Wall clock time and date at job start Tue Mar 31 2020 12:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50700 * 109.47542 * 120.00713 * 2 1 3 5 5 C 1.38296 * 119.96900 * 300.01844 * 4 2 1 6 6 C 1.38241 * 120.11026 * 179.72615 * 5 4 2 7 7 C 1.38162 * 120.05536 * 0.50544 * 6 5 4 8 8 C 1.50707 * 120.02774 * 179.76996 * 7 6 5 9 9 N 1.46896 * 109.46979 * 254.51460 * 8 7 6 10 10 C 1.46901 * 111.00351 * 72.50591 * 9 8 7 11 11 C 1.50694 * 109.47386 * 195.60121 * 10 9 8 12 12 H 1.08007 * 119.99965 * 5.03661 * 11 10 9 13 13 C 1.37875 * 120.00151 * 185.02601 * 11 10 9 14 14 N 1.31514 * 119.99894 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46867 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46952 * 120.00382 * 15 13 11 18 18 H 1.48504 * 109.47045 * 240.00344 * 15 13 11 19 19 C 1.46909 * 110.99888 * 196.46108 * 9 8 7 20 20 C 1.54967 * 110.91991 * 312.89741 * 19 9 8 21 21 C 1.54262 * 104.15728 * 156.29343 * 20 19 9 22 22 C 1.53872 * 106.64432 * 336.44911 * 21 20 19 23 23 C 1.54265 * 106.59509 * 359.97263 * 22 21 20 24 24 C 1.38719 * 119.94463 * 359.49843 * 7 6 5 25 25 O 1.35900 * 120.05548 * 180.26984 * 24 7 6 26 26 C 1.38119 * 119.97451 * 120.00299 * 4 2 1 27 27 H 1.09003 * 109.47069 * 299.99223 * 1 2 3 28 28 H 1.08997 * 109.47437 * 59.99717 * 1 2 3 29 29 H 1.09006 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47069 * 240.00776 * 2 1 3 31 31 H 1.09003 * 109.46529 * 60.00446 * 3 2 1 32 32 H 1.08997 * 109.47178 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47210 * 300.00422 * 3 2 1 34 34 H 1.07999 * 119.94149 * 359.97438 * 5 4 2 35 35 H 1.07994 * 119.96895 * 180.25999 * 6 5 4 36 36 H 1.08995 * 109.46633 * 134.51221 * 8 7 6 37 37 H 1.08998 * 109.46817 * 14.51760 * 8 7 6 38 38 H 1.09005 * 109.46819 * 315.60660 * 10 9 8 39 39 H 1.09001 * 109.46733 * 75.60407 * 10 9 8 40 40 H 0.96995 * 119.99890 * 179.97438 * 14 13 11 41 41 H 1.08999 * 110.67150 * 189.59250 * 19 9 8 42 42 H 1.09001 * 110.47462 * 37.64549 * 20 19 9 43 43 H 1.08991 * 110.53145 * 274.97611 * 20 19 9 44 44 H 1.08996 * 110.03116 * 217.13202 * 21 20 19 45 45 H 1.09009 * 110.03200 * 95.75605 * 21 20 19 46 46 H 1.08991 * 110.03529 * 119.25448 * 22 21 20 47 47 H 1.09004 * 110.02932 * 240.64365 * 22 21 20 48 48 H 1.08999 * 110.48965 * 142.29449 * 23 22 21 49 49 H 1.09010 * 110.48805 * 264.79850 * 23 22 21 50 50 H 0.96703 * 113.99539 * 89.99986 * 25 24 7 51 51 H 1.08002 * 120.02860 * 0.03706 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.6976 -0.2379 2.4862 6 6 2.1523 -0.8907 3.6168 7 6 2.9511 -2.0113 3.4946 8 6 3.4506 -2.7195 4.7275 9 7 4.8761 -2.4211 4.9199 10 6 5.0676 -1.0380 5.3761 11 6 6.5116 -0.6455 5.1978 12 1 7.1991 -1.3224 4.7123 13 6 6.9550 0.5776 5.6541 14 7 6.1179 1.4016 6.2455 15 14 8.7448 1.0643 5.4324 16 1 9.4735 -0.0300 4.7421 17 1 8.8236 2.3026 4.6165 18 1 9.3600 1.3076 6.7620 19 6 5.4920 -3.3736 5.8536 20 6 4.6154 -3.5537 7.1187 21 6 5.0196 -4.9390 7.6637 22 6 5.5924 -5.7304 6.4749 23 6 5.5159 -4.7988 5.2477 24 6 3.2883 -2.4874 2.2360 25 8 4.0695 -3.5927 2.1132 26 6 2.8265 -1.8334 1.1028 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.6766 1.9562 0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.0767 0.6404 2.5837 35 1 1.8860 -0.5221 4.5963 36 1 3.3173 -3.7946 4.6080 37 1 2.8874 -2.3779 5.5960 38 1 4.4348 -0.3712 4.7903 39 1 4.7980 -0.9623 6.4296 40 1 6.4299 2.2620 6.5669 41 1 6.4977 -3.0517 6.1238 42 1 3.5579 -3.5413 6.8547 43 1 4.8360 -2.7766 7.8504 44 1 4.1459 -5.4510 8.0669 45 1 5.7780 -4.8286 8.4388 46 1 6.6289 -6.0031 6.6725 47 1 4.9971 -6.6269 6.3016 48 1 6.3933 -4.9293 4.6143 49 1 4.6051 -4.9895 4.6799 50 1 3.5740 -4.4224 2.0772 51 1 3.0879 -2.2019 0.1218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237053592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:10 Heat of formation + Delta-G solvation = -55.760066 kcal Electronic energy + Delta-G solvation = -27809.374716 eV Core-core repulsion = 24285.870153 eV Total energy + Delta-G solvation = -3523.504563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13085 -39.80641 -38.09394 -36.56706 -35.51102 -34.42746 -31.71272 -30.68087 -29.63214 -29.31870 -27.95098 -27.75575 -26.01555 -24.01960 -23.35733 -22.95134 -21.11044 -20.97918 -20.16735 -18.58603 -18.32074 -17.42389 -17.02508 -16.71468 -16.55751 -16.39909 -15.83750 -15.39742 -14.85185 -14.82227 -14.61378 -14.47888 -14.34891 -14.23291 -14.09751 -13.81231 -13.44611 -13.15106 -12.90811 -12.82785 -12.65727 -12.61724 -12.54415 -12.37188 -12.17129 -12.07326 -12.00117 -11.93816 -11.80730 -11.68624 -11.55290 -11.38174 -11.25774 -11.08320 -11.01752 -10.59200 -9.63258 -9.24941 -8.79598 -8.18424 -6.27167 0.42153 0.47122 1.35457 1.36419 1.50104 2.38809 2.72863 3.12924 3.38294 3.42686 3.79038 3.84696 3.87778 3.91477 4.06131 4.13230 4.22665 4.29890 4.35549 4.48763 4.50728 4.59872 4.60381 4.63797 4.73338 4.77058 4.79930 4.83569 4.89188 4.94915 4.99755 5.02246 5.09239 5.12641 5.15390 5.21649 5.22817 5.24655 5.31503 5.34321 5.42056 5.43245 5.47008 5.55003 5.60276 5.67442 5.71854 5.74476 6.04420 6.14239 6.49505 6.73979 6.90644 7.06233 7.41690 8.91542 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009307 B = 0.004982 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.790656 B = 5619.260027 C = 7660.647055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.066 4.066 5 C -0.131 4.131 6 C -0.110 4.110 7 C -0.117 4.117 8 C 0.105 3.895 9 N -0.518 5.518 10 C 0.214 3.786 11 C -0.514 4.514 12 H 0.052 0.948 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.960 3.040 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.276 1.276 19 C 0.084 3.916 20 C -0.156 4.156 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.103 4.103 24 C 0.127 3.873 25 O -0.493 6.493 26 C -0.158 4.158 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.021 0.979 38 H 0.002 0.998 39 H -0.037 1.037 40 H 0.262 0.738 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.057 0.943 49 H 0.076 0.924 50 H 0.398 0.602 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -10.762 -8.930 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C -0.203 4.203 4 C -0.066 4.066 5 C -0.149 4.149 6 C -0.128 4.128 7 C -0.118 4.118 8 C -0.022 4.022 9 N -0.240 5.240 10 C 0.088 3.912 11 C -0.553 4.553 12 H 0.070 0.930 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.025 4.025 20 C -0.195 4.195 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.141 4.141 24 C 0.082 3.918 25 O -0.304 6.304 26 C -0.176 4.176 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.020 0.980 39 H -0.020 1.020 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.255 0.745 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.807 -10.252 -9.301 17.561 hybrid contribution 0.350 0.780 1.301 1.557 sum -10.457 -9.471 -8.000 16.219 Atomic orbital electron populations 1.21819 0.92927 1.02234 1.02563 1.20156 0.96960 0.95638 0.94256 1.21872 1.00484 0.95367 1.02553 1.19945 0.96576 0.94805 0.95287 1.21034 1.01800 1.00353 0.91746 1.21047 0.97892 0.94890 0.99002 1.20278 0.98230 0.98025 0.95271 1.20845 0.88993 0.99717 0.92682 1.62074 1.11781 1.03211 1.46946 1.19283 0.95613 0.85152 0.91135 1.21461 0.95718 1.01482 1.36600 0.92976 1.25808 1.02113 0.96439 0.95028 1.70087 1.36551 1.09721 1.41068 0.85470 0.79867 0.78191 0.77961 1.19129 1.20419 1.20166 1.22653 0.97121 0.92729 0.89997 1.22988 1.00312 0.97873 0.98361 1.22009 1.00960 0.94063 0.98037 1.22098 1.01472 0.98127 0.93629 1.22312 1.02069 0.92303 0.97426 1.18265 0.91772 0.90592 0.91205 1.84903 1.34333 1.15561 1.95598 1.21473 0.99665 0.97903 0.98553 0.92708 0.90753 0.92417 0.89503 0.92963 0.94145 0.90337 0.85009 0.87202 0.88712 0.96083 0.97994 1.01962 0.92898 0.92507 0.91390 0.94855 0.90376 0.92247 0.91587 0.89680 0.92400 0.90578 0.74450 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.01 71.98 0.65 -1.66 16 2 C -0.05 -1.08 3.09 -11.54 -0.04 -1.12 16 3 C -0.15 -3.14 9.01 71.98 0.65 -2.49 16 4 C -0.07 -1.83 4.78 -19.88 -0.10 -1.92 16 5 C -0.13 -4.04 8.71 22.28 0.19 -3.85 16 6 C -0.11 -3.93 8.81 22.25 0.20 -3.73 16 7 C -0.12 -4.28 4.72 -19.77 -0.09 -4.37 16 8 C 0.10 3.89 3.30 85.56 0.28 4.18 16 9 N -0.52 -23.15 4.39 -872.35 -3.83 -26.98 16 10 C 0.21 11.92 4.50 85.55 0.39 12.31 16 11 C -0.51 -30.85 8.37 25.60 0.21 -30.64 16 12 H 0.05 3.16 7.77 -2.91 -0.02 3.14 16 13 C 0.00 0.22 5.46 84.65 0.46 0.68 16 14 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 15 Si 0.96 46.64 29.54 68.60 2.03 48.66 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C 0.08 3.34 2.80 46.23 0.13 3.47 16 20 C -0.16 -5.48 5.57 31.69 0.18 -5.31 16 21 C -0.11 -2.98 6.80 31.32 0.21 -2.77 16 22 C -0.12 -2.77 6.80 31.32 0.21 -2.56 16 23 C -0.10 -3.12 6.33 31.67 0.20 -2.92 16 24 C 0.13 4.20 6.68 22.51 0.15 4.35 16 25 O -0.49 -14.85 12.84 -92.43 -1.19 -16.04 16 26 C -0.16 -4.62 9.61 22.36 0.21 -4.40 16 27 H 0.05 0.95 7.39 -2.39 -0.02 0.93 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 31 H 0.05 1.18 7.39 -2.39 -0.02 1.16 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.13 3.54 7.10 -2.91 -0.02 3.52 16 35 H 0.11 4.02 8.00 -2.91 -0.02 3.99 16 36 H 0.09 2.96 5.82 -2.39 -0.01 2.94 16 37 H 0.02 0.81 6.65 -2.39 -0.02 0.80 16 38 H 0.00 0.12 6.53 -2.38 -0.02 0.10 16 39 H -0.04 -2.26 7.38 -2.39 -0.02 -2.28 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.06 2.66 7.25 -2.39 -0.02 2.64 16 42 H 0.07 2.28 5.79 -2.39 -0.01 2.27 16 43 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16 44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.08 2.10 6.10 -2.38 -0.01 2.08 16 50 H 0.40 7.40 9.06 -74.06 -0.67 6.73 16 51 H 0.14 3.45 7.94 -2.91 -0.02 3.43 16 Total: -1.00 -71.99 393.25 1.63 -70.36 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.23 Total: 24.61 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 4.10 Total: -42.74 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -3.54 Total: -84.85 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.19 Total: -16.04 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -71.99 1.63 -70.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237053592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.596 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds