Wall clock time and date at job start Tue Mar 31 2020 12:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47102 * 239.99809 * 2 1 3 5 5 C 1.50699 * 109.46828 * 120.00220 * 2 1 3 6 6 C 1.38289 * 119.97034 * 239.72338 * 5 2 1 7 7 C 1.38243 * 120.11362 * 180.27479 * 6 5 2 8 8 C 1.38163 * 120.05442 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.02719 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46817 * 260.01857 * 9 8 7 11 11 C 1.46846 * 111.00057 * 66.04386 * 10 9 8 12 12 C 1.53039 * 109.52561 * 185.83905 * 11 10 9 13 13 C 1.53118 * 109.27747 * 300.82473 * 12 11 10 14 14 C 1.53117 * 109.16224 * 57.64950 * 13 12 11 15 15 H 1.09001 * 109.50186 * 62.28788 * 14 13 12 16 16 C 1.50703 * 109.50524 * 182.40321 * 14 13 12 17 17 H 1.07998 * 120.00022 * 119.99983 * 16 14 13 18 18 C 1.37872 * 119.99873 * 300.00394 * 16 14 13 19 19 N 1.31513 * 120.00131 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99913 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47368 * 60.00170 * 20 18 16 22 22 H 1.48502 * 109.47414 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47150 * 299.99964 * 20 18 16 24 24 C 1.46842 * 111.00150 * 190.25572 * 10 9 8 25 25 C 1.38708 * 119.94499 * 359.97438 * 8 7 6 26 26 O 1.35898 * 120.05505 * 180.02562 * 25 8 7 27 27 C 1.38125 * 119.97750 * 59.99870 * 5 2 1 28 28 H 1.09003 * 109.47311 * 300.00115 * 1 2 3 29 29 H 1.08996 * 109.47155 * 60.00125 * 1 2 3 30 30 H 1.08997 * 109.47606 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46588 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46980 * 299.99982 * 3 2 1 33 33 H 1.09003 * 109.47099 * 59.99755 * 3 2 1 34 34 H 1.09007 * 109.47318 * 300.00089 * 4 2 1 35 35 H 1.08996 * 109.47063 * 60.00009 * 4 2 1 36 36 H 1.09003 * 109.47196 * 180.02562 * 4 2 1 37 37 H 1.08004 * 119.94552 * 0.27176 * 6 5 2 38 38 H 1.08001 * 119.97523 * 179.97438 * 7 6 5 39 39 H 1.08995 * 109.47070 * 20.01626 * 9 8 7 40 40 H 1.08999 * 109.47219 * 140.01999 * 9 8 7 41 41 H 1.09001 * 109.46344 * 305.85888 * 11 10 9 42 42 H 1.09002 * 109.46053 * 65.82137 * 11 10 9 43 43 H 1.09004 * 109.50052 * 60.76134 * 12 11 10 44 44 H 1.08997 * 109.50299 * 180.88067 * 12 11 10 45 45 H 1.09002 * 109.52052 * 177.55386 * 13 12 11 46 46 H 1.08995 * 109.52310 * 297.68256 * 13 12 11 47 47 H 0.97001 * 119.99869 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.45979 * 294.17606 * 24 10 9 49 49 H 1.09006 * 109.45879 * 54.14019 * 24 10 9 50 50 H 0.96705 * 114.00232 * 269.97496 * 26 25 8 51 51 H 1.08000 * 120.02333 * 359.70376 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 2.8320 -0.0395 2.1375 7 6 3.2990 -0.6901 3.2643 8 6 2.9681 -2.0129 3.4867 9 6 3.4781 -2.7217 4.7151 10 7 4.6407 -3.5456 4.3577 11 6 5.7725 -2.7069 3.9430 12 6 6.9119 -3.5970 3.4413 13 6 7.3410 -4.5484 4.5616 14 6 6.1327 -5.3761 5.0084 15 1 5.7791 -5.9829 4.1748 16 6 6.5324 -6.2736 6.1511 17 1 6.0373 -6.1840 7.1067 18 6 7.5302 -7.2089 5.9766 19 7 8.1328 -7.3183 4.8128 20 14 8.0261 -8.3209 7.3933 21 1 6.8540 -9.1233 7.8265 22 1 9.1133 -9.2308 6.9513 23 1 8.5056 -7.4923 8.5285 24 6 5.0160 -4.4344 5.4646 25 6 2.1661 -2.6881 2.5784 26 8 1.8388 -3.9892 2.7952 27 6 1.6982 -2.0329 1.4485 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.0921 0.9944 1.9652 38 1 3.9238 -0.1641 3.9710 39 1 3.7707 -1.9858 5.4639 40 1 2.6918 -3.3589 5.1196 41 1 5.4550 -2.0379 3.1431 42 1 6.1187 -2.1182 4.7925 43 1 6.5704 -4.1758 2.5831 44 1 7.7576 -2.9749 3.1482 45 1 8.1227 -5.2137 4.1950 46 1 7.7198 -3.9709 5.4048 47 1 8.8350 -7.9761 4.6902 48 1 5.3658 -3.8376 6.3070 49 1 4.1489 -5.0202 5.7699 50 1 2.4630 -4.6209 2.4123 51 1 1.0734 -2.5563 0.7400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235686080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:05 Heat of formation + Delta-G solvation = -56.407462 kcal Electronic energy + Delta-G solvation = -27365.483141 eV Core-core repulsion = 23841.950504 eV Total energy + Delta-G solvation = -3523.532637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27614 -39.70703 -38.51480 -36.62560 -35.45466 -33.68136 -31.81910 -31.29264 -30.71538 -28.07206 -28.05860 -26.92307 -26.89941 -23.93568 -23.40635 -23.17231 -22.13209 -20.48345 -20.28241 -18.51418 -18.22014 -17.24228 -16.96501 -16.72804 -16.36066 -15.88835 -15.66033 -15.21761 -15.06803 -14.96829 -14.83597 -14.53685 -14.39564 -14.34801 -13.96262 -13.41888 -13.39474 -13.16869 -13.01983 -12.83697 -12.74652 -12.67731 -12.65021 -12.52849 -12.46716 -12.20877 -12.02678 -11.86436 -11.73305 -11.71941 -11.46907 -11.39987 -11.11055 -10.85292 -10.67011 -10.37201 -9.65590 -9.36879 -9.11580 -8.07594 -6.21550 0.35825 0.43493 1.41601 1.42594 1.50198 2.42680 2.64738 3.19251 3.22443 3.44261 3.69157 3.85767 3.92920 4.09285 4.15719 4.19967 4.25204 4.32628 4.40951 4.42681 4.53107 4.59840 4.64609 4.68367 4.77612 4.81628 4.83057 4.89416 4.94007 4.97682 4.99376 5.06154 5.07337 5.09074 5.10609 5.17962 5.19305 5.27833 5.37169 5.39275 5.46887 5.51226 5.55620 5.63535 5.66768 5.73136 5.96005 5.98839 6.12881 6.21284 6.32781 6.46561 6.89669 6.90812 7.46140 8.96704 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.002743 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.513155 B =10203.966627 C =10351.804660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.057 4.057 6 C -0.133 4.133 7 C -0.101 4.101 8 C -0.116 4.116 9 C 0.102 3.898 10 N -0.534 5.534 11 C 0.069 3.931 12 C -0.108 4.108 13 C -0.103 4.103 14 C 0.057 3.943 15 H -0.001 1.001 16 C -0.537 4.537 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.915 5.915 20 Si 0.952 3.048 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.083 3.917 25 C 0.115 3.885 26 O -0.509 6.509 27 C -0.150 4.150 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.260 0.740 48 H 0.014 0.986 49 H 0.055 0.945 50 H 0.402 0.598 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 18.287 -10.922 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.057 4.057 6 C -0.150 4.150 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.026 4.026 10 N -0.259 5.259 11 C -0.059 4.059 12 C -0.146 4.146 13 C -0.142 4.142 14 C 0.038 3.962 15 H 0.017 0.983 16 C -0.576 4.576 17 H 0.068 0.932 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.045 4.045 25 C 0.070 3.930 26 O -0.321 6.321 27 C -0.168 4.168 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.032 0.968 49 H 0.073 0.927 50 H 0.260 0.740 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.138 18.113 -11.101 24.979 hybrid contribution 1.156 -0.992 1.420 2.083 sum -11.982 17.121 -9.681 23.031 Atomic orbital electron populations 1.21882 0.93201 1.01979 1.02366 1.19554 0.96051 0.95596 0.91656 1.21960 1.01335 0.93993 1.02687 1.21892 1.00973 1.00164 0.96508 1.19922 0.96506 0.92937 0.96373 1.21368 0.98583 1.01170 0.93907 1.21137 0.99367 0.93206 0.98256 1.20112 0.98723 0.95223 0.97680 1.20840 0.93017 0.95112 0.93581 1.61923 1.05700 1.20448 1.37793 1.22004 0.90592 0.94305 0.98953 1.21566 0.97135 0.97579 0.98341 1.21463 1.00371 0.96512 0.95826 1.18540 0.91119 0.91959 0.94553 0.98310 1.21495 1.19385 1.18522 0.98191 0.93199 1.25690 0.96267 0.98463 0.97933 1.70021 1.25368 1.35665 1.24328 0.85705 0.77880 0.78822 0.79792 1.19722 1.20892 1.19757 1.21982 0.98047 0.93991 0.90461 1.18443 0.95856 0.85157 0.93579 1.84658 1.53207 1.13944 1.80327 1.21296 1.02736 0.95826 0.96944 0.92840 0.90871 0.92986 0.92135 0.91146 0.91963 0.92939 0.90878 0.93020 0.83425 0.84964 0.94107 0.90880 0.90018 0.95732 0.93191 0.91431 0.92334 0.96018 0.93059 0.96813 0.92661 0.74027 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.29 71.98 0.60 -1.24 16 2 C -0.03 -0.42 0.85 -52.93 -0.05 -0.46 16 3 C -0.14 -1.65 7.13 71.98 0.51 -1.13 16 4 C -0.14 -1.95 8.29 71.98 0.60 -1.35 16 5 C -0.06 -1.13 4.76 -19.88 -0.09 -1.22 16 6 C -0.13 -2.60 8.97 22.28 0.20 -2.40 16 7 C -0.10 -2.32 8.56 22.25 0.19 -2.13 16 8 C -0.12 -3.21 4.60 -19.77 -0.09 -3.30 16 9 C 0.10 3.16 4.76 85.56 0.41 3.56 16 10 N -0.53 -19.30 4.65 -900.92 -4.19 -23.49 16 11 C 0.07 2.35 5.26 86.33 0.45 2.81 16 12 C -0.11 -4.20 6.09 30.65 0.19 -4.02 16 13 C -0.10 -5.00 5.02 30.67 0.15 -4.85 16 14 C 0.06 2.93 2.26 -11.49 -0.03 2.90 16 15 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 16 C -0.54 -30.14 8.56 25.60 0.22 -29.92 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.02 0.86 5.30 84.65 0.45 1.31 16 19 N -0.91 -53.40 11.35 21.45 0.24 -53.16 16 20 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 C 0.08 3.56 4.68 86.32 0.40 3.96 16 25 C 0.11 3.18 6.68 22.50 0.15 3.33 16 26 O -0.51 -14.88 12.74 -92.40 -1.18 -16.05 16 27 C -0.15 -3.49 8.65 22.36 0.19 -3.29 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.76 7.38 -2.39 -0.02 0.74 16 31 H 0.06 0.71 7.50 -2.39 -0.02 0.69 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.69 7.52 -2.39 -0.02 0.67 16 34 H 0.05 0.79 7.39 -2.38 -0.02 0.78 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.15 2.18 5.89 -2.91 -0.02 2.16 16 38 H 0.13 2.67 8.04 -2.91 -0.02 2.64 16 39 H 0.04 1.20 7.98 -2.39 -0.02 1.18 16 40 H 0.07 2.40 7.69 -2.39 -0.02 2.38 16 41 H 0.08 2.46 6.31 -2.39 -0.02 2.45 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 3.20 6.15 -2.39 -0.01 3.18 16 46 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.05 2.39 8.01 -2.38 -0.02 2.37 16 50 H 0.40 10.28 9.06 -74.05 -0.67 9.61 16 51 H 0.13 2.76 7.10 -2.91 -0.02 2.74 16 Total: -1.00 -62.61 389.97 1.59 -61.02 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.22 Total: 23.00 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.46 Total: -37.46 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -3.94 Total: -76.64 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.18 Total: -16.05 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.61 1.59 -61.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235686080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.613 kcal (2) G-P(sol) polarization free energy of solvation -62.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds