Wall clock time and date at job start Tue Mar 31 2020 11:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 120.02393 * 2 1 4 4 C 1.38249 * 120.05338 * 180.24891 * 3 2 1 5 5 C 1.50694 * 119.94648 * 179.77111 * 4 3 2 6 6 N 1.46907 * 109.47165 * 269.98178 * 5 4 3 7 7 C 1.46850 * 110.99673 * 294.21066 * 6 5 4 8 8 C 1.53040 * 109.52149 * 174.16113 * 7 6 5 9 9 C 1.53120 * 109.27917 * 59.17750 * 8 7 6 10 10 C 1.53120 * 109.15897 * 302.34388 * 9 8 7 11 11 H 1.08993 * 109.50517 * 297.71201 * 10 9 8 12 12 C 1.50699 * 109.50188 * 177.59761 * 10 9 8 13 13 H 1.08005 * 120.00171 * 275.32759 * 12 10 9 14 14 C 1.37875 * 120.00196 * 95.32437 * 12 10 9 15 15 N 1.31519 * 119.99989 * 174.70314 * 14 12 10 16 16 Si 1.86797 * 120.00078 * 354.70229 * 14 12 10 17 17 H 1.48503 * 109.46828 * 94.33413 * 16 14 12 18 18 H 1.48496 * 109.46948 * 214.33459 * 16 14 12 19 19 H 1.48501 * 109.46952 * 334.33824 * 16 14 12 20 20 C 1.46842 * 111.00091 * 169.99951 * 6 5 4 21 21 C 1.38289 * 120.11021 * 359.75415 * 4 3 2 22 22 C 1.38125 * 120.05699 * 359.96813 * 21 4 3 23 23 C 1.38707 * 120.02667 * 179.72560 * 2 1 3 24 24 O 1.35892 * 120.06034 * 0.02562 * 23 2 1 25 25 C 1.42900 * 117.00200 * 174.47448 * 24 23 2 26 26 C 1.53001 * 109.46861 * 85.18827 * 25 24 23 27 27 C 1.53001 * 109.47048 * 205.18587 * 25 24 23 28 28 H 1.08995 * 109.47456 * 270.27492 * 1 2 3 29 29 H 1.09005 * 109.47304 * 30.27655 * 1 2 3 30 30 H 1.08998 * 109.46871 * 150.27323 * 1 2 3 31 31 H 1.07998 * 119.97716 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47250 * 29.97437 * 5 4 3 33 33 H 1.09001 * 109.47556 * 149.98486 * 5 4 3 34 34 H 1.09004 * 109.46277 * 294.17198 * 7 6 5 35 35 H 1.08993 * 109.46286 * 54.14158 * 7 6 5 36 36 H 1.09001 * 109.50056 * 299.23471 * 8 7 6 37 37 H 1.08998 * 109.53564 * 179.13625 * 8 7 6 38 38 H 1.09002 * 109.51992 * 182.44367 * 9 8 7 39 39 H 1.08996 * 109.57484 * 62.28003 * 9 8 7 40 40 H 0.96993 * 120.00022 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.46683 * 305.85225 * 20 6 5 42 42 H 1.09002 * 109.46586 * 65.82663 * 20 6 5 43 43 H 1.07993 * 119.97315 * 180.02562 * 21 4 3 44 44 H 1.07990 * 120.02963 * 180.02562 * 22 21 4 45 45 H 1.08992 * 109.47179 * 325.18299 * 25 24 23 46 46 H 1.09007 * 109.46932 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.46905 * 299.99757 * 26 25 24 48 48 H 1.08998 * 109.47649 * 60.00172 * 26 25 24 49 49 H 1.08996 * 109.47308 * 59.99817 * 27 25 24 50 50 H 1.08998 * 109.47167 * 180.02562 * 27 25 24 51 51 H 1.09004 * 109.47150 * 300.00137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0052 5 6 4.3324 2.5031 -0.0104 6 7 4.5718 2.9248 -1.3971 7 6 5.4763 1.9924 -2.0819 8 6 5.5873 2.3792 -3.5585 9 6 6.1210 3.8102 -3.6676 10 6 5.1870 4.7543 -2.9054 11 1 4.1972 4.7335 -3.3615 12 6 5.7366 6.1565 -2.9580 13 1 6.4798 6.4724 -2.2408 14 6 5.2909 7.0360 -3.9216 15 7 5.6914 8.2886 -3.9045 16 14 4.1181 6.4486 -5.2516 17 1 2.7196 6.7265 -4.8363 18 1 4.4093 7.1643 -6.5197 19 1 4.2929 4.9882 -5.4559 20 6 5.0876 4.2987 -1.4478 21 6 4.2752 0.0011 -0.0053 22 6 3.5887 -1.1975 0.0005 23 6 2.2011 -1.2009 0.0058 24 8 1.5235 -2.3788 0.0109 25 6 2.2984 -3.5737 -0.1060 26 6 2.7956 -3.9964 1.2779 27 6 1.4327 -4.6871 -0.6989 28 1 -0.3634 0.0049 1.0276 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6584 2.1316 -0.0004 32 1 3.7440 3.2630 0.5039 33 1 5.2868 2.3752 0.5003 34 1 6.4624 2.0375 -1.6196 35 1 5.0831 0.9792 -2.0004 36 1 4.6038 2.3210 -4.0248 37 1 6.2706 1.6965 -4.0637 38 1 6.1607 4.1052 -4.7162 39 1 7.1209 3.8609 -3.2367 40 1 5.3775 8.9075 -4.5821 41 1 4.4121 4.9605 -0.9058 42 1 6.0755 4.3330 -0.9885 43 1 5.3551 0.0042 -0.0089 44 1 4.1314 -2.1311 0.0009 45 1 3.1520 -3.3907 -0.7585 46 1 3.3871 -4.9077 1.1887 47 1 3.4123 -3.2032 1.7003 48 1 1.9419 -4.1794 1.9304 49 1 1.0784 -4.3860 -1.6848 50 1 2.0236 -5.5987 -0.7876 51 1 0.5789 -4.8701 -0.0464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237710563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:22 Heat of formation + Delta-G solvation = -47.940007 kcal Electronic energy + Delta-G solvation = -26994.749171 eV Core-core repulsion = 23471.583711 eV Total energy + Delta-G solvation = -3523.165460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41791 -40.06247 -38.64172 -35.71372 -34.51967 -33.77718 -33.23580 -31.95610 -31.21849 -28.19376 -27.88765 -26.87167 -26.80833 -24.28965 -23.61985 -22.79507 -21.77492 -21.17028 -20.40276 -19.05272 -18.94722 -17.17119 -17.01996 -16.45255 -16.27204 -16.06839 -15.65412 -15.55807 -15.12577 -14.90364 -14.88014 -14.54552 -14.49572 -14.09004 -14.05549 -13.86900 -13.65038 -13.41837 -13.27361 -13.11638 -12.96611 -12.94657 -12.75921 -12.70096 -12.48680 -12.31665 -12.15715 -11.98960 -11.79568 -11.72645 -11.59648 -11.44534 -11.28504 -11.09222 -10.81994 -10.58843 -9.68976 -9.20892 -8.87482 -8.28368 -6.30889 0.42050 0.47252 1.35576 1.37905 1.51162 2.29248 2.37128 2.68848 3.06947 3.30248 3.80245 3.83729 3.90446 3.93719 4.02230 4.13372 4.17045 4.19560 4.30103 4.34485 4.41114 4.42307 4.51340 4.64455 4.68500 4.70538 4.74209 4.78317 4.83627 4.84799 4.85245 4.88542 4.89110 4.94874 5.00460 5.04340 5.10227 5.21602 5.22619 5.26304 5.27359 5.32716 5.42339 5.51205 5.57479 5.67428 5.75145 5.76858 5.90920 6.18464 6.29839 6.40577 6.54816 6.77146 7.35279 8.88650 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.002764 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.967122 B =10128.586052 C =10280.138641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.133 4.133 3 C -0.072 4.072 4 C -0.112 4.112 5 C 0.098 3.902 6 N -0.543 5.543 7 C 0.062 3.938 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.020 3.980 11 H 0.031 0.969 12 C -0.512 4.512 13 H 0.030 0.970 14 C 0.013 3.987 15 N -0.951 5.951 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.241 1.241 20 C 0.085 3.915 21 C -0.083 4.083 22 C -0.205 4.205 23 C 0.119 3.881 24 O -0.321 6.321 25 C 0.067 3.933 26 C -0.176 4.176 27 C -0.146 4.146 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.029 0.971 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.265 0.735 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.132 0.868 44 H 0.146 0.854 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.097 0.903 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 -28.430 9.045 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C -0.090 4.090 4 C -0.113 4.113 5 C -0.029 4.029 6 N -0.267 5.267 7 C -0.065 4.065 8 C -0.151 4.151 9 C -0.150 4.150 10 C 0.001 3.999 11 H 0.050 0.950 12 C -0.551 4.551 13 H 0.048 0.952 14 C -0.184 4.184 15 N -0.591 5.591 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.165 1.165 20 C -0.043 4.043 21 C -0.101 4.101 22 C -0.224 4.224 23 C 0.073 3.927 24 O -0.235 6.235 25 C 0.011 3.989 26 C -0.233 4.233 27 C -0.203 4.203 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.115 0.885 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.572 -28.319 8.737 30.850 hybrid contribution 0.842 0.811 -0.198 1.185 sum -7.730 -27.508 8.538 29.822 Atomic orbital electron populations 1.20572 0.89722 1.02783 1.02515 1.19471 0.97332 0.90386 1.06198 1.20869 0.93539 0.97184 0.97441 1.19646 0.93816 0.94399 1.03404 1.20962 0.98448 0.94366 0.89096 1.61991 1.47572 1.02100 1.15053 1.22095 0.93842 0.96471 0.94124 1.21624 1.01046 0.96255 0.96197 1.21769 0.98944 0.94825 0.99427 1.19086 0.95265 0.92603 0.92949 0.95047 1.21245 1.23032 0.96395 1.14421 0.95154 1.25892 0.98000 0.94473 1.00026 1.70063 1.47571 1.05011 1.36459 0.85835 0.79151 0.80121 0.78440 1.19847 1.21461 1.16459 1.21920 0.96486 0.87977 0.97904 1.20975 1.00172 0.91193 0.97801 1.21365 0.92823 0.99625 1.08572 1.18899 0.90772 0.85801 0.97191 1.86090 1.36985 1.12584 1.87869 1.22695 0.94983 0.83153 0.98062 1.22356 1.02095 1.02741 0.96114 1.21872 1.00554 0.96788 1.01060 0.90921 0.91225 0.91541 0.85267 0.90183 0.93847 0.95245 0.89543 0.92554 0.90217 0.94182 0.93763 0.92627 0.92289 0.96611 0.84970 0.83639 0.90572 0.89058 0.92641 0.91823 0.92235 0.88463 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.79 71.24 0.70 -1.27 16 2 C -0.13 -3.16 5.89 -19.77 -0.12 -3.27 16 3 C -0.07 -1.80 9.35 22.26 0.21 -1.60 16 4 C -0.11 -2.84 4.89 -19.85 -0.10 -2.93 16 5 C 0.10 2.75 5.12 85.55 0.44 3.18 16 6 N -0.54 -18.32 4.65 -900.92 -4.19 -22.50 16 7 C 0.06 1.89 5.15 86.33 0.44 2.34 16 8 C -0.11 -3.75 6.09 30.65 0.19 -3.57 16 9 C -0.11 -4.64 5.07 30.67 0.16 -4.48 16 10 C 0.02 0.95 1.80 -11.49 -0.02 0.93 16 11 H 0.03 1.52 5.61 -2.39 -0.01 1.51 16 12 C -0.51 -29.43 8.86 25.60 0.23 -29.20 16 13 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 14 C 0.01 0.76 5.47 84.65 0.46 1.22 16 15 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 16 Si 0.94 45.32 26.59 68.60 1.82 47.14 16 17 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.24 -10.84 6.05 99.48 0.60 -10.23 16 20 C 0.08 3.47 4.73 86.33 0.41 3.88 16 21 C -0.08 -1.83 7.87 22.25 0.18 -1.66 16 22 C -0.21 -4.18 8.26 22.37 0.18 -4.00 16 23 C 0.12 2.68 6.57 22.51 0.15 2.82 16 24 O -0.32 -6.53 8.84 -92.33 -0.82 -7.35 16 25 C 0.07 0.92 2.84 30.59 0.09 1.01 16 26 C -0.18 -1.98 9.18 71.98 0.66 -1.32 16 27 C -0.15 -1.49 9.56 71.98 0.69 -0.81 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 30 H 0.07 1.31 7.53 -2.39 -0.02 1.29 16 31 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 33 H 0.04 1.15 8.07 -2.39 -0.02 1.13 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 2.32 5.75 -2.39 -0.01 2.30 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.04 1.73 7.08 -2.39 -0.02 1.71 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.06 2.47 8.02 -2.39 -0.02 2.46 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.13 2.53 7.95 -2.91 -0.02 2.51 16 44 H 0.15 2.27 5.45 -2.92 -0.02 2.26 16 45 H 0.08 0.99 6.29 -2.39 -0.02 0.98 16 46 H 0.09 0.63 8.14 -2.38 -0.02 0.62 16 47 H 0.05 0.73 6.95 -2.39 -0.02 0.71 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 50 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -67.23 389.49 2.83 -64.40 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.78 Total: 16.79 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 4.94 Total: -38.72 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -3.89 Total: -82.28 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.82 Total: -7.35 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.82 Total: 47.14 kcal Total: -67.23 2.83 -64.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237710563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.459 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds