Wall clock time and date at job start Tue Mar 31 2020 11:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 120.02393 * 2 1 4 4 C 1.38249 * 120.05338 * 180.24891 * 3 2 1 5 5 C 1.50694 * 119.94648 * 179.77111 * 4 3 2 6 6 N 1.46907 * 109.47165 * 269.98178 * 5 4 3 7 7 C 1.46850 * 110.99673 * 294.21066 * 6 5 4 8 8 C 1.53040 * 109.52149 * 174.16113 * 7 6 5 9 9 C 1.53120 * 109.27917 * 59.17750 * 8 7 6 10 10 C 1.53120 * 109.15897 * 302.34388 * 9 8 7 11 11 H 1.08993 * 109.50517 * 297.71201 * 10 9 8 12 12 C 1.50699 * 109.50188 * 177.59761 * 10 9 8 13 13 H 1.08005 * 120.00171 * 275.32759 * 12 10 9 14 14 C 1.37875 * 120.00196 * 95.32437 * 12 10 9 15 15 N 1.31519 * 119.99989 * 174.70314 * 14 12 10 16 16 Si 1.86797 * 120.00078 * 354.70229 * 14 12 10 17 17 H 1.48503 * 109.46828 * 94.33413 * 16 14 12 18 18 H 1.48496 * 109.46948 * 214.33459 * 16 14 12 19 19 H 1.48501 * 109.46952 * 334.33824 * 16 14 12 20 20 C 1.46842 * 111.00091 * 169.99951 * 6 5 4 21 21 C 1.38289 * 120.11021 * 359.75415 * 4 3 2 22 22 C 1.38125 * 120.05699 * 359.96813 * 21 4 3 23 23 C 1.38707 * 120.02667 * 179.72560 * 2 1 3 24 24 O 1.35892 * 120.06034 * 0.02562 * 23 2 1 25 25 C 1.42900 * 117.00200 * 174.47448 * 24 23 2 26 26 C 1.53001 * 109.46861 * 85.18827 * 25 24 23 27 27 C 1.53001 * 109.47048 * 205.18587 * 25 24 23 28 28 H 1.08995 * 109.47456 * 270.27492 * 1 2 3 29 29 H 1.09005 * 109.47304 * 30.27655 * 1 2 3 30 30 H 1.08998 * 109.46871 * 150.27323 * 1 2 3 31 31 H 1.07998 * 119.97716 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47250 * 29.97437 * 5 4 3 33 33 H 1.09001 * 109.47556 * 149.98486 * 5 4 3 34 34 H 1.09004 * 109.46277 * 294.17198 * 7 6 5 35 35 H 1.08993 * 109.46286 * 54.14158 * 7 6 5 36 36 H 1.09001 * 109.50056 * 299.23471 * 8 7 6 37 37 H 1.08998 * 109.53564 * 179.13625 * 8 7 6 38 38 H 1.09002 * 109.51992 * 182.44367 * 9 8 7 39 39 H 1.08996 * 109.57484 * 62.28003 * 9 8 7 40 40 H 0.96993 * 120.00022 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.46683 * 305.85225 * 20 6 5 42 42 H 1.09002 * 109.46586 * 65.82663 * 20 6 5 43 43 H 1.07993 * 119.97315 * 180.02562 * 21 4 3 44 44 H 1.07990 * 120.02963 * 180.02562 * 22 21 4 45 45 H 1.08992 * 109.47179 * 325.18299 * 25 24 23 46 46 H 1.09007 * 109.46932 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.46905 * 299.99757 * 26 25 24 48 48 H 1.08998 * 109.47649 * 60.00172 * 26 25 24 49 49 H 1.08996 * 109.47308 * 59.99817 * 27 25 24 50 50 H 1.08998 * 109.47167 * 180.02562 * 27 25 24 51 51 H 1.09004 * 109.47150 * 300.00137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0052 5 6 4.3324 2.5031 -0.0104 6 7 4.5718 2.9248 -1.3971 7 6 5.4763 1.9924 -2.0819 8 6 5.5873 2.3792 -3.5585 9 6 6.1210 3.8102 -3.6676 10 6 5.1870 4.7543 -2.9054 11 1 4.1972 4.7335 -3.3615 12 6 5.7366 6.1565 -2.9580 13 1 6.4798 6.4724 -2.2408 14 6 5.2909 7.0360 -3.9216 15 7 5.6914 8.2886 -3.9045 16 14 4.1181 6.4486 -5.2516 17 1 2.7196 6.7265 -4.8363 18 1 4.4093 7.1643 -6.5197 19 1 4.2929 4.9882 -5.4559 20 6 5.0876 4.2987 -1.4478 21 6 4.2752 0.0011 -0.0053 22 6 3.5887 -1.1975 0.0005 23 6 2.2011 -1.2009 0.0058 24 8 1.5235 -2.3788 0.0109 25 6 2.2984 -3.5737 -0.1060 26 6 2.7956 -3.9964 1.2779 27 6 1.4327 -4.6871 -0.6989 28 1 -0.3634 0.0049 1.0276 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6584 2.1316 -0.0004 32 1 3.7440 3.2630 0.5039 33 1 5.2868 2.3752 0.5003 34 1 6.4624 2.0375 -1.6196 35 1 5.0831 0.9792 -2.0004 36 1 4.6038 2.3210 -4.0248 37 1 6.2706 1.6965 -4.0637 38 1 6.1607 4.1052 -4.7162 39 1 7.1209 3.8609 -3.2367 40 1 5.3775 8.9075 -4.5821 41 1 4.4121 4.9605 -0.9058 42 1 6.0755 4.3330 -0.9885 43 1 5.3551 0.0042 -0.0089 44 1 4.1314 -2.1311 0.0009 45 1 3.1520 -3.3907 -0.7585 46 1 3.3871 -4.9077 1.1887 47 1 3.4123 -3.2032 1.7003 48 1 1.9419 -4.1794 1.9304 49 1 1.0784 -4.3860 -1.6848 50 1 2.0236 -5.5987 -0.7876 51 1 0.5789 -4.8701 -0.0464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237710563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:22 Heat of formation + Delta-G solvation = -31.415602 kcal Electronic energy + Delta-G solvation = -26994.032619 eV Core-core repulsion = 23471.583711 eV Total energy + Delta-G solvation = -3522.448908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55096 -38.79814 -37.55496 -34.33439 -33.28271 -32.44916 -32.14446 -30.27224 -30.05643 -27.67337 -26.93681 -25.67653 -24.94395 -23.37075 -22.21830 -21.29162 -20.98281 -20.12709 -18.72707 -18.24193 -16.84525 -16.30009 -15.71252 -15.52637 -15.17703 -14.77141 -14.56133 -14.13470 -13.88854 -13.69077 -13.51229 -13.45950 -13.25292 -13.05577 -12.83206 -12.67430 -12.51237 -12.48437 -12.38107 -12.27131 -12.06878 -11.79830 -11.41741 -11.35467 -11.13788 -11.04146 -10.96129 -10.83088 -10.67404 -10.55341 -10.11035 -9.78828 -9.52499 -9.26667 -8.93219 -8.74988 -8.46369 -8.05418 -7.70844 -6.04934 -4.03652 1.34214 1.42689 3.02052 3.33704 3.42298 3.48299 3.68487 4.41522 4.47324 4.53531 4.58755 4.67683 4.76272 4.80262 4.95082 5.12309 5.15074 5.26470 5.32155 5.32825 5.34518 5.40504 5.49223 5.57423 5.58760 5.63221 5.64432 5.71558 5.74992 5.79457 5.85553 5.92584 5.94127 6.06966 6.19334 6.22703 6.31650 6.36930 6.41192 6.46744 6.54807 6.71763 6.74256 6.81039 6.87938 6.95324 7.34858 7.36743 7.50516 7.64689 7.67321 7.90935 8.56364 9.00219 9.59484 11.08326 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.002764 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.967122 B =10128.586052 C =10280.138641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.119 4.119 3 C -0.062 4.062 4 C -0.099 4.099 5 C 0.095 3.905 6 N -0.536 5.536 7 C 0.060 3.940 8 C -0.120 4.120 9 C -0.114 4.114 10 C 0.022 3.978 11 H 0.039 0.961 12 C -0.511 4.511 13 H 0.070 0.930 14 C 0.071 3.929 15 N -0.902 5.902 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.259 1.259 20 C 0.073 3.927 21 C -0.081 4.081 22 C -0.208 4.208 23 C 0.123 3.877 24 O -0.310 6.310 25 C 0.076 3.924 26 C -0.179 4.179 27 C -0.148 4.148 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.024 0.976 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.023 0.977 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -24.879 9.253 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.099 4.099 5 C -0.033 4.033 6 N -0.261 5.261 7 C -0.068 4.068 8 C -0.158 4.158 9 C -0.152 4.152 10 C 0.003 3.997 11 H 0.057 0.943 12 C -0.550 4.550 13 H 0.088 0.912 14 C -0.130 4.130 15 N -0.540 5.540 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.183 1.183 20 C -0.053 4.053 21 C -0.099 4.099 22 C -0.226 4.226 23 C 0.078 3.922 24 O -0.224 6.224 25 C 0.020 3.980 26 C -0.237 4.237 27 C -0.205 4.205 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.041 0.959 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.867 -24.732 8.928 27.445 hybrid contribution 0.592 -0.231 -0.367 0.734 sum -7.275 -24.962 8.561 27.374 Atomic orbital electron populations 1.20576 0.90747 1.02649 1.01940 1.19236 0.96350 0.90283 1.06140 1.20788 0.93419 0.96792 0.97017 1.19736 0.93728 0.94690 1.01768 1.20973 0.97857 0.93556 0.90890 1.62064 1.47641 1.03527 1.12869 1.22062 0.93596 0.95914 0.95202 1.21669 1.00884 0.98358 0.94843 1.21905 0.99657 0.92843 1.00804 1.19133 0.95601 0.94464 0.90539 0.94298 1.20964 1.24263 0.93954 1.15789 0.91170 1.25042 0.95930 0.94503 0.97533 1.69921 1.45431 1.03550 1.35110 0.86862 0.81471 0.79742 0.81580 1.20436 1.21738 1.18312 1.22256 0.96908 0.85892 1.00276 1.20821 0.99485 0.91439 0.98185 1.21149 0.92974 0.99002 1.09505 1.18735 0.90325 0.85394 0.97764 1.86089 1.36069 1.12143 1.88094 1.22396 0.94650 0.83834 0.97133 1.22377 1.02120 1.02128 0.97057 1.21848 1.00446 0.96604 1.01637 0.91727 0.91625 0.91476 0.85240 0.90131 0.94632 0.95786 0.91645 0.92092 0.93125 0.92994 0.93305 0.92750 0.91378 0.95855 0.86257 0.85712 0.90947 0.91176 0.91764 0.91509 0.91636 0.90655 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.79 36.01 0.35 -0.73 16 2 C -0.12 -1.50 5.89 -104.47 -0.62 -2.12 16 3 C -0.06 -0.81 9.35 -39.60 -0.37 -1.18 16 4 C -0.10 -1.34 4.89 -104.60 -0.51 -1.85 16 5 C 0.09 1.39 5.12 -4.98 -0.03 1.37 16 6 N -0.54 -9.46 4.65 -236.11 -1.10 -10.56 16 7 C 0.06 1.00 5.15 -3.83 -0.02 0.98 16 8 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 9 C -0.11 -2.43 5.07 -26.61 -0.13 -2.57 16 10 C 0.02 0.52 1.80 -91.69 -0.17 0.35 16 11 H 0.04 0.96 5.61 -51.93 -0.29 0.67 16 12 C -0.51 -14.25 8.86 -34.44 -0.31 -14.56 16 13 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 16 Si 0.88 21.81 26.59 -169.99 -4.52 17.29 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.18 6.05 56.52 0.34 -5.84 16 20 C 0.07 1.50 4.73 -3.83 -0.02 1.49 16 21 C -0.08 -1.00 7.87 -39.60 -0.31 -1.31 16 22 C -0.21 -2.39 8.26 -39.43 -0.33 -2.71 16 23 C 0.12 1.50 6.57 -39.22 -0.26 1.25 16 24 O -0.31 -3.45 8.84 -19.40 -0.17 -3.62 16 25 C 0.08 0.62 2.84 -26.73 -0.08 0.55 16 26 C -0.18 -1.24 9.18 37.16 0.34 -0.90 16 27 C -0.15 -0.94 9.56 37.16 0.36 -0.59 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 33 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.99 5.75 -51.93 -0.30 0.70 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.16 7.08 -51.93 -0.37 0.79 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 44 H 0.13 1.18 5.45 -52.49 -0.29 0.89 16 45 H 0.07 0.58 6.29 -51.93 -0.33 0.25 16 46 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.06 0.50 6.95 -51.93 -0.36 0.14 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -30.67 389.49 -10.59 -41.26 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -9.10 Total: -0.52 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.35 Total: -22.88 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.32 Total: -37.40 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.17 Total: -3.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.52 Total: 17.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.67 -10.59 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237710563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.849 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds