Wall clock time and date at job start Tue Mar 31 2020 11:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38287 * 119.94177 * 2 1 4 4 C 1.38122 * 120.05213 * 180.02562 * 3 2 1 5 5 C 1.38753 * 119.94519 * 359.97438 * 4 3 2 6 6 O 1.35898 * 120.05886 * 179.72662 * 5 4 3 7 7 C 1.42897 * 117.00490 * 185.46795 * 6 5 4 8 8 C 1.52997 * 109.47481 * 155.16349 * 7 6 5 9 9 C 1.53009 * 109.47107 * 275.16335 * 7 6 5 10 10 C 1.38712 * 119.88929 * 359.97438 * 5 4 3 11 11 C 1.38175 * 119.94232 * 0.02562 * 10 5 4 12 12 C 1.50700 * 119.97211 * 179.97438 * 11 10 5 13 13 N 1.46905 * 109.46635 * 260.00241 * 12 11 10 14 14 C 1.46849 * 111.00358 * 45.79275 * 13 12 11 15 15 C 1.53031 * 109.52223 * 185.83793 * 14 13 12 16 16 C 1.53119 * 109.28110 * 300.81555 * 15 14 13 17 17 C 1.53130 * 109.15607 * 57.65692 * 16 15 14 18 18 H 1.08992 * 109.53727 * 62.30852 * 17 16 15 19 19 C 1.50697 * 109.49853 * 182.40375 * 17 16 15 20 20 H 1.08003 * 119.99778 * 119.80336 * 19 17 16 21 21 C 1.37872 * 120.00458 * 299.80245 * 19 17 16 22 22 N 1.31510 * 120.00269 * 180.02562 * 21 19 17 23 23 Si 1.86799 * 119.99687 * 0.02562 * 21 19 17 24 24 H 1.48499 * 109.47290 * 90.00425 * 23 21 19 25 25 H 1.48506 * 109.47128 * 209.99718 * 23 21 19 26 26 H 1.48496 * 109.47328 * 330.00003 * 23 21 19 27 27 C 1.46851 * 110.99616 * 169.99855 * 13 12 11 28 28 H 1.08998 * 109.47354 * 90.00241 * 1 2 3 29 29 H 1.09003 * 109.47213 * 210.00838 * 1 2 3 30 30 H 1.09001 * 109.47133 * 330.00594 * 1 2 3 31 31 H 1.08000 * 119.97745 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.03069 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47398 * 35.16130 * 7 6 5 34 34 H 1.08999 * 109.47270 * 59.99953 * 8 7 6 35 35 H 1.09007 * 109.46722 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47045 * 299.99791 * 8 7 6 37 37 H 1.08996 * 109.47086 * 179.97438 * 9 7 6 38 38 H 1.09002 * 109.46824 * 300.00146 * 9 7 6 39 39 H 1.08999 * 109.46658 * 59.99767 * 9 7 6 40 40 H 1.08002 * 120.03281 * 179.97438 * 10 5 4 41 41 H 1.09004 * 109.47080 * 19.99542 * 12 11 10 42 42 H 1.08994 * 109.47189 * 140.00444 * 12 11 10 43 43 H 1.08999 * 109.45751 * 305.85416 * 14 13 12 44 44 H 1.08992 * 109.46273 * 65.81898 * 14 13 12 45 45 H 1.09008 * 109.50305 * 180.87560 * 15 14 13 46 46 H 1.09003 * 109.50634 * 60.76101 * 15 14 13 47 47 H 1.08994 * 109.52205 * 297.75424 * 16 15 14 48 48 H 1.08994 * 109.52381 * 177.56104 * 16 15 14 49 49 H 0.97000 * 120.00436 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.46578 * 294.17477 * 27 13 12 51 51 H 1.09004 * 109.45960 * 54.14428 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6324 -0.0001 -0.0067 7 6 6.2806 -1.2678 -0.1276 8 6 7.6759 -1.0724 -0.7242 9 6 6.4027 -1.9122 1.2548 10 6 3.5787 -1.2006 0.0005 11 6 2.1970 -1.1979 0.0011 12 6 1.4415 -2.5019 0.0017 13 7 0.9875 -2.8053 -1.3621 14 6 2.0660 -2.5917 -2.3356 15 6 1.5193 -2.7755 -3.7531 16 6 0.9502 -4.1898 -3.8960 17 6 -0.1374 -4.4030 -2.8394 18 1 -0.9524 -3.6994 -3.0081 19 6 -0.6618 -5.8126 -2.9347 20 1 -0.5794 -6.4778 -2.0878 21 6 -1.2468 -6.2530 -4.1028 22 7 -1.7049 -7.4830 -4.1858 23 14 -1.3887 -5.1027 -5.5678 24 1 -0.1779 -5.2318 -6.4177 25 1 -2.5915 -5.4593 -6.3625 26 1 -1.5097 -3.7026 -5.0879 27 6 0.4574 -4.1720 -1.4484 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3633 0.8900 0.5137 31 1 1.6560 2.1328 0.0004 32 1 4.1172 2.1370 -0.0010 33 1 5.6941 -1.9151 -0.7796 34 1 8.2625 -0.4252 -0.0722 35 1 8.1704 -2.0395 -0.8160 36 1 7.5889 -0.6135 -1.7090 37 1 6.8968 -2.8793 1.1625 38 1 6.9893 -1.2648 1.9068 39 1 5.4087 -2.0513 1.6798 40 1 4.1173 -2.1368 0.0001 41 1 2.0952 -3.3003 0.3530 42 1 0.5785 -2.4215 0.6624 43 1 2.4590 -1.5809 -2.2262 44 1 2.8638 -3.3126 -2.1578 45 1 2.3235 -2.6321 -4.4748 46 1 0.7307 -2.0456 -3.9365 47 1 1.7469 -4.9193 -3.7511 48 1 0.5207 -4.3108 -4.8904 49 1 -2.1169 -7.7928 -5.0075 50 1 1.2628 -4.8856 -1.2747 51 1 -0.3179 -4.3091 -0.6946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238485108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:32 Heat of formation + Delta-G solvation = -21.295999 kcal Electronic energy + Delta-G solvation = -27718.400178 eV Core-core repulsion = 24196.390089 eV Total energy + Delta-G solvation = -3522.010089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.59739 -38.91083 -37.67321 -34.36975 -33.42419 -32.25277 -31.64728 -30.84446 -30.16737 -27.68350 -26.65016 -25.87293 -24.89465 -23.12678 -22.41666 -21.52484 -20.98544 -20.22544 -18.84152 -17.90686 -16.70762 -16.29695 -15.80725 -15.48684 -15.41919 -14.86392 -14.50482 -14.23198 -14.03105 -13.86713 -13.55852 -13.36422 -13.14704 -13.08496 -12.89394 -12.76064 -12.60278 -12.48413 -12.17865 -12.04224 -11.96054 -11.78926 -11.65970 -11.27263 -11.20165 -11.05983 -11.02215 -10.73136 -10.61296 -10.41800 -10.05748 -9.94234 -9.67596 -9.09781 -8.92656 -8.84866 -8.50489 -8.02772 -7.76960 -6.06175 -4.05247 1.28256 1.42978 3.04493 3.29547 3.40790 3.44352 3.67638 4.43566 4.45313 4.50114 4.59959 4.72409 4.74557 4.84557 5.00357 5.14369 5.22980 5.23661 5.25783 5.33211 5.40829 5.46378 5.48013 5.52744 5.61499 5.65453 5.71718 5.74776 5.79305 5.84941 5.86412 5.95282 6.02097 6.04798 6.15588 6.18538 6.29089 6.33889 6.35582 6.38813 6.50035 6.62459 6.74454 6.79895 6.82801 6.85924 7.21185 7.36785 7.42227 7.59196 7.66374 7.87699 8.52917 8.96915 9.56860 11.07085 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.003491 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.899397 B = 8018.975378 C = 8741.125564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.085 4.085 4 C -0.154 4.154 5 C 0.122 3.878 6 O -0.314 6.314 7 C 0.076 3.924 8 C -0.148 4.148 9 C -0.180 4.180 10 C -0.200 4.200 11 C -0.037 4.037 12 C 0.089 3.911 13 N -0.530 5.530 14 C 0.063 3.937 15 C -0.119 4.119 16 C -0.122 4.122 17 C 0.022 3.978 18 H 0.036 0.964 19 C -0.514 4.514 20 H 0.072 0.928 21 C 0.071 3.929 22 N -0.903 5.903 23 Si 0.888 3.112 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.263 1.263 27 C 0.077 3.923 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.023 0.977 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.263 0.737 50 H 0.026 0.974 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.333 16.364 9.547 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.100 4.100 3 C -0.103 4.103 4 C -0.173 4.173 5 C 0.077 3.923 6 O -0.228 6.228 7 C 0.020 3.980 8 C -0.205 4.205 9 C -0.237 4.237 10 C -0.219 4.219 11 C -0.037 4.037 12 C -0.038 4.038 13 N -0.255 5.255 14 C -0.065 4.065 15 C -0.157 4.157 16 C -0.159 4.159 17 C 0.002 3.998 18 H 0.054 0.946 19 C -0.552 4.552 20 H 0.090 0.910 21 C -0.131 4.131 22 N -0.541 5.541 23 Si 0.718 3.282 24 H -0.208 1.208 25 H -0.226 1.226 26 H -0.188 1.188 27 C -0.050 4.050 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.143 0.857 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.044 0.956 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.996 16.685 9.342 23.697 hybrid contribution 0.650 -0.403 -0.739 1.064 sum 14.646 16.282 8.602 23.529 Atomic orbital electron populations 1.20723 0.90652 1.01967 1.02932 1.19687 0.96564 0.91967 1.01768 1.20820 0.92866 0.97730 0.98895 1.20347 0.93756 0.95980 1.07184 1.18884 0.82188 0.93972 0.97272 1.86084 1.16383 1.32175 1.88162 1.22414 0.94229 0.84087 0.97263 1.21846 0.94209 1.02888 1.01543 1.22383 1.03168 1.01223 0.96956 1.21172 0.94644 0.97080 1.09011 1.19497 0.92326 0.95026 0.96868 1.21116 0.97980 0.92274 0.92409 1.62152 1.33025 1.27944 1.02356 1.22033 0.92049 0.99713 0.92709 1.21650 0.99857 0.99261 0.94902 1.22022 0.99746 0.94075 1.00087 1.19145 0.93449 0.97513 0.89653 0.94606 1.21001 1.38082 0.95769 1.00364 0.90998 1.24975 0.94721 0.94829 0.98548 1.69897 1.40326 1.16342 1.27549 0.86830 0.76414 0.82159 0.82780 1.20777 1.22647 1.18774 1.22113 0.97739 0.84920 1.00222 0.90636 0.91148 0.92619 0.85591 0.85678 0.90844 0.91575 0.90522 0.91635 0.91014 0.91524 0.91755 0.85677 0.94640 0.89594 0.91463 0.95883 0.93023 0.91865 0.92688 0.93607 0.92706 0.95601 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.60 36.01 0.35 -0.88 16 2 C -0.10 -1.24 5.88 -104.60 -0.62 -1.85 16 3 C -0.09 -0.96 9.69 -39.61 -0.38 -1.34 16 4 C -0.15 -1.79 9.99 -39.43 -0.39 -2.19 16 5 C 0.12 1.51 6.60 -39.22 -0.26 1.26 16 6 O -0.31 -3.71 9.80 -19.42 -0.19 -3.91 16 7 C 0.08 0.72 2.85 -26.73 -0.08 0.65 16 8 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 9 C -0.18 -1.51 9.17 37.16 0.34 -1.17 16 10 C -0.20 -2.52 6.84 -39.43 -0.27 -2.79 16 11 C -0.04 -0.49 3.68 -104.65 -0.39 -0.87 16 12 C 0.09 1.27 4.79 -4.97 -0.02 1.25 16 13 N -0.53 -8.98 4.80 -236.11 -1.13 -10.11 16 14 C 0.06 1.04 4.80 -3.84 -0.02 1.02 16 15 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 16 C -0.12 -2.64 4.74 -26.60 -0.13 -2.77 16 17 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 18 H 0.04 0.88 7.20 -51.93 -0.37 0.51 16 19 C -0.51 -14.30 9.14 -34.44 -0.31 -14.61 16 20 H 0.07 2.15 7.99 -52.48 -0.42 1.74 16 21 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 22 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 23 Si 0.89 22.18 24.36 -169.99 -4.14 18.03 16 24 H -0.28 -6.85 6.89 56.52 0.39 -6.46 16 25 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 27 C 0.08 1.53 4.65 -3.83 -0.02 1.51 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.84 6.12 -51.93 -0.32 0.52 16 30 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.60 6.91 -51.93 -0.36 0.24 16 40 H 0.13 1.49 5.41 -52.49 -0.28 1.21 16 41 H 0.04 0.50 7.94 -51.93 -0.41 0.09 16 42 H 0.09 1.16 6.40 -51.93 -0.33 0.83 16 43 H 0.07 1.06 6.03 -51.93 -0.31 0.75 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 1.06 3.37 -51.93 -0.17 0.88 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -30.33 382.67 -10.03 -40.35 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.83 Total: 0.33 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.27 Total: -23.60 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.36 Total: -36.98 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.19 Total: -3.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.33 -10.03 -40.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238485108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.057 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds