Wall clock time and date at job start Tue Mar 31 2020 12:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 C 1.53001 * 109.47233 * 239.99963 * 2 1 3 5 5 C 1.50702 * 109.46991 * 120.00054 * 2 1 3 6 6 C 1.38280 * 119.97563 * 0.02562 * 5 2 1 7 7 C 1.38243 * 120.11702 * 179.97438 * 6 5 2 8 8 C 1.38166 * 120.05414 * 0.02696 * 7 6 5 9 9 C 1.50692 * 120.02933 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47215 * 260.00016 * 9 8 7 11 11 C 1.46848 * 110.99870 * 189.99939 * 10 9 8 12 12 C 1.53042 * 109.51422 * 185.84413 * 11 10 9 13 13 C 1.53127 * 109.27584 * 300.80788 * 12 11 10 14 14 C 1.50697 * 109.57335 * 177.60412 * 13 12 11 15 15 H 1.08000 * 119.99890 * 245.72594 * 14 13 12 16 16 C 1.37884 * 120.00338 * 65.72098 * 14 13 12 17 17 N 1.31509 * 119.99616 * 9.55079 * 16 14 13 18 18 Si 1.86797 * 120.00066 * 189.55695 * 16 14 13 19 19 H 1.48497 * 109.47324 * 94.98917 * 18 16 14 20 20 H 1.48496 * 109.47066 * 214.98889 * 18 16 14 21 21 H 1.48505 * 109.47171 * 334.98853 * 18 16 14 22 22 C 1.53108 * 109.15410 * 57.66662 * 13 12 11 23 23 C 1.46849 * 111.00063 * 314.20797 * 10 9 8 24 24 C 1.38714 * 119.93941 * 0.22949 * 8 7 6 25 25 O 1.35902 * 120.05041 * 179.72614 * 24 8 7 26 26 C 1.38122 * 119.97163 * 179.97438 * 5 2 1 27 27 H 1.08998 * 109.47303 * 300.00154 * 1 2 3 28 28 H 1.09005 * 109.47274 * 59.99733 * 1 2 3 29 29 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47258 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47518 * 299.99805 * 3 2 1 32 32 H 1.09005 * 109.46692 * 60.00246 * 3 2 1 33 33 H 1.08998 * 109.47376 * 300.00343 * 4 2 1 34 34 H 1.09005 * 109.46743 * 59.99978 * 4 2 1 35 35 H 1.08999 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.08008 * 119.94393 * 0.02562 * 6 5 2 37 37 H 1.08002 * 119.97401 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47260 * 139.99833 * 9 8 7 39 39 H 1.09000 * 109.47177 * 20.00258 * 9 8 7 40 40 H 1.08990 * 109.46836 * 305.85393 * 11 10 9 41 41 H 1.09006 * 109.46369 * 65.83489 * 11 10 9 42 42 H 1.08999 * 109.50587 * 60.75379 * 12 11 10 43 43 H 1.08996 * 109.50517 * 180.87911 * 12 11 10 44 44 H 1.09002 * 109.52647 * 297.75894 * 13 12 11 45 45 H 0.97001 * 119.99992 * 179.97438 * 17 16 14 46 46 H 1.09004 * 109.50379 * 182.39679 * 22 13 12 47 47 H 1.09001 * 109.53855 * 62.30413 * 22 13 12 48 48 H 1.09000 * 109.46126 * 294.18081 * 23 10 9 49 49 H 1.09007 * 109.45950 * 54.15597 * 23 10 9 50 50 H 0.96701 * 113.99911 * 90.00165 * 25 24 8 51 51 H 1.08002 * 120.02946 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1332 -1.2362 2.1401 7 6 1.5908 -1.8890 3.2696 8 6 2.9483 -2.0170 3.4925 9 6 3.4464 -2.7282 4.7242 10 7 3.8347 -1.7383 5.7378 11 6 4.5423 -2.3781 6.8542 12 6 4.8016 -1.3458 7.9539 13 6 5.6410 -0.1993 7.3832 14 6 5.8507 0.8497 8.4446 15 1 5.4186 1.8323 8.3256 16 6 6.5942 0.5551 9.5678 17 7 7.2745 -0.5687 9.6299 18 14 6.6350 1.7520 11.0014 19 1 5.6154 1.3563 12.0058 20 1 7.9814 1.7289 11.6273 21 1 6.3407 3.1224 10.5106 22 6 4.9039 0.4183 6.1919 23 6 4.6414 -0.6649 5.1432 24 6 3.8522 -1.4858 2.5843 25 8 5.1880 -1.6056 2.8042 26 6 3.3903 -0.8368 1.4482 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0716 -1.1375 1.9674 37 1 0.8865 -2.2984 3.9787 38 1 4.3098 -3.3412 4.4656 39 1 2.6553 -3.3640 5.1216 40 1 3.9330 -3.1888 7.2536 41 1 5.4925 -2.7783 6.5004 42 1 3.8513 -0.9551 8.3177 43 1 5.3405 -1.8171 8.7757 44 1 6.6068 -0.5833 7.0548 45 1 7.7979 -0.7758 10.4198 46 1 5.5157 1.2074 5.7547 47 1 3.9552 0.8373 6.5275 48 1 5.5910 -1.0733 4.7974 49 1 4.1038 -0.2312 4.2999 50 1 5.5789 -2.4047 2.4250 51 1 4.0922 -0.4263 0.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235686236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:10 Heat of formation + Delta-G solvation = -34.019054 kcal Electronic energy + Delta-G solvation = -27549.742482 eV Core-core repulsion = 24027.180680 eV Total energy + Delta-G solvation = -3522.561802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52950 -38.45335 -37.33352 -35.69871 -33.84168 -31.71914 -30.44358 -30.05330 -29.24328 -27.48259 -27.41682 -26.40647 -24.38833 -22.83232 -22.05823 -21.65397 -20.78286 -19.67123 -18.48780 -17.52701 -16.50137 -16.26721 -15.92719 -15.31297 -14.94999 -14.55260 -14.44365 -14.36653 -14.03148 -13.80668 -13.60583 -13.27741 -12.81863 -12.76328 -12.46820 -12.35444 -12.23050 -12.01841 -11.94934 -11.84901 -11.68380 -11.47637 -11.24466 -11.20535 -11.08756 -10.92324 -10.83705 -10.68629 -10.33630 -10.30466 -9.98081 -9.94760 -9.33921 -8.83855 -8.73693 -8.62903 -8.40124 -8.21225 -7.54020 -5.92723 -3.92769 1.24331 1.34585 3.36300 3.43160 3.46981 3.57450 4.15606 4.42893 4.52372 4.57301 4.71263 4.77286 4.91572 4.95114 5.06605 5.18989 5.30193 5.37557 5.39256 5.45610 5.51432 5.60361 5.63352 5.67866 5.69097 5.77149 5.83131 5.92783 5.94568 6.03203 6.04818 6.08003 6.11084 6.28189 6.32274 6.41471 6.53601 6.60701 6.61305 6.65355 6.82397 6.87070 6.99469 7.19945 7.24740 7.46329 7.68827 7.72164 7.81458 7.92609 8.13476 8.15027 8.58070 9.11392 9.69695 11.16538 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.002899 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.823282 B = 9655.750858 C =10061.627734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.060 4.060 6 C -0.133 4.133 7 C -0.086 4.086 8 C -0.104 4.104 9 C 0.098 3.902 10 N -0.528 5.528 11 C 0.059 3.941 12 C -0.098 4.098 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.885 3.115 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.106 4.106 23 C 0.062 3.938 24 C 0.119 3.881 25 O -0.487 6.487 26 C -0.145 4.145 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.023 0.977 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.027 0.973 45 H 0.258 0.742 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.041 0.959 49 H 0.061 0.939 50 H 0.380 0.620 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 -4.688 -21.314 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.195 4.195 5 C -0.061 4.061 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.104 4.104 9 C -0.030 4.030 10 N -0.253 5.253 11 C -0.068 4.068 12 C -0.136 4.136 13 C 0.029 3.971 14 C -0.548 4.548 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.713 3.287 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.144 4.144 23 C -0.065 4.065 24 C 0.074 3.926 25 O -0.296 6.296 26 C -0.163 4.163 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.236 0.764 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.290 -4.042 -20.696 24.407 hybrid contribution 0.944 -0.214 0.393 1.045 sum -11.345 -4.256 -20.302 23.644 Atomic orbital electron populations 1.21960 0.94161 1.01949 1.01999 1.19487 0.95666 0.95111 0.92595 1.21901 1.01339 0.94524 1.01932 1.21885 1.01186 1.00201 0.96203 1.19600 0.92659 0.97966 0.95851 1.21131 0.99719 0.99665 0.94595 1.20933 0.94409 0.98336 0.96838 1.20215 0.93547 1.00015 0.96668 1.20932 0.99060 0.93706 0.89299 1.62191 1.44331 1.10701 1.08098 1.22234 0.94837 0.97273 0.92501 1.21583 0.99569 0.96261 0.96232 1.18678 0.93659 0.93141 0.91621 1.21218 1.31533 0.98223 1.03834 0.92822 1.24962 0.94978 0.95400 0.98541 1.69973 1.29985 1.24455 1.28596 0.86693 0.77141 0.81711 0.83148 1.20780 1.21445 1.19947 1.21687 0.99909 0.96276 0.96545 1.22290 0.95269 0.92546 0.96417 1.18240 0.83422 0.97933 0.93004 1.85130 1.18452 1.47044 1.79011 1.21143 0.95487 1.02331 0.97342 0.92096 0.92466 0.92268 0.92344 0.92431 0.92266 0.92541 0.92424 0.92456 0.85636 0.85656 0.94729 0.90738 0.92850 0.95828 0.93663 0.90816 0.95482 0.93222 0.93468 0.93130 0.94123 0.92088 0.76425 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 7.13 37.16 0.26 -0.78 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 3 C -0.14 -1.19 8.29 37.16 0.31 -0.89 16 4 C -0.14 -1.01 8.29 37.16 0.31 -0.71 16 5 C -0.06 -0.65 4.76 -104.65 -0.50 -1.14 16 6 C -0.13 -1.45 8.97 -39.56 -0.36 -1.81 16 7 C -0.09 -1.06 9.67 -39.61 -0.38 -1.44 16 8 C -0.10 -1.43 4.57 -104.48 -0.48 -1.90 16 9 C 0.10 1.46 5.25 -4.98 -0.03 1.44 16 10 N -0.53 -9.91 4.80 -236.11 -1.13 -11.04 16 11 C 0.06 1.19 5.42 -3.83 -0.02 1.17 16 12 C -0.10 -2.38 5.19 -26.64 -0.14 -2.52 16 13 C 0.05 1.24 2.03 -91.65 -0.19 1.06 16 14 C -0.51 -14.58 8.48 -34.44 -0.29 -14.87 16 15 H 0.05 1.53 7.77 -52.49 -0.41 1.12 16 16 C 0.06 1.78 5.23 -17.82 -0.09 1.68 16 17 N -0.89 -26.27 12.20 55.43 0.68 -25.59 16 18 Si 0.88 21.90 29.55 -169.99 -5.02 16.88 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.11 -2.44 5.32 -26.66 -0.14 -2.58 16 23 C 0.06 1.23 3.85 -3.84 -0.01 1.22 16 24 C 0.12 1.58 4.82 -39.22 -0.19 1.39 16 25 O -0.49 -6.44 9.74 -19.43 -0.19 -6.63 16 26 C -0.14 -1.70 8.65 -39.43 -0.34 -2.04 16 27 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 30 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 36 H 0.13 1.12 5.89 -52.48 -0.31 0.81 16 37 H 0.13 1.38 8.04 -52.49 -0.42 0.96 16 38 H 0.03 0.51 7.80 -51.93 -0.40 0.10 16 39 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 40 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.95 7.00 -51.93 -0.36 1.59 16 44 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.04 0.84 6.56 -51.93 -0.34 0.50 16 49 H 0.06 1.19 5.15 -51.92 -0.27 0.92 16 50 H 0.38 3.31 9.06 45.56 0.41 3.72 16 51 H 0.12 1.32 7.10 -52.49 -0.37 0.95 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -31.18 384.33 -10.50 -41.69 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.22 Total: 2.01 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.41 Total: -23.11 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.46 Total: -36.63 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.19 Total: -6.63 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.18 -10.50 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235686236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.669 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds