61979 4.70256 4.78982 4.98349 5.03782 5.09846 5.22934 5.33030 5.33706 5.39616 5.51080 5.53357 5.63620 5.65274 5.67375 5.71441 5.78225 5.82532 5.87874 5.90504 5.98158 6.07156 6.08638 6.09775 6.16136 6.28372 6.41321 6.44152 6.53874 6.59187 6.67179 6.74319 6.76777 6.90381 6.98545 7.22901 7.41258 7.68390 7.76235 7.83214 7.92099 8.09399 8.18705 8.49554 9.01374 9.61769 11.09531 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.002743 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.513155 B =10203.966627 C =10351.804660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.135 4.135 7 C -0.099 4.099 8 C -0.097 4.097 9 C 0.094 3.906 10 N -0.531 5.531 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.068 3.932 25 C 0.134 3.866 26 O -0.496 6.496 27 C -0.145 4.145 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.029 0.971 47 H 0.260 0.740 48 H 0.018 0.982 49 H 0.060 0.940 50 H 0.398 0.602 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 16.088 -10.278 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.152 4.152 7 C -0.118 4.118 8 C -0.098 4.098 9 C -0.033 4.033 10 N -0.256 5.256 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.039 3.961 15 H 0.052 0.948 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.059 4.059 25 C 0.088 3.912 26 O -0.308 6.308 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.078 0.922 50 H 0.255 0.745 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.519 15.902 -10.454 22.779 hybrid contribution 1.014 -0.335 1.292 1.676 sum -11.505 15.567 -9.163 21.416 Atomic orbital electron populations 1.21888 0.93795 1.02137 1.01713 1.19480 0.95614 0.94971 0.92772 1.21957 1.01307 0.94975 1.01794 1.21893 1.01418 1.00258 0.96019 1.19574 0.97520 0.93421 0.95690 1.21072 0.99340 1.00144 0.94687 1.20959 0.99362 0.93889 0.97548 1.20202 0.97330 0.94347 0.97952 1.20925 0.94561 0.95476 0.92352 1.62011 1.04765 1.19684 1.39105 1.22062 0.91581 0.94766 0.98234 1.21662 0.95477 0.97918 1.00322 1.21657 1.01858 0.96519 0.94859 1.18637 0.89463 0.91636 0.96407 0.94837 1.21117 1.19118 1.17574 0.97558 0.92925 1.24924 0.96262 0.97076 0.95541 1.69880 1.25074 1.35167 1.22642 0.86696 0.78144 0.80633 0.82719 1.20291 1.21336 1.20416 1.22326 0.99631 0.94092 0.89825 1.18199 0.95009 0.85281 0.92676 1.84680 1.52754 1.13331 1.79990 1.21171 1.02689 0.95143 0.97369 0.92524 0.92472 0.92377 0.92168 0.92496 0.92289 0.92372 0.92475 0.92352 0.85798 0.86201 0.94916 0.89804 0.92261 0.96111 0.92277 0.93692 0.89150 0.95237 0.93027 0.96374 0.92163 0.74492 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.29 37.16 0.31 -0.79 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.06 7.13 37.16 0.27 -0.80 16 4 C -0.14 -1.14 8.29 37.16 0.31 -0.83 16 5 C -0.06 -0.68 4.76 -104.65 -0.50 -1.18 16 6 C -0.13 -1.51 8.97 -39.56 -0.35 -1.86 16 7 C -0.10 -1.25 8.56 -39.61 -0.34 -1.59 16 8 C -0.10 -1.39 4.60 -104.47 -0.48 -1.87 16 9 C 0.09 1.49 4.76 -4.97 -0.02 1.47 16 10 N -0.53 -9.64 4.65 -236.11 -1.10 -10.74 16 11 C 0.06 1.09 5.26 -3.83 -0.02 1.07 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.44 16 13 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 14 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 15 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 16 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.29 11.35 55.43 0.63 -24.66 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.07 1.44 4.68 -3.84 -0.02 1.42 16 25 C 0.13 1.88 6.68 -39.22 -0.26 1.62 16 26 O -0.50 -7.14 12.74 -19.42 -0.25 -7.38 16 27 C -0.15 -1.78 8.65 -39.43 -0.34 -2.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 31 H 0.06 0.45 7.50 -51.93 -0.39 0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 34 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.12 1.14 5.89 -52.48 -0.31 0.83 16 38 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 39 H 0.03 0.50 7.98 -51.93 -0.41 0.09 16 40 H 0.08 1.37 7.69 -51.93 -0.40 0.97 16 41 H 0.06 0.96 6.31 -51.93 -0.33 0.64 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 50 H 0.40 4.89 9.06 45.56 0.41 5.30 16 51 H 0.12 1.36 7.10 -52.49 -0.37 0.98 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -28.74 389.97 -10.65 -39.38 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.31 Total: 3.78 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.48 Total: -22.52 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.47 Total: -35.40 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.25 Total: -7.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.74 -10.65 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235686080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.292 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds