Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 C 1.53001 * 109.47233 * 239.99963 * 2 1 3 5 5 C 1.50702 * 109.46991 * 120.00054 * 2 1 3 6 6 C 1.38280 * 119.97563 * 0.02562 * 5 2 1 7 7 C 1.38243 * 120.11702 * 179.97438 * 6 5 2 8 8 C 1.38166 * 120.05414 * 0.02696 * 7 6 5 9 9 C 1.50692 * 120.02933 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47215 * 260.00016 * 9 8 7 11 11 C 1.46848 * 110.99870 * 189.99939 * 10 9 8 12 12 C 1.53042 * 109.51422 * 185.84413 * 11 10 9 13 13 C 1.53127 * 109.27584 * 300.80788 * 12 11 10 14 14 C 1.50697 * 109.57335 * 177.60412 * 13 12 11 15 15 H 1.08000 * 119.99890 * 245.72594 * 14 13 12 16 16 C 1.37884 * 120.00338 * 65.72098 * 14 13 12 17 17 N 1.31509 * 119.99616 * 9.55079 * 16 14 13 18 18 Si 1.86797 * 120.00066 * 189.55695 * 16 14 13 19 19 H 1.48497 * 109.47324 * 94.98917 * 18 16 14 20 20 H 1.48496 * 109.47066 * 214.98889 * 18 16 14 21 21 H 1.48505 * 109.47171 * 334.98853 * 18 16 14 22 22 C 1.53108 * 109.15410 * 57.66662 * 13 12 11 23 23 C 1.46849 * 111.00063 * 314.20797 * 10 9 8 24 24 C 1.38714 * 119.93941 * 0.22949 * 8 7 6 25 25 O 1.35902 * 120.05041 * 179.72614 * 24 8 7 26 26 C 1.38122 * 119.97163 * 179.97438 * 5 2 1 27 27 H 1.08998 * 109.47303 * 300.00154 * 1 2 3 28 28 H 1.09005 * 109.47274 * 59.99733 * 1 2 3 29 29 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47258 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47518 * 299.99805 * 3 2 1 32 32 H 1.09005 * 109.46692 * 60.00246 * 3 2 1 33 33 H 1.08998 * 109.47376 * 300.00343 * 4 2 1 34 34 H 1.09005 * 109.46743 * 59.99978 * 4 2 1 35 35 H 1.08999 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.08008 * 119.94393 * 0.02562 * 6 5 2 37 37 H 1.08002 * 119.97401 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47260 * 139.99833 * 9 8 7 39 39 H 1.09000 * 109.47177 * 20.00258 * 9 8 7 40 40 H 1.08990 * 109.46836 * 305.85393 * 11 10 9 41 41 H 1.09006 * 109.46369 * 65.83489 * 11 10 9 42 42 H 1.08999 * 109.50587 * 60.75379 * 12 11 10 43 43 H 1.08996 * 109.50517 * 180.87911 * 12 11 10 44 44 H 1.09002 * 109.52647 * 297.75894 * 13 12 11 45 45 H 0.97001 * 119.99992 * 179.97438 * 17 16 14 46 46 H 1.09004 * 109.50379 * 182.39679 * 22 13 12 47 47 H 1.09001 * 109.53855 * 62.30413 * 22 13 12 48 48 H 1.09000 * 109.46126 * 294.18081 * 23 10 9 49 49 H 1.09007 * 109.45950 * 54.15597 * 23 10 9 50 50 H 0.96701 * 113.99911 * 90.00165 * 25 24 8 51 51 H 1.08002 * 120.02946 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1332 -1.2362 2.1401 7 6 1.5908 -1.8890 3.2696 8 6 2.9483 -2.0170 3.4925 9 6 3.4464 -2.7282 4.7242 10 7 3.8347 -1.7383 5.7378 11 6 4.5423 -2.3781 6.8542 12 6 4.8016 -1.3458 7.9539 13 6 5.6410 -0.1993 7.3832 14 6 5.8507 0.8497 8.4446 15 1 5.4186 1.8323 8.3256 16 6 6.5942 0.5551 9.5678 17 7 7.2745 -0.5687 9.6299 18 14 6.6350 1.7520 11.0014 19 1 5.6154 1.3563 12.0058 20 1 7.9814 1.7289 11.6273 21 1 6.3407 3.1224 10.5106 22 6 4.9039 0.4183 6.1919 23 6 4.6414 -0.6649 5.1432 24 6 3.8522 -1.4858 2.5843 25 8 5.1880 -1.6056 2.8042 26 6 3.3903 -0.8368 1.4482 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0716 -1.1375 1.9674 37 1 0.8865 -2.2984 3.9787 38 1 4.3098 -3.3412 4.4656 39 1 2.6553 -3.3640 5.1216 40 1 3.9330 -3.1888 7.2536 41 1 5.4925 -2.7783 6.5004 42 1 3.8513 -0.9551 8.3177 43 1 5.3405 -1.8171 8.7757 44 1 6.6068 -0.5833 7.0548 45 1 7.7979 -0.7758 10.4198 46 1 5.5157 1.2074 5.7547 47 1 3.9552 0.8373 6.5275 48 1 5.5910 -1.0733 4.7974 49 1 4.1038 -0.2312 4.2999 50 1 5.5789 -2.4047 2.4250 51 1 4.0922 -0.4263 0.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235686236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = -52.166279 kcal Electronic energy + Delta-G solvation = -27550.529405 eV Core-core repulsion = 24027.180680 eV Total energy + Delta-G solvation = -3523.348725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50257 -39.70551 -38.51601 -36.66419 -35.57496 -33.51309 -31.72053 -31.36247 -30.62256 -28.13215 -28.08358 -27.96331 -25.98603 -24.16607 -23.35664 -23.10977 -22.13688 -20.48454 -20.34064 -18.55963 -18.30554 -17.43045 -16.90921 -16.77434 -16.39375 -15.90080 -15.73957 -15.24831 -15.08431 -14.90388 -14.70564 -14.62214 -14.32405 -14.25037 -13.98532 -13.44531 -13.23755 -13.08178 -13.06394 -12.90963 -12.81375 -12.75488 -12.59021 -12.49501 -12.36839 -12.26673 -12.08816 -11.98899 -11.82605 -11.75054 -11.47609 -11.36918 -11.09921 -10.71885 -10.66865 -10.42006 -9.66803 -9.45530 -8.98106 -8.12619 -6.20951 0.32132 0.44059 1.39296 1.40576 1.51116 2.43420 2.64444 3.16590 3.24420 3.33389 3.66836 3.82927 3.92810 4.07590 4.14532 4.24170 4.30007 4.36411 4.40648 4.43839 4.52521 4.53171 4.68799 4.72906 4.80083 4.81555 4.83690 4.87682 4.92879 4.98159 5.04954 5.06385 5.08125 5.10905 5.14451 5.17171 5.23394 5.25629 5.33014 5.37763 5.45627 5.49482 5.53406 5.61851 5.65373 5.73084 5.96026 5.98401 5.99204 6.29845 6.32584 6.40315 6.86808 6.90109 7.45157 8.96009 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.002899 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.823282 B = 9655.750858 C =10061.627734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.057 4.057 6 C -0.135 4.135 7 C -0.090 4.090 8 C -0.126 4.126 9 C 0.100 3.900 10 N -0.534 5.534 11 C 0.070 3.930 12 C -0.089 4.089 13 C 0.048 3.952 14 C -0.536 4.536 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.951 3.049 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.270 1.270 22 C -0.101 4.101 23 C 0.081 3.919 24 C 0.108 3.892 25 O -0.505 6.505 26 C -0.152 4.152 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.037 0.963 43 H 0.045 0.955 44 H -0.010 1.010 45 H 0.261 0.739 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.032 0.968 49 H 0.070 0.930 50 H 0.397 0.603 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 -4.649 -22.611 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.192 4.192 5 C -0.057 4.057 6 C -0.153 4.153 7 C -0.109 4.109 8 C -0.127 4.127 9 C -0.026 4.026 10 N -0.259 5.259 11 C -0.058 4.058 12 C -0.127 4.127 13 C 0.029 3.971 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.184 4.184 17 N -0.558 5.558 18 Si 0.777 3.223 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.139 4.139 23 C -0.047 4.047 24 C 0.064 3.936 25 O -0.318 6.318 26 C -0.170 4.170 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.008 0.992 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.089 0.911 50 H 0.255 0.745 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.152 -4.016 -22.012 26.475 hybrid contribution 1.525 -0.218 0.714 1.698 sum -12.627 -4.234 -21.299 25.120 Atomic orbital electron populations 1.21961 0.93004 1.02520 1.02516 1.19556 0.96605 0.94739 0.91989 1.21907 1.00914 0.94714 1.02182 1.21867 1.00973 1.00270 0.96137 1.19933 0.92258 0.97044 0.96485 1.21406 1.00913 0.98970 0.94010 1.21148 0.94007 0.98207 0.97514 1.20181 0.94369 1.01554 0.96558 1.20964 0.99666 0.93026 0.88971 1.62113 1.43187 1.11566 1.09016 1.22025 0.95284 0.96490 0.91988 1.21358 0.98151 0.96468 0.96770 1.18609 0.92621 0.93480 0.92377 1.21552 1.32046 0.98623 1.05146 0.93435 1.25733 0.94448 0.97220 1.00974 1.70089 1.30350 1.26040 1.29321 0.85652 0.77414 0.79562 0.79715 1.19952 1.20794 1.19403 1.21582 0.98882 0.97110 0.96312 1.22023 0.95262 0.92065 0.95332 1.18408 0.83300 0.98372 0.93562 1.85052 1.18795 1.48368 1.79560 1.21275 0.96280 1.02302 0.97159 0.92434 0.91181 0.91656 0.93056 0.90797 0.93408 0.92471 0.91026 0.92844 0.83510 0.84473 0.94348 0.88998 0.90261 0.96722 0.94407 0.93615 0.99153 0.93009 0.94091 0.93703 0.95022 0.91135 0.74461 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.13 71.98 0.51 -1.16 16 2 C -0.03 -0.42 0.85 -52.93 -0.05 -0.47 16 3 C -0.14 -2.14 8.29 71.98 0.60 -1.55 16 4 C -0.14 -1.67 8.29 71.98 0.60 -1.08 16 5 C -0.06 -1.11 4.76 -19.88 -0.09 -1.20 16 6 C -0.14 -2.64 8.97 22.28 0.20 -2.44 16 7 C -0.09 -2.03 9.67 22.25 0.22 -1.81 16 8 C -0.13 -3.28 4.57 -19.77 -0.09 -3.37 16 9 C 0.10 2.87 5.25 85.55 0.45 3.32 16 10 N -0.53 -19.65 4.80 -900.93 -4.32 -23.97 16 11 C 0.07 2.81 5.42 86.33 0.47 3.28 16 12 C -0.09 -4.42 5.19 30.65 0.16 -4.26 16 13 C 0.05 2.58 2.03 -11.46 -0.02 2.56 16 14 C -0.54 -31.47 8.48 25.60 0.22 -31.25 16 15 H 0.05 2.77 7.77 -2.91 -0.02 2.75 16 16 C 0.01 0.86 5.23 84.66 0.44 1.31 16 17 N -0.92 -55.39 12.20 21.45 0.26 -55.13 16 18 Si 0.95 45.37 29.55 68.60 2.03 47.40 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C -0.10 -4.75 5.32 30.64 0.16 -4.58 16 23 C 0.08 3.22 3.85 86.32 0.33 3.55 16 24 C 0.11 2.77 4.82 22.51 0.11 2.88 16 25 O -0.51 -13.20 9.74 -92.45 -0.90 -14.10 16 26 C -0.15 -3.39 8.65 22.36 0.19 -3.19 16 27 H 0.06 0.72 7.51 -2.39 -0.02 0.70 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 30 H 0.05 0.85 7.39 -2.39 -0.02 0.83 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.05 0.70 7.39 -2.39 -0.02 0.68 16 36 H 0.15 2.18 5.89 -2.91 -0.02 2.17 16 37 H 0.14 2.68 8.04 -2.91 -0.02 2.65 16 38 H 0.04 1.07 7.80 -2.39 -0.02 1.05 16 39 H 0.09 2.30 8.00 -2.39 -0.02 2.28 16 40 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 41 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 2.49 7.00 -2.39 -0.02 2.48 16 44 H -0.01 -0.59 8.09 -2.39 -0.02 -0.61 16 45 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 47 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.03 1.33 6.56 -2.39 -0.02 1.31 16 49 H 0.07 2.72 5.15 -2.38 -0.01 2.70 16 50 H 0.40 6.77 9.06 -74.06 -0.67 6.10 16 51 H 0.13 2.66 7.10 -2.91 -0.02 2.64 16 Total: -1.00 -67.78 384.33 1.69 -66.09 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.23 Total: 19.19 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 4.40 Total: -39.48 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -4.06 Total: -79.10 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.90 Total: -14.10 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.78 1.69 -66.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235686236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.926 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds