Wall clock time and date at job start Tue Mar 31 2020 11:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 120.02692 * 2 1 4 4 C 1.38246 * 120.05009 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.94288 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47053 * 89.99776 * 5 4 3 7 7 C 1.46845 * 111.00098 * 45.79442 * 6 5 4 8 8 C 1.53041 * 109.52599 * 185.83783 * 7 6 5 9 9 C 1.53118 * 109.27507 * 300.81662 * 8 7 6 10 10 C 1.53116 * 109.15841 * 57.65890 * 9 8 7 11 11 H 1.09000 * 109.54033 * 62.30336 * 10 9 8 12 12 C 1.50701 * 109.50065 * 182.40205 * 10 9 8 13 13 H 1.08005 * 120.00256 * 119.80408 * 12 10 9 14 14 C 1.37876 * 119.99727 * 299.79797 * 12 10 9 15 15 N 1.31512 * 120.00545 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99882 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47078 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46999 * 120.00124 * 16 14 12 19 19 H 1.48506 * 109.47131 * 240.00320 * 16 14 12 20 20 C 1.46847 * 110.99948 * 169.99965 * 6 5 4 21 21 C 1.38281 * 120.11321 * 359.97438 * 4 3 2 22 22 C 1.38129 * 120.05670 * 359.76558 * 21 4 3 23 23 C 1.38707 * 120.02468 * 179.97438 * 2 1 3 24 24 O 1.35903 * 120.05475 * 0.02562 * 23 2 1 25 25 C 1.42901 * 116.99525 * 174.85279 * 24 23 2 26 26 C 1.53001 * 109.47233 * 84.88957 * 25 24 23 27 27 C 1.53005 * 109.46856 * 204.88746 * 25 24 23 28 28 H 1.08998 * 109.47369 * 270.03012 * 1 2 3 29 29 H 1.09010 * 109.46638 * 30.02504 * 1 2 3 30 30 H 1.08995 * 109.47548 * 150.02355 * 1 2 3 31 31 H 1.07997 * 119.97291 * 359.95359 * 3 2 1 32 32 H 1.08999 * 109.47420 * 210.00050 * 5 4 3 33 33 H 1.09007 * 109.46982 * 330.00319 * 5 4 3 34 34 H 1.09004 * 109.45839 * 305.85279 * 7 6 5 35 35 H 1.09000 * 109.46443 * 65.81562 * 7 6 5 36 36 H 1.09003 * 109.50240 * 180.87562 * 8 7 6 37 37 H 1.09002 * 109.50229 * 60.76277 * 8 7 6 38 38 H 1.08997 * 109.52680 * 297.74792 * 9 8 7 39 39 H 1.09008 * 109.57107 * 177.59122 * 9 8 7 40 40 H 0.96997 * 120.00603 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.46769 * 294.18091 * 20 6 5 42 42 H 1.09003 * 109.46339 * 54.15117 * 20 6 5 43 43 H 1.07999 * 119.97315 * 180.02562 * 21 4 3 44 44 H 1.08002 * 120.02725 * 180.28256 * 22 21 4 45 45 H 1.08996 * 109.47381 * 324.88807 * 25 24 23 46 46 H 1.09009 * 109.46861 * 59.99916 * 26 25 24 47 47 H 1.08998 * 109.47137 * 179.97438 * 26 25 24 48 48 H 1.08991 * 109.47016 * 299.99937 * 26 25 24 49 49 H 1.09004 * 109.46661 * 60.00111 * 27 25 24 50 50 H 1.09000 * 109.46922 * 179.97438 * 27 25 24 51 51 H 1.08996 * 109.47175 * 300.00186 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.3325 2.5029 -0.0001 6 7 4.5762 2.9283 1.3847 7 6 5.0656 1.8096 2.2005 8 6 5.1693 2.2497 3.6625 9 6 6.1284 3.4388 3.7657 10 6 5.6217 4.5723 2.8695 11 1 4.6439 4.9039 3.2190 12 6 6.5913 5.7248 2.9195 13 1 7.0762 6.0623 2.0153 14 6 6.8594 6.3486 4.1195 15 7 6.2694 5.9376 5.2206 16 14 8.0609 7.7778 4.1813 17 1 8.5842 8.0438 2.8173 18 1 7.3652 8.9876 4.6887 19 1 9.1878 7.4383 5.0869 20 6 5.5049 4.0648 1.4304 21 6 4.2751 0.0009 0.0016 22 6 3.5885 -1.1976 0.0070 23 6 2.2011 -1.2009 0.0005 24 8 1.5232 -2.3788 0.0005 25 6 2.2988 -3.5736 -0.1131 26 6 2.7943 -3.9938 1.2721 27 6 1.4343 -4.6885 -0.7053 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5143 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6584 2.1315 -0.0008 32 1 5.2853 2.3737 -0.5134 33 1 3.7425 3.2615 -0.5146 34 1 4.3724 0.9721 2.1216 35 1 6.0484 1.5022 1.8431 36 1 5.5473 1.4239 4.2652 37 1 4.1842 2.5441 4.0247 38 1 7.1230 3.1340 3.4402 39 1 6.1729 3.7835 4.7989 40 1 6.4583 6.3762 6.0649 41 1 6.4857 3.7470 1.0767 42 1 5.1308 4.8655 0.7923 43 1 5.3551 0.0040 0.0024 44 1 4.1313 -2.1314 0.0125 45 1 3.1533 -3.3915 -0.7648 46 1 1.9397 -4.1760 1.9238 47 1 3.3855 -4.9054 1.1855 48 1 3.4101 -3.1996 1.6940 49 1 1.0813 -4.3891 -1.6922 50 1 2.0260 -5.5997 -0.7925 51 1 0.5798 -4.8706 -0.0537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237710562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:19 Heat of formation + Delta-G solvation = -44.578045 kcal Electronic energy + Delta-G solvation = -27035.288639 eV Core-core repulsion = 23512.268965 eV Total energy + Delta-G solvation = -3523.019675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47302 -40.06305 -38.58660 -35.79832 -34.46298 -33.53958 -33.23424 -31.75530 -30.99252 -28.19739 -27.83158 -26.94006 -26.73806 -24.31964 -23.54405 -22.98337 -21.78690 -21.15834 -20.32782 -19.03861 -18.41997 -17.17848 -16.90953 -16.51745 -16.31045 -16.19247 -15.60292 -15.52095 -14.97513 -14.88299 -14.83217 -14.56652 -14.26563 -14.08597 -13.97575 -13.81861 -13.48086 -13.37399 -13.23147 -13.10327 -12.94192 -12.87454 -12.74030 -12.68787 -12.56284 -12.39048 -12.14412 -11.99484 -11.82790 -11.71230 -11.55975 -11.44214 -11.36214 -10.86452 -10.65046 -10.37593 -9.71460 -9.19784 -8.84083 -8.07287 -6.21504 0.39919 0.44827 1.40552 1.42151 1.53587 2.28427 2.43053 2.69439 3.19662 3.31040 3.79853 3.81626 3.88042 3.91840 4.01798 4.18274 4.21218 4.22757 4.31588 4.39948 4.42782 4.47257 4.60165 4.66348 4.69468 4.72699 4.76248 4.79699 4.83500 4.85853 4.89157 4.89590 4.94502 4.98339 5.02346 5.12004 5.18820 5.22657 5.26951 5.31514 5.37831 5.40746 5.49603 5.53009 5.64245 5.73343 5.88554 5.97415 6.13314 6.21955 6.35388 6.47020 6.53214 6.91570 7.46407 8.97690 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.002565 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.889325 B =10914.572713 C =11258.530005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.132 4.132 3 C -0.071 4.071 4 C -0.118 4.118 5 C 0.098 3.902 6 N -0.542 5.542 7 C 0.071 3.929 8 C -0.111 4.111 9 C -0.102 4.102 10 C 0.053 3.947 11 H -0.004 1.004 12 C -0.534 4.534 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.081 3.919 21 C -0.084 4.084 22 C -0.206 4.206 23 C 0.121 3.879 24 O -0.319 6.319 25 C 0.067 3.933 26 C -0.179 4.179 27 C -0.144 4.144 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.260 0.740 41 H 0.017 0.983 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -21.189 -12.767 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.028 4.028 6 N -0.267 5.267 7 C -0.057 4.057 8 C -0.149 4.149 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.014 0.986 12 C -0.572 4.572 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.046 4.046 21 C -0.102 4.102 22 C -0.224 4.224 23 C 0.075 3.925 24 O -0.234 6.234 25 C 0.012 3.988 26 C -0.236 4.236 27 C -0.201 4.201 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.163 0.837 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.115 0.885 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.382 -21.040 -12.385 26.155 hybrid contribution 1.742 0.831 0.213 1.942 sum -7.640 -20.209 -12.172 24.798 Atomic orbital electron populations 1.20577 0.89490 1.03084 1.02392 1.19493 0.97464 0.90284 1.06064 1.20884 0.93301 0.97365 0.97371 1.19655 0.94040 0.94341 1.03776 1.21027 0.98293 0.94159 0.89351 1.62067 1.47142 1.07360 1.10110 1.22029 0.97501 0.93159 0.92986 1.21596 0.99377 0.97887 0.96046 1.21452 0.95828 0.94707 1.02066 1.18583 0.94609 0.92760 0.90627 0.98603 1.21551 1.25740 1.16016 0.93926 0.92917 1.25740 0.97807 0.99632 0.95442 1.70048 1.44158 1.42241 0.99153 0.85554 0.78853 0.79309 0.78211 1.19082 1.20669 1.20646 1.22003 0.92041 0.91873 0.98686 1.20970 1.00045 0.91414 0.97816 1.21351 0.92940 0.99497 1.08609 1.18894 0.90645 0.85902 0.97055 1.86095 1.36856 1.12555 1.87878 1.22696 0.95060 0.83214 0.97840 1.22379 1.02105 1.02716 0.96385 1.21865 1.00483 0.96648 1.01137 0.91518 0.90652 0.91231 0.84879 0.94161 0.89763 0.90097 0.95730 0.91616 0.93503 0.95827 0.92437 0.93097 0.96485 0.92207 0.85501 0.83701 0.90413 0.91913 0.89001 0.92944 0.91890 0.88476 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.79 71.24 0.70 -1.28 16 2 C -0.13 -3.22 5.89 -19.77 -0.12 -3.34 16 3 C -0.07 -1.83 9.35 22.26 0.21 -1.62 16 4 C -0.12 -3.16 4.13 -19.85 -0.08 -3.25 16 5 C 0.10 2.94 5.43 85.56 0.46 3.41 16 6 N -0.54 -20.18 4.80 -900.92 -4.32 -24.50 16 7 C 0.07 2.52 4.57 86.33 0.39 2.92 16 8 C -0.11 -4.53 6.09 30.65 0.19 -4.34 16 9 C -0.10 -5.06 5.03 30.67 0.15 -4.91 16 10 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 11 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 12 C -0.53 -30.07 8.56 25.60 0.22 -29.85 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.01 0.70 5.31 84.65 0.45 1.15 16 15 N -0.92 -54.17 11.36 21.45 0.24 -53.92 16 16 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 C 0.08 3.52 4.65 86.33 0.40 3.92 16 21 C -0.08 -2.04 7.78 22.25 0.17 -1.87 16 22 C -0.21 -4.53 8.24 22.37 0.18 -4.34 16 23 C 0.12 2.83 6.57 22.50 0.15 2.98 16 24 O -0.32 -6.74 8.85 -92.46 -0.82 -7.56 16 25 C 0.07 0.99 2.85 30.60 0.09 1.08 16 26 C -0.18 -2.41 9.17 71.98 0.66 -1.75 16 27 C -0.14 -1.50 9.56 71.98 0.69 -0.81 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.30 8.09 -2.38 -0.02 1.28 16 30 H 0.07 1.33 7.53 -2.39 -0.02 1.31 16 31 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.04 1.16 8.02 -2.39 -0.02 1.14 16 33 H 0.08 2.39 8.08 -2.38 -0.02 2.37 16 34 H 0.08 2.66 5.64 -2.38 -0.01 2.64 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 3.21 6.16 -2.38 -0.01 3.19 16 40 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16 43 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 44 H 0.15 2.53 5.43 -2.91 -0.02 2.51 16 45 H 0.08 1.04 6.32 -2.39 -0.02 1.03 16 46 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 48 H 0.05 0.85 6.90 -2.39 -0.02 0.84 16 49 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -63.86 391.26 2.90 -60.96 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.88 Total: 17.89 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 4.89 Total: -39.16 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -4.08 Total: -78.43 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.82 Total: -7.56 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -63.86 2.90 -60.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237710562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.386 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds