Wall clock time and date at job start Tue Mar 31 2020 11:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 120.02692 * 2 1 4 4 C 1.38246 * 120.05009 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.94288 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47053 * 89.99776 * 5 4 3 7 7 C 1.46845 * 111.00098 * 45.79442 * 6 5 4 8 8 C 1.53041 * 109.52599 * 185.83783 * 7 6 5 9 9 C 1.53118 * 109.27507 * 300.81662 * 8 7 6 10 10 C 1.53116 * 109.15841 * 57.65890 * 9 8 7 11 11 H 1.09000 * 109.54033 * 62.30336 * 10 9 8 12 12 C 1.50701 * 109.50065 * 182.40205 * 10 9 8 13 13 H 1.08005 * 120.00256 * 119.80408 * 12 10 9 14 14 C 1.37876 * 119.99727 * 299.79797 * 12 10 9 15 15 N 1.31512 * 120.00545 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99882 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47078 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46999 * 120.00124 * 16 14 12 19 19 H 1.48506 * 109.47131 * 240.00320 * 16 14 12 20 20 C 1.46847 * 110.99948 * 169.99965 * 6 5 4 21 21 C 1.38281 * 120.11321 * 359.97438 * 4 3 2 22 22 C 1.38129 * 120.05670 * 359.76558 * 21 4 3 23 23 C 1.38707 * 120.02468 * 179.97438 * 2 1 3 24 24 O 1.35903 * 120.05475 * 0.02562 * 23 2 1 25 25 C 1.42901 * 116.99525 * 174.85279 * 24 23 2 26 26 C 1.53001 * 109.47233 * 84.88957 * 25 24 23 27 27 C 1.53005 * 109.46856 * 204.88746 * 25 24 23 28 28 H 1.08998 * 109.47369 * 270.03012 * 1 2 3 29 29 H 1.09010 * 109.46638 * 30.02504 * 1 2 3 30 30 H 1.08995 * 109.47548 * 150.02355 * 1 2 3 31 31 H 1.07997 * 119.97291 * 359.95359 * 3 2 1 32 32 H 1.08999 * 109.47420 * 210.00050 * 5 4 3 33 33 H 1.09007 * 109.46982 * 330.00319 * 5 4 3 34 34 H 1.09004 * 109.45839 * 305.85279 * 7 6 5 35 35 H 1.09000 * 109.46443 * 65.81562 * 7 6 5 36 36 H 1.09003 * 109.50240 * 180.87562 * 8 7 6 37 37 H 1.09002 * 109.50229 * 60.76277 * 8 7 6 38 38 H 1.08997 * 109.52680 * 297.74792 * 9 8 7 39 39 H 1.09008 * 109.57107 * 177.59122 * 9 8 7 40 40 H 0.96997 * 120.00603 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.46769 * 294.18091 * 20 6 5 42 42 H 1.09003 * 109.46339 * 54.15117 * 20 6 5 43 43 H 1.07999 * 119.97315 * 180.02562 * 21 4 3 44 44 H 1.08002 * 120.02725 * 180.28256 * 22 21 4 45 45 H 1.08996 * 109.47381 * 324.88807 * 25 24 23 46 46 H 1.09009 * 109.46861 * 59.99916 * 26 25 24 47 47 H 1.08998 * 109.47137 * 179.97438 * 26 25 24 48 48 H 1.08991 * 109.47016 * 299.99937 * 26 25 24 49 49 H 1.09004 * 109.46661 * 60.00111 * 27 25 24 50 50 H 1.09000 * 109.46922 * 179.97438 * 27 25 24 51 51 H 1.08996 * 109.47175 * 300.00186 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.3325 2.5029 -0.0001 6 7 4.5762 2.9283 1.3847 7 6 5.0656 1.8096 2.2005 8 6 5.1693 2.2497 3.6625 9 6 6.1284 3.4388 3.7657 10 6 5.6217 4.5723 2.8695 11 1 4.6439 4.9039 3.2190 12 6 6.5913 5.7248 2.9195 13 1 7.0762 6.0623 2.0153 14 6 6.8594 6.3486 4.1195 15 7 6.2694 5.9376 5.2206 16 14 8.0609 7.7778 4.1813 17 1 8.5842 8.0438 2.8173 18 1 7.3652 8.9876 4.6887 19 1 9.1878 7.4383 5.0869 20 6 5.5049 4.0648 1.4304 21 6 4.2751 0.0009 0.0016 22 6 3.5885 -1.1976 0.0070 23 6 2.2011 -1.2009 0.0005 24 8 1.5232 -2.3788 0.0005 25 6 2.2988 -3.5736 -0.1131 26 6 2.7943 -3.9938 1.2721 27 6 1.4343 -4.6885 -0.7053 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5143 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6584 2.1315 -0.0008 32 1 5.2853 2.3737 -0.5134 33 1 3.7425 3.2615 -0.5146 34 1 4.3724 0.9721 2.1216 35 1 6.0484 1.5022 1.8431 36 1 5.5473 1.4239 4.2652 37 1 4.1842 2.5441 4.0247 38 1 7.1230 3.1340 3.4402 39 1 6.1729 3.7835 4.7989 40 1 6.4583 6.3762 6.0649 41 1 6.4857 3.7470 1.0767 42 1 5.1308 4.8655 0.7923 43 1 5.3551 0.0040 0.0024 44 1 4.1313 -2.1314 0.0125 45 1 3.1533 -3.3915 -0.7648 46 1 1.9397 -4.1760 1.9238 47 1 3.3855 -4.9054 1.1855 48 1 3.4101 -3.1996 1.6940 49 1 1.0813 -4.3891 -1.6922 50 1 2.0260 -5.5997 -0.7925 51 1 0.5798 -4.8706 -0.0537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237710562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:20 Heat of formation + Delta-G solvation = -30.075960 kcal Electronic energy + Delta-G solvation = -27034.659782 eV Core-core repulsion = 23512.268965 eV Total energy + Delta-G solvation = -3522.390817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54896 -38.76407 -37.37216 -34.30037 -33.28478 -32.41878 -31.88411 -30.17199 -29.51790 -27.62736 -26.86611 -25.56782 -24.87325 -23.34817 -21.96291 -21.40630 -20.97076 -20.02556 -18.56001 -18.18749 -16.37322 -16.26360 -15.68112 -15.29591 -15.08840 -14.68709 -14.49897 -14.36167 -13.81226 -13.57820 -13.46852 -13.22788 -13.12713 -12.94365 -12.78128 -12.63746 -12.48039 -12.31597 -12.31072 -12.10760 -11.70404 -11.67456 -11.41672 -11.27088 -11.10501 -10.94877 -10.86220 -10.64855 -10.57814 -10.54252 -10.01524 -9.78970 -9.42563 -9.02182 -8.73438 -8.65128 -8.27858 -8.01152 -7.53863 -5.94559 -4.00644 1.37061 1.44986 3.04958 3.31439 3.39459 3.43068 3.71935 4.44481 4.45030 4.58079 4.70167 4.74454 4.80839 4.83861 4.96429 5.15240 5.19218 5.34871 5.35479 5.36980 5.39618 5.44721 5.56174 5.62148 5.67572 5.70919 5.76088 5.80422 5.85839 5.88713 5.95401 5.99129 6.15609 6.22945 6.32227 6.36130 6.42932 6.46127 6.56539 6.74639 6.79810 6.80835 6.83542 7.01978 7.26935 7.38788 7.44524 7.73184 7.78895 7.86985 8.12617 8.21462 8.51698 9.03803 9.63504 11.11443 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.002565 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.889325 B =10914.572713 C =11258.530005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.120 4.120 3 C -0.063 4.063 4 C -0.103 4.103 5 C 0.094 3.906 6 N -0.532 5.532 7 C 0.061 3.939 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.067 3.933 21 C -0.079 4.079 22 C -0.207 4.207 23 C 0.123 3.877 24 O -0.309 6.309 25 C 0.077 3.923 26 C -0.181 4.181 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.019 0.981 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.090 0.910 40 H 0.259 0.741 41 H 0.018 0.982 42 H 0.059 0.941 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.075 0.925 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 -19.511 -11.555 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.103 4.103 5 C -0.033 4.033 6 N -0.256 5.256 7 C -0.067 4.067 8 C -0.155 4.155 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.052 0.948 12 C -0.552 4.552 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.059 4.059 21 C -0.098 4.098 22 C -0.226 4.226 23 C 0.078 3.922 24 O -0.224 6.224 25 C 0.020 3.980 26 C -0.238 4.238 27 C -0.205 4.205 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.138 0.862 44 H 0.143 0.857 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.582 -19.345 -11.157 24.301 hybrid contribution 1.871 0.397 -0.158 1.919 sum -7.712 -18.948 -11.315 23.378 Atomic orbital electron populations 1.20571 0.90725 1.02348 1.02199 1.19234 0.96357 0.90273 1.06207 1.20783 0.93347 0.96818 0.97207 1.19750 0.93819 0.94770 1.01981 1.21035 0.97656 0.93046 0.91569 1.62160 1.48156 1.07649 1.07661 1.22125 0.96740 0.93057 0.94755 1.21676 1.01189 0.98817 0.93820 1.21647 0.95185 0.93543 1.04441 1.18663 0.97154 0.92609 0.87945 0.94752 1.21192 1.25221 1.14979 0.93808 0.92815 1.24939 0.96113 0.97059 0.95781 1.69903 1.42979 1.41120 0.98701 0.86583 0.81093 0.82608 0.77970 1.19877 1.21055 1.21135 1.22333 0.91418 0.90685 1.01506 1.20853 0.99600 0.91440 0.97894 1.21154 0.92975 0.99008 1.09446 1.18730 0.90305 0.85395 0.97748 1.86091 1.35998 1.12147 1.88145 1.22394 0.94544 0.83813 0.97212 1.22389 1.02245 1.02221 0.96979 1.21845 1.00499 0.96608 1.01527 0.91519 0.91787 0.91550 0.85174 0.94784 0.90372 0.91763 0.96319 0.93769 0.92186 0.95282 0.89192 0.93142 0.96336 0.92252 0.86238 0.85657 0.91041 0.91439 0.91178 0.91602 0.91748 0.90664 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.79 36.01 0.35 -0.73 16 2 C -0.12 -1.54 5.89 -104.47 -0.62 -2.15 16 3 C -0.06 -0.85 9.35 -39.60 -0.37 -1.22 16 4 C -0.10 -1.45 4.13 -104.60 -0.43 -1.88 16 5 C 0.09 1.47 5.43 -4.98 -0.03 1.44 16 6 N -0.53 -10.04 4.80 -236.11 -1.13 -11.18 16 7 C 0.06 1.12 4.57 -3.83 -0.02 1.11 16 8 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 9 C -0.11 -2.66 5.03 -26.61 -0.13 -2.80 16 10 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 11 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.51 -14.18 8.56 -34.44 -0.29 -14.48 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 15 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.07 1.45 4.65 -3.83 -0.02 1.43 16 21 C -0.08 -1.04 7.78 -39.61 -0.31 -1.35 16 22 C -0.21 -2.50 8.24 -39.43 -0.32 -2.82 16 23 C 0.12 1.55 6.57 -39.22 -0.26 1.29 16 24 O -0.31 -3.53 8.85 -19.44 -0.17 -3.70 16 25 C 0.08 0.65 2.85 -26.73 -0.08 0.57 16 26 C -0.18 -1.42 9.17 37.16 0.34 -1.08 16 27 C -0.15 -0.94 9.56 37.16 0.36 -0.59 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 30 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.03 0.52 8.02 -51.93 -0.42 0.10 16 33 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.06 1.11 5.64 -51.93 -0.29 0.82 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.42 6.16 -51.92 -0.32 2.10 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.13 1.26 5.43 -52.49 -0.28 0.97 16 45 H 0.07 0.57 6.32 -51.93 -0.33 0.24 16 46 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.60 6.90 -51.93 -0.36 0.24 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -29.41 391.26 -11.20 -40.61 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -9.11 Total: -0.07 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.29 Total: -22.98 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.50 Total: -36.14 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.17 Total: -3.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.41 -11.20 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237710562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.538 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds