Wall clock time and date at job start Tue Mar 31 2020 11:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.02732 * 2 1 4 4 C 1.38242 * 120.05443 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.94288 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47214 * 269.97569 * 5 4 3 7 7 C 1.46840 * 111.00093 * 294.20896 * 6 5 4 8 8 C 1.53035 * 109.52429 * 174.15899 * 7 6 5 9 9 C 1.53120 * 109.27763 * 59.18214 * 8 7 6 10 10 C 1.50705 * 109.57595 * 182.41206 * 9 8 7 11 11 H 1.07994 * 119.99884 * 119.71338 * 10 9 8 12 12 C 1.37882 * 119.99483 * 299.71199 * 10 9 8 13 13 N 1.31514 * 120.00255 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99558 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47263 * 90.00168 * 14 12 10 16 16 H 1.48506 * 109.46949 * 210.00055 * 14 12 10 17 17 H 1.48502 * 109.47352 * 329.99926 * 14 12 10 18 18 C 1.53121 * 109.15759 * 302.34224 * 9 8 7 19 19 C 1.46846 * 111.00009 * 169.99873 * 6 5 4 20 20 C 1.38285 * 120.11250 * 0.02562 * 4 3 2 21 21 C 1.38125 * 120.05653 * 359.97438 * 20 4 3 22 22 C 1.38708 * 120.02748 * 179.97438 * 2 1 3 23 23 O 1.35898 * 120.05769 * 359.97438 * 22 2 1 24 24 C 1.42904 * 117.00327 * 185.51202 * 23 22 2 25 25 C 1.52999 * 109.47094 * 154.97219 * 24 23 22 26 26 C 1.52999 * 109.47171 * 274.97507 * 24 23 22 27 27 H 1.09008 * 109.46541 * 270.01971 * 1 2 3 28 28 H 1.08992 * 109.47392 * 30.01930 * 1 2 3 29 29 H 1.09000 * 109.47104 * 150.02229 * 1 2 3 30 30 H 1.07995 * 119.97227 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47163 * 29.97863 * 5 4 3 32 32 H 1.08997 * 109.47257 * 149.97798 * 5 4 3 33 33 H 1.09003 * 109.46644 * 294.17612 * 7 6 5 34 34 H 1.09000 * 109.46069 * 54.14764 * 7 6 5 35 35 H 1.09002 * 109.50370 * 299.24376 * 8 7 6 36 36 H 1.09001 * 109.54016 * 179.14453 * 8 7 6 37 37 H 1.08992 * 109.52192 * 62.24843 * 9 8 7 38 38 H 0.96996 * 119.99698 * 179.97438 * 13 12 10 39 39 H 1.08991 * 109.50523 * 297.71570 * 18 9 8 40 40 H 1.08999 * 109.53235 * 177.61287 * 18 9 8 41 41 H 1.09006 * 109.46517 * 305.86134 * 19 6 5 42 42 H 1.09009 * 109.46250 * 65.83301 * 19 6 5 43 43 H 1.08005 * 119.97092 * 180.27953 * 20 4 3 44 44 H 1.08006 * 120.02527 * 179.97438 * 21 20 4 45 45 H 1.09002 * 109.46897 * 34.97386 * 24 23 22 46 46 H 1.08995 * 109.47206 * 60.00681 * 25 24 23 47 47 H 1.09002 * 109.46685 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47313 * 300.00031 * 25 24 23 49 49 H 1.09002 * 109.47350 * 179.97438 * 26 24 23 50 50 H 1.09002 * 109.47111 * 299.99748 * 26 24 23 51 51 H 1.09010 * 109.47216 * 60.00041 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.3324 2.5031 0.0011 6 7 4.5777 2.9275 -1.3837 7 6 5.4851 1.9967 -2.0666 8 6 5.6023 2.3863 -3.5418 9 6 6.1364 3.8176 -3.6458 10 6 6.1986 4.2294 -5.0941 11 1 5.6272 5.0784 -5.4391 12 6 6.9851 3.5222 -5.9787 13 7 7.6805 2.4880 -5.5586 14 14 7.0627 4.0331 -7.7738 15 1 8.1637 5.0113 -7.9628 16 1 7.3125 2.8374 -8.6184 17 1 5.7736 4.6565 -8.1673 18 6 5.1991 4.7601 -2.8857 19 6 5.0937 4.3016 -1.4294 20 6 4.2752 0.0010 0.0005 21 6 3.5886 -1.1976 0.0005 22 6 2.2011 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 6 2.2984 -3.5732 0.1244 25 6 1.4316 -4.6846 0.7196 26 6 2.7986 -4.0008 -1.2568 27 1 -0.3633 0.0004 1.0278 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1315 0.0004 31 1 3.7419 3.2618 0.5146 32 1 5.2846 2.3741 0.5156 33 1 6.4692 2.0407 -1.6000 34 1 5.0915 0.9832 -1.9889 35 1 4.6207 2.3292 -4.0124 36 1 6.2876 1.7047 -4.0456 37 1 7.1342 3.8665 -3.2099 38 1 8.2334 1.9903 -6.1810 39 1 4.2114 4.7402 -3.3459 40 1 5.5962 5.7746 -2.9199 41 1 4.4159 4.9623 -0.8888 42 1 6.0797 4.3349 -0.9659 43 1 5.3552 0.0041 0.0055 44 1 4.1315 -2.1313 0.0001 45 1 3.1506 -3.3877 0.7781 46 1 0.5794 -4.8702 0.0659 47 1 2.0229 -5.5955 0.8136 48 1 1.0752 -4.3800 1.7036 49 1 3.3901 -4.9116 -1.1631 50 1 1.9463 -4.1864 -1.9105 51 1 3.4162 -3.2089 -1.6808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237710814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:38 Heat of formation + Delta-G solvation = -31.652634 kcal Electronic energy + Delta-G solvation = -27046.878143 eV Core-core repulsion = 23524.418956 eV Total energy + Delta-G solvation = -3522.459187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45500 -38.65789 -37.40152 -34.31942 -33.34884 -32.39239 -31.62252 -29.84756 -29.73105 -27.56101 -26.89672 -26.19542 -24.31470 -23.19158 -21.96910 -21.40903 -20.90525 -20.12654 -18.53522 -18.13529 -16.34692 -16.19541 -15.61871 -15.22210 -15.20996 -14.67025 -14.46386 -14.37427 -13.84536 -13.70636 -13.33369 -13.20400 -12.94061 -12.83446 -12.69534 -12.57023 -12.45153 -12.35107 -12.25861 -12.15459 -11.74850 -11.48409 -11.42257 -11.24558 -11.03582 -10.91438 -10.73449 -10.68786 -10.55717 -10.37222 -10.15676 -9.92022 -9.37794 -8.91649 -8.73916 -8.59350 -8.24814 -7.96695 -7.63793 -5.93220 -3.98164 1.43971 1.51619 3.11239 3.33714 3.40344 3.44245 3.76827 4.48487 4.51878 4.64986 4.66636 4.77579 4.85884 4.88438 5.04993 5.21203 5.26477 5.36932 5.39240 5.40789 5.45816 5.50851 5.56666 5.66349 5.69142 5.73445 5.79584 5.82069 5.82912 5.95202 5.96171 5.98593 6.15661 6.25025 6.29389 6.36541 6.43585 6.49934 6.68229 6.69069 6.79878 6.89272 6.90953 7.13251 7.22806 7.45150 7.50204 7.67637 7.75615 7.88706 8.10502 8.21279 8.53264 9.05496 9.65868 11.12947 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.003017 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.517121 B = 9277.352810 C =10302.524747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.122 4.122 3 C -0.062 4.062 4 C -0.099 4.099 5 C 0.095 3.905 6 N -0.530 5.530 7 C 0.055 3.945 8 C -0.103 4.103 9 C 0.048 3.952 10 C -0.509 4.509 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.106 4.106 19 C 0.061 3.939 20 C -0.076 4.076 21 C -0.206 4.206 22 C 0.124 3.876 23 O -0.310 6.310 24 C 0.077 3.923 25 C -0.147 4.147 26 C -0.182 4.182 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 -11.007 15.373 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.081 4.081 4 C -0.100 4.100 5 C -0.033 4.033 6 N -0.255 5.255 7 C -0.072 4.072 8 C -0.141 4.141 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.144 4.144 19 C -0.067 4.067 20 C -0.095 4.095 21 C -0.225 4.225 22 C 0.079 3.921 23 O -0.225 6.225 24 C 0.021 3.979 25 C -0.204 4.204 26 C -0.239 4.239 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.510 -11.182 15.032 21.988 hybrid contribution 1.276 0.093 -0.664 1.442 sum -10.234 -11.089 14.368 20.836 Atomic orbital electron populations 1.20560 0.90808 1.02637 1.01776 1.19204 0.96275 0.90308 1.06448 1.20716 0.93341 0.96652 0.97362 1.19665 0.93655 0.94615 1.02019 1.20965 0.97678 0.93562 0.91096 1.62030 1.48103 1.02696 1.12641 1.22337 0.92165 0.95005 0.97674 1.21639 1.00675 1.01077 0.90706 1.18683 0.93203 0.90729 0.94455 1.21218 1.26450 1.13378 0.93671 0.92783 1.24969 0.95502 0.95068 0.98511 1.69880 1.29400 1.19197 1.34681 0.86644 0.78310 0.77972 0.85360 1.20839 1.21322 1.19956 1.21674 1.01074 0.98984 0.92656 1.22125 0.96652 0.88763 0.99147 1.20851 0.99643 0.91439 0.97573 1.21167 0.92970 0.99087 1.09281 1.18728 0.90321 0.85383 0.97650 1.86077 1.36077 1.12195 1.88107 1.22394 0.94506 0.83777 0.97250 1.21841 1.00480 0.96664 1.01453 1.22397 1.02252 1.02299 0.96969 0.91858 0.91727 0.91446 0.85466 0.90680 0.94792 0.96256 0.92201 0.93936 0.89102 0.96255 0.93176 0.92489 0.93225 0.92456 0.95880 0.86132 0.85634 0.91026 0.91514 0.90672 0.91791 0.91166 0.91450 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.79 36.01 0.35 -0.76 16 2 C -0.12 -1.62 5.89 -104.47 -0.62 -2.24 16 3 C -0.06 -0.85 9.35 -39.61 -0.37 -1.22 16 4 C -0.10 -1.43 4.89 -104.60 -0.51 -1.94 16 5 C 0.09 1.41 5.12 -4.97 -0.03 1.38 16 6 N -0.53 -9.64 4.65 -236.11 -1.10 -10.74 16 7 C 0.06 1.12 5.16 -3.84 -0.02 1.10 16 8 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 9 C 0.05 1.21 2.16 -91.64 -0.20 1.01 16 10 C -0.51 -14.20 8.57 -34.44 -0.29 -14.50 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -25.73 11.37 55.43 0.63 -25.10 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 19 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 20 C -0.08 -1.07 7.86 -39.61 -0.31 -1.38 16 21 C -0.21 -2.69 8.25 -39.43 -0.33 -3.01 16 22 C 0.12 1.66 6.57 -39.22 -0.26 1.40 16 23 O -0.31 -3.78 8.85 -19.42 -0.17 -3.95 16 24 C 0.08 0.71 2.84 -26.73 -0.08 0.64 16 25 C -0.15 -1.04 9.56 37.16 0.36 -0.68 16 26 C -0.18 -1.63 9.17 37.16 0.34 -1.29 16 27 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 32 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 1.16 5.75 -51.93 -0.30 0.86 16 35 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 42 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.12 1.60 7.96 -52.48 -0.42 1.19 16 44 H 0.13 1.39 5.43 -52.48 -0.29 1.11 16 45 H 0.07 0.63 6.31 -51.93 -0.33 0.30 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.70 6.92 -51.92 -0.36 0.35 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -29.74 392.10 -11.21 -40.94 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -9.10 Total: 0.21 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -2.35 Total: -23.85 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.47 Total: -35.84 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.17 Total: -3.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.74 -11.21 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237710814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.291 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds