Wall clock time and date at job start Tue Mar 31 2020 11:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.02732 * 2 1 4 4 C 1.38242 * 120.05443 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.94288 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47214 * 269.97569 * 5 4 3 7 7 C 1.46840 * 111.00093 * 294.20896 * 6 5 4 8 8 C 1.53035 * 109.52429 * 174.15899 * 7 6 5 9 9 C 1.53120 * 109.27763 * 59.18214 * 8 7 6 10 10 C 1.50705 * 109.57595 * 182.41206 * 9 8 7 11 11 H 1.07994 * 119.99884 * 119.71338 * 10 9 8 12 12 C 1.37882 * 119.99483 * 299.71199 * 10 9 8 13 13 N 1.31514 * 120.00255 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99558 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47263 * 90.00168 * 14 12 10 16 16 H 1.48506 * 109.46949 * 210.00055 * 14 12 10 17 17 H 1.48502 * 109.47352 * 329.99926 * 14 12 10 18 18 C 1.53121 * 109.15759 * 302.34224 * 9 8 7 19 19 C 1.46846 * 111.00009 * 169.99873 * 6 5 4 20 20 C 1.38285 * 120.11250 * 0.02562 * 4 3 2 21 21 C 1.38125 * 120.05653 * 359.97438 * 20 4 3 22 22 C 1.38708 * 120.02748 * 179.97438 * 2 1 3 23 23 O 1.35898 * 120.05769 * 359.97438 * 22 2 1 24 24 C 1.42904 * 117.00327 * 185.51202 * 23 22 2 25 25 C 1.52999 * 109.47094 * 154.97219 * 24 23 22 26 26 C 1.52999 * 109.47171 * 274.97507 * 24 23 22 27 27 H 1.09008 * 109.46541 * 270.01971 * 1 2 3 28 28 H 1.08992 * 109.47392 * 30.01930 * 1 2 3 29 29 H 1.09000 * 109.47104 * 150.02229 * 1 2 3 30 30 H 1.07995 * 119.97227 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47163 * 29.97863 * 5 4 3 32 32 H 1.08997 * 109.47257 * 149.97798 * 5 4 3 33 33 H 1.09003 * 109.46644 * 294.17612 * 7 6 5 34 34 H 1.09000 * 109.46069 * 54.14764 * 7 6 5 35 35 H 1.09002 * 109.50370 * 299.24376 * 8 7 6 36 36 H 1.09001 * 109.54016 * 179.14453 * 8 7 6 37 37 H 1.08992 * 109.52192 * 62.24843 * 9 8 7 38 38 H 0.96996 * 119.99698 * 179.97438 * 13 12 10 39 39 H 1.08991 * 109.50523 * 297.71570 * 18 9 8 40 40 H 1.08999 * 109.53235 * 177.61287 * 18 9 8 41 41 H 1.09006 * 109.46517 * 305.86134 * 19 6 5 42 42 H 1.09009 * 109.46250 * 65.83301 * 19 6 5 43 43 H 1.08005 * 119.97092 * 180.27953 * 20 4 3 44 44 H 1.08006 * 120.02527 * 179.97438 * 21 20 4 45 45 H 1.09002 * 109.46897 * 34.97386 * 24 23 22 46 46 H 1.08995 * 109.47206 * 60.00681 * 25 24 23 47 47 H 1.09002 * 109.46685 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47313 * 300.00031 * 25 24 23 49 49 H 1.09002 * 109.47350 * 179.97438 * 26 24 23 50 50 H 1.09002 * 109.47111 * 299.99748 * 26 24 23 51 51 H 1.09010 * 109.47216 * 60.00041 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.3324 2.5031 0.0011 6 7 4.5777 2.9275 -1.3837 7 6 5.4851 1.9967 -2.0666 8 6 5.6023 2.3863 -3.5418 9 6 6.1364 3.8176 -3.6458 10 6 6.1986 4.2294 -5.0941 11 1 5.6272 5.0784 -5.4391 12 6 6.9851 3.5222 -5.9787 13 7 7.6805 2.4880 -5.5586 14 14 7.0627 4.0331 -7.7738 15 1 8.1637 5.0113 -7.9628 16 1 7.3125 2.8374 -8.6184 17 1 5.7736 4.6565 -8.1673 18 6 5.1991 4.7601 -2.8857 19 6 5.0937 4.3016 -1.4294 20 6 4.2752 0.0010 0.0005 21 6 3.5886 -1.1976 0.0005 22 6 2.2011 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 6 2.2984 -3.5732 0.1244 25 6 1.4316 -4.6846 0.7196 26 6 2.7986 -4.0008 -1.2568 27 1 -0.3633 0.0004 1.0278 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1315 0.0004 31 1 3.7419 3.2618 0.5146 32 1 5.2846 2.3741 0.5156 33 1 6.4692 2.0407 -1.6000 34 1 5.0915 0.9832 -1.9889 35 1 4.6207 2.3292 -4.0124 36 1 6.2876 1.7047 -4.0456 37 1 7.1342 3.8665 -3.2099 38 1 8.2334 1.9903 -6.1810 39 1 4.2114 4.7402 -3.3459 40 1 5.5962 5.7746 -2.9199 41 1 4.4159 4.9623 -0.8888 42 1 6.0797 4.3349 -0.9659 43 1 5.3552 0.0041 0.0055 44 1 4.1315 -2.1313 0.0001 45 1 3.1506 -3.3877 0.7781 46 1 0.5794 -4.8702 0.0659 47 1 2.0229 -5.5955 0.8136 48 1 1.0752 -4.3800 1.7036 49 1 3.3901 -4.9116 -1.1631 50 1 1.9463 -4.1864 -1.9105 51 1 3.4162 -3.2089 -1.6808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237710814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:37 Heat of formation + Delta-G solvation = -46.348690 kcal Electronic energy + Delta-G solvation = -27047.515412 eV Core-core repulsion = 23524.418956 eV Total energy + Delta-G solvation = -3523.096456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41574 -39.99291 -38.60965 -35.89245 -34.50160 -33.41533 -33.15761 -31.44453 -31.18018 -28.27918 -28.09610 -27.55138 -25.85423 -24.27027 -23.60793 -22.99312 -21.78611 -21.20013 -20.32694 -19.04713 -18.43725 -17.16156 -16.92217 -16.45718 -16.34816 -16.23066 -15.72464 -15.53528 -14.96458 -14.80900 -14.73721 -14.54301 -14.26624 -14.09230 -14.01025 -13.80449 -13.45134 -13.35756 -13.15590 -13.10980 -12.97091 -12.87265 -12.78212 -12.56231 -12.47742 -12.42693 -12.07464 -12.01013 -11.92121 -11.82279 -11.60410 -11.46515 -11.33119 -10.79282 -10.63629 -10.37674 -9.68620 -9.20533 -8.87547 -8.07598 -6.20791 0.41827 0.47429 1.40158 1.41086 1.51414 2.28419 2.43707 2.68901 3.18939 3.30310 3.79776 3.83904 3.88898 3.94121 4.00764 4.16971 4.23902 4.27789 4.31730 4.39630 4.41566 4.49737 4.57108 4.67473 4.68600 4.74149 4.76196 4.80636 4.82030 4.87341 4.87950 4.92304 4.94029 4.99767 5.03538 5.11408 5.20770 5.25038 5.25338 5.32497 5.34939 5.42620 5.52306 5.57938 5.63135 5.74070 5.91267 6.01016 6.04336 6.31069 6.36577 6.41597 6.53105 6.90933 7.46707 8.96918 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.003017 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.517121 B = 9277.352810 C =10302.524747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.134 4.134 3 C -0.068 4.068 4 C -0.114 4.114 5 C 0.099 3.901 6 N -0.537 5.537 7 C 0.072 3.928 8 C -0.093 4.093 9 C 0.044 3.956 10 C -0.532 4.532 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.269 1.269 18 C -0.100 4.100 19 C 0.066 3.934 20 C -0.089 4.089 21 C -0.210 4.210 22 C 0.117 3.883 23 O -0.319 6.319 24 C 0.068 3.932 25 C -0.143 4.143 26 C -0.180 4.180 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.013 0.987 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.058 0.942 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.022 0.978 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 -11.207 16.357 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C -0.086 4.086 4 C -0.115 4.115 5 C -0.028 4.028 6 N -0.262 5.262 7 C -0.056 4.056 8 C -0.131 4.131 9 C 0.026 3.974 10 C -0.571 4.571 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.778 3.222 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.138 4.138 19 C -0.061 4.061 20 C -0.108 4.108 21 C -0.229 4.229 22 C 0.072 3.928 23 O -0.234 6.234 24 C 0.013 3.987 25 C -0.200 4.200 26 C -0.237 4.237 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.041 0.959 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.083 0.917 49 H 0.110 0.890 50 H 0.082 0.918 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.732 -11.379 16.031 23.422 hybrid contribution 1.640 0.084 -0.958 1.901 sum -11.093 -11.296 15.073 21.859 Atomic orbital electron populations 1.20569 0.89313 1.02814 1.02701 1.19541 0.97567 0.90298 1.06059 1.20902 0.93170 0.97409 0.97116 1.19715 0.94118 0.94484 1.03171 1.21017 0.98381 0.94496 0.88922 1.61964 1.46983 1.02217 1.14988 1.22021 0.92565 0.95968 0.95070 1.21393 0.98484 0.99912 0.93340 1.18658 0.92613 0.92360 0.93787 1.21599 1.26648 1.13475 0.95333 0.93099 1.25754 0.95195 0.95073 1.02720 1.70021 1.29795 1.19955 1.35983 0.85641 0.78522 0.77732 0.80276 1.20084 1.20924 1.19389 1.21543 0.99391 0.98370 0.94453 1.22075 0.97717 0.89357 0.96987 1.20977 0.99869 0.91861 0.98061 1.21342 0.93167 0.99464 1.08880 1.18918 0.90540 0.86060 0.97299 1.86078 1.36828 1.12577 1.87913 1.22676 0.95100 0.83353 0.97591 1.21854 1.00399 0.96560 1.01165 1.22388 1.02048 1.02585 0.96672 0.90499 0.90870 0.91900 0.84163 0.88342 0.94298 0.96905 0.91427 0.95657 0.92340 0.99398 0.93158 0.93161 0.92650 0.88945 0.95933 0.86033 0.84245 0.90529 0.91665 0.88508 0.91692 0.88999 0.91846 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.79 71.24 0.70 -1.28 16 2 C -0.13 -3.40 5.89 -19.77 -0.12 -3.52 16 3 C -0.07 -1.74 9.35 22.25 0.21 -1.53 16 4 C -0.11 -3.16 4.89 -19.85 -0.10 -3.25 16 5 C 0.10 2.73 5.12 85.56 0.44 3.17 16 6 N -0.54 -18.84 4.65 -900.92 -4.19 -23.03 16 7 C 0.07 2.91 5.16 86.33 0.45 3.36 16 8 C -0.09 -4.65 5.12 30.65 0.16 -4.50 16 9 C 0.04 2.31 2.16 -11.46 -0.02 2.28 16 10 C -0.53 -30.36 8.57 25.60 0.22 -30.14 16 11 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 12 C 0.01 0.62 5.31 84.66 0.45 1.06 16 13 N -0.92 -54.34 11.37 21.45 0.24 -54.10 16 14 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 C -0.10 -4.23 5.32 30.65 0.16 -4.07 16 19 C 0.07 2.29 5.46 86.33 0.47 2.76 16 20 C -0.09 -2.43 7.86 22.25 0.17 -2.26 16 21 C -0.21 -5.33 8.25 22.37 0.18 -5.14 16 22 C 0.12 3.03 6.57 22.50 0.15 3.18 16 23 O -0.32 -7.47 8.85 -92.41 -0.82 -8.28 16 24 C 0.07 1.18 2.84 30.59 0.09 1.26 16 25 C -0.14 -1.74 9.56 71.98 0.69 -1.05 16 26 C -0.18 -3.04 9.17 71.98 0.66 -2.38 16 27 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.06 1.32 7.53 -2.39 -0.02 1.31 16 30 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.10 2.28 7.93 -2.39 -0.02 2.26 16 32 H 0.04 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 2.63 5.75 -2.39 -0.01 2.62 16 35 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 3.29 6.17 -2.39 -0.01 3.27 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.09 2.60 8.02 -2.38 -0.02 2.59 16 42 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.12 3.20 7.96 -2.91 -0.02 3.17 16 44 H 0.14 3.00 5.43 -2.91 -0.02 2.98 16 45 H 0.08 1.24 6.31 -2.39 -0.02 1.22 16 46 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 0.99 6.92 -2.38 -0.02 0.97 16 Total: -1.00 -64.99 392.10 3.10 -61.90 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.88 Total: 18.76 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 4.95 Total: -42.04 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -3.94 Total: -77.12 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.82 Total: -8.28 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.99 3.10 -61.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237710814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.549 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds