Wall clock time and date at job start Tue Mar 31 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50700 * 109.47542 * 120.00713 * 2 1 3 5 5 C 1.38296 * 119.96900 * 300.01844 * 4 2 1 6 6 C 1.38241 * 120.11026 * 179.72615 * 5 4 2 7 7 C 1.38162 * 120.05536 * 0.50544 * 6 5 4 8 8 C 1.50707 * 120.02774 * 179.76996 * 7 6 5 9 9 N 1.46896 * 109.46979 * 254.51460 * 8 7 6 10 10 C 1.46901 * 111.00351 * 72.50591 * 9 8 7 11 11 C 1.50694 * 109.47386 * 195.60121 * 10 9 8 12 12 H 1.08007 * 119.99965 * 5.03661 * 11 10 9 13 13 C 1.37875 * 120.00151 * 185.02601 * 11 10 9 14 14 N 1.31514 * 119.99894 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46867 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46952 * 120.00382 * 15 13 11 18 18 H 1.48504 * 109.47045 * 240.00344 * 15 13 11 19 19 C 1.46909 * 110.99888 * 196.46108 * 9 8 7 20 20 C 1.54967 * 110.91991 * 312.89741 * 19 9 8 21 21 C 1.54262 * 104.15728 * 156.29343 * 20 19 9 22 22 C 1.53872 * 106.64432 * 336.44911 * 21 20 19 23 23 C 1.54265 * 106.59509 * 359.97263 * 22 21 20 24 24 C 1.38719 * 119.94463 * 359.49843 * 7 6 5 25 25 O 1.35900 * 120.05548 * 180.26984 * 24 7 6 26 26 C 1.38119 * 119.97451 * 120.00299 * 4 2 1 27 27 H 1.09003 * 109.47069 * 299.99223 * 1 2 3 28 28 H 1.08997 * 109.47437 * 59.99717 * 1 2 3 29 29 H 1.09006 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47069 * 240.00776 * 2 1 3 31 31 H 1.09003 * 109.46529 * 60.00446 * 3 2 1 32 32 H 1.08997 * 109.47178 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47210 * 300.00422 * 3 2 1 34 34 H 1.07999 * 119.94149 * 359.97438 * 5 4 2 35 35 H 1.07994 * 119.96895 * 180.25999 * 6 5 4 36 36 H 1.08995 * 109.46633 * 134.51221 * 8 7 6 37 37 H 1.08998 * 109.46817 * 14.51760 * 8 7 6 38 38 H 1.09005 * 109.46819 * 315.60660 * 10 9 8 39 39 H 1.09001 * 109.46733 * 75.60407 * 10 9 8 40 40 H 0.96995 * 119.99890 * 179.97438 * 14 13 11 41 41 H 1.08999 * 110.67150 * 189.59250 * 19 9 8 42 42 H 1.09001 * 110.47462 * 37.64549 * 20 19 9 43 43 H 1.08991 * 110.53145 * 274.97611 * 20 19 9 44 44 H 1.08996 * 110.03116 * 217.13202 * 21 20 19 45 45 H 1.09009 * 110.03200 * 95.75605 * 21 20 19 46 46 H 1.08991 * 110.03529 * 119.25448 * 22 21 20 47 47 H 1.09004 * 110.02932 * 240.64365 * 22 21 20 48 48 H 1.08999 * 110.48965 * 142.29449 * 23 22 21 49 49 H 1.09010 * 110.48805 * 264.79850 * 23 22 21 50 50 H 0.96703 * 113.99539 * 89.99986 * 25 24 7 51 51 H 1.08002 * 120.02860 * 0.03706 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.6976 -0.2379 2.4862 6 6 2.1523 -0.8907 3.6168 7 6 2.9511 -2.0113 3.4946 8 6 3.4506 -2.7195 4.7275 9 7 4.8761 -2.4211 4.9199 10 6 5.0676 -1.0380 5.3761 11 6 6.5116 -0.6455 5.1978 12 1 7.1991 -1.3224 4.7123 13 6 6.9550 0.5776 5.6541 14 7 6.1179 1.4016 6.2455 15 14 8.7448 1.0643 5.4324 16 1 9.4735 -0.0300 4.7421 17 1 8.8236 2.3026 4.6165 18 1 9.3600 1.3076 6.7620 19 6 5.4920 -3.3736 5.8536 20 6 4.6154 -3.5537 7.1187 21 6 5.0196 -4.9390 7.6637 22 6 5.5924 -5.7304 6.4749 23 6 5.5159 -4.7988 5.2477 24 6 3.2883 -2.4874 2.2360 25 8 4.0695 -3.5927 2.1132 26 6 2.8265 -1.8334 1.1028 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.6766 1.9562 0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.0767 0.6404 2.5837 35 1 1.8860 -0.5221 4.5963 36 1 3.3173 -3.7946 4.6080 37 1 2.8874 -2.3779 5.5960 38 1 4.4348 -0.3712 4.7903 39 1 4.7980 -0.9623 6.4296 40 1 6.4299 2.2620 6.5669 41 1 6.4977 -3.0517 6.1238 42 1 3.5579 -3.5413 6.8547 43 1 4.8360 -2.7766 7.8504 44 1 4.1459 -5.4510 8.0669 45 1 5.7780 -4.8286 8.4388 46 1 6.6289 -6.0031 6.6725 47 1 4.9971 -6.6269 6.3016 48 1 6.3933 -4.9293 4.6143 49 1 4.6051 -4.9895 4.6799 50 1 3.5740 -4.4224 2.0772 51 1 3.0879 -2.2019 0.1218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237053592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:11 Heat of formation + Delta-G solvation = -36.813953 kcal Electronic energy + Delta-G solvation = -27808.553151 eV Core-core repulsion = 24285.870153 eV Total energy + Delta-G solvation = -3522.682998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.85448 -38.39690 -36.95788 -35.21834 -34.11398 -32.40448 -30.41595 -29.36385 -28.27358 -27.53521 -27.12330 -26.35774 -24.31928 -22.59751 -21.95040 -21.44666 -19.98238 -19.78878 -18.63447 -17.31281 -16.27778 -15.97092 -15.80715 -15.41344 -15.08996 -14.60803 -14.53423 -14.07004 -13.83837 -13.44373 -13.32876 -13.09327 -13.02865 -12.85797 -12.82976 -12.27860 -11.91640 -11.72999 -11.68682 -11.49982 -11.37845 -11.14635 -10.99283 -10.90089 -10.86918 -10.74582 -10.63979 -10.60086 -10.53651 -10.21118 -10.02981 -9.91789 -9.86342 -9.63317 -9.10168 -8.40806 -8.31537 -7.99527 -7.04371 -5.94371 -3.93792 1.66212 1.72267 3.35331 3.42729 3.48766 3.96859 4.49674 4.51999 4.85032 4.91118 4.93891 5.11603 5.14022 5.21959 5.26646 5.37433 5.41081 5.46204 5.53155 5.58707 5.62095 5.73458 5.80801 5.84196 5.89795 5.96166 5.97083 5.98777 6.02162 6.06990 6.12788 6.16534 6.22230 6.29968 6.30462 6.34706 6.37414 6.41276 6.49904 6.63982 6.74564 6.82367 6.88145 6.95927 7.03884 7.22397 7.40459 7.46932 7.92930 8.10101 8.23182 8.33683 8.66511 9.15151 9.69699 11.16255 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009307 B = 0.004982 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.790656 B = 5619.260027 C = 7660.647055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.071 4.071 5 C -0.125 4.125 6 C -0.091 4.091 7 C -0.088 4.088 8 C 0.098 3.902 9 N -0.512 5.512 10 C 0.192 3.808 11 C -0.497 4.497 12 H 0.062 0.938 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.095 3.905 20 C -0.160 4.160 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.114 4.114 24 C 0.131 3.869 25 O -0.480 6.480 26 C -0.151 4.151 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.029 0.971 39 H -0.005 1.005 40 H 0.258 0.742 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.375 0.625 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 -9.187 -7.295 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.110 4.110 7 C -0.090 4.090 8 C -0.030 4.030 9 N -0.234 5.234 10 C 0.067 3.933 11 C -0.536 4.536 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.015 4.015 20 C -0.200 4.200 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.152 4.152 24 C 0.086 3.914 25 O -0.287 6.287 26 C -0.169 4.169 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.013 0.987 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.228 0.772 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.498 -8.638 -7.667 15.608 hybrid contribution 0.299 0.282 0.822 0.919 sum -10.199 -8.356 -6.845 14.856 Atomic orbital electron populations 1.21847 0.94640 1.01734 1.01717 1.20076 0.95601 0.96109 0.95397 1.21864 1.01714 0.95027 1.01641 1.19559 0.97799 0.95322 0.94493 1.20832 1.01631 1.00008 0.91805 1.20957 0.97052 0.94349 0.98623 1.20211 0.96778 0.97089 0.94874 1.20856 0.91364 0.98211 0.92599 1.62162 1.09263 1.05319 1.46660 1.19756 0.97443 0.82466 0.93659 1.21210 0.94618 1.01265 1.36511 0.91962 1.24952 0.97544 0.96568 0.95528 1.69967 1.34445 1.09291 1.40386 0.86525 0.85351 0.78488 0.77599 1.19660 1.21152 1.21229 1.22614 0.98872 0.91213 0.88760 1.23076 1.00426 0.96467 0.99992 1.22026 0.99856 0.96148 0.97668 1.22124 1.00383 0.97996 0.95690 1.22393 1.01747 0.94669 0.96376 1.18149 0.91978 0.90063 0.91225 1.84978 1.33499 1.14604 1.95667 1.21195 0.99810 0.97795 0.98119 0.92403 0.92705 0.92720 0.90821 0.92316 0.92244 0.92740 0.86488 0.86114 0.91221 0.95091 0.95316 0.98731 0.93212 0.88700 0.91990 0.91726 0.92839 0.92313 0.92295 0.92684 0.91765 0.91848 0.77154 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.01 37.16 0.33 -1.03 16 2 C -0.05 -0.61 3.09 -91.77 -0.28 -0.90 16 3 C -0.15 -1.67 9.01 37.16 0.33 -1.34 16 4 C -0.07 -1.02 4.78 -104.64 -0.50 -1.52 16 5 C -0.12 -1.90 8.71 -39.56 -0.34 -2.24 16 6 C -0.09 -1.56 8.81 -39.61 -0.35 -1.91 16 7 C -0.09 -1.57 4.72 -104.47 -0.49 -2.07 16 8 C 0.10 1.76 3.30 -4.97 -0.02 1.74 16 9 N -0.51 -10.97 4.39 -227.08 -1.00 -11.97 16 10 C 0.19 5.01 4.50 -4.98 -0.02 4.98 16 11 C -0.50 -14.28 8.37 -34.44 -0.29 -14.56 16 12 H 0.06 1.82 7.77 -52.48 -0.41 1.41 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 15 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 C 0.09 1.83 2.80 -65.68 -0.18 1.64 16 20 C -0.16 -2.75 5.57 -25.03 -0.14 -2.89 16 21 C -0.12 -1.67 6.80 -25.62 -0.17 -1.85 16 22 C -0.12 -1.66 6.80 -25.61 -0.17 -1.83 16 23 C -0.11 -1.79 6.33 -25.08 -0.16 -1.95 16 24 C 0.13 2.19 6.68 -39.21 -0.26 1.93 16 25 O -0.48 -7.51 12.84 -19.43 -0.25 -7.76 16 26 C -0.15 -2.29 9.61 -39.44 -0.38 -2.67 16 27 H 0.06 0.56 7.39 -51.93 -0.38 0.17 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 31 H 0.06 0.69 7.39 -51.93 -0.38 0.31 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 1.56 7.10 -52.49 -0.37 1.19 16 35 H 0.12 2.02 8.00 -52.49 -0.42 1.60 16 36 H 0.07 1.11 5.82 -51.93 -0.30 0.81 16 37 H 0.03 0.57 6.65 -51.93 -0.35 0.22 16 38 H 0.03 0.81 6.53 -51.93 -0.34 0.47 16 39 H -0.01 -0.14 7.38 -51.93 -0.38 -0.53 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 2.09 7.25 -51.93 -0.38 1.72 16 42 H 0.06 1.03 5.79 -51.93 -0.30 0.72 16 43 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 0.95 6.10 -51.92 -0.32 0.63 16 50 H 0.37 3.86 9.06 45.56 0.41 4.27 16 51 H 0.12 1.60 7.94 -52.49 -0.42 1.19 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -31.85 393.25 -10.90 -42.75 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.09 Total: 5.15 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.20 Total: -24.97 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.26 Total: -38.35 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.25 Total: -7.76 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.85 -10.90 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237053592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.936 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds