Wall clock time and date at job start Tue Mar 31 2020 11:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38293 * 119.94452 * 2 1 4 4 C 1.38117 * 120.05834 * 179.74586 * 3 2 1 5 5 C 1.38759 * 119.94179 * 0.51064 * 4 3 2 6 6 O 1.35899 * 120.05238 * 179.74325 * 5 4 3 7 7 C 1.42894 * 117.00308 * 3.21295 * 6 5 4 8 8 C 1.52994 * 109.47659 * 82.72680 * 7 6 5 9 9 C 1.53001 * 109.47164 * 202.72967 * 7 6 5 10 10 C 1.38713 * 119.88773 * 359.46531 * 5 4 3 11 11 C 1.38166 * 119.94195 * 0.28319 * 10 5 4 12 12 C 1.50704 * 119.96853 * 179.97438 * 11 10 5 13 13 N 1.46901 * 109.47136 * 278.75451 * 12 11 10 14 14 C 1.46848 * 110.99927 * 75.47612 * 13 12 11 15 15 C 1.53033 * 109.52424 * 174.15930 * 14 13 12 16 16 C 1.53126 * 109.27669 * 59.18177 * 15 14 13 17 17 C 1.53119 * 109.15962 * 302.34223 * 16 15 14 18 18 H 1.08993 * 109.50788 * 297.71903 * 17 16 15 19 19 C 1.50700 * 109.50101 * 177.63282 * 17 16 15 20 20 H 1.08002 * 120.00029 * 240.00434 * 19 17 16 21 21 C 1.37868 * 120.00004 * 60.00767 * 19 17 16 22 22 N 1.31515 * 120.00210 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00378 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47542 * 89.99342 * 23 21 19 25 25 H 1.48500 * 109.47174 * 209.99997 * 23 21 19 26 26 H 1.48501 * 109.46761 * 329.99747 * 23 21 19 27 27 C 1.46842 * 110.99912 * 311.26927 * 13 12 11 28 28 H 1.09001 * 109.47100 * 266.39807 * 1 2 3 29 29 H 1.08993 * 109.47632 * 26.40057 * 1 2 3 30 30 H 1.09002 * 109.47051 * 146.40205 * 1 2 3 31 31 H 1.08004 * 119.96743 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.02850 * 180.27911 * 4 3 2 33 33 H 1.09001 * 109.47037 * 322.72755 * 7 6 5 34 34 H 1.09002 * 109.47123 * 300.00519 * 8 7 6 35 35 H 1.09004 * 109.47512 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.46835 * 59.99952 * 8 7 6 37 37 H 1.09001 * 109.46971 * 299.99829 * 9 7 6 38 38 H 1.09000 * 109.47411 * 59.99232 * 9 7 6 39 39 H 1.09004 * 109.47479 * 179.97438 * 9 7 6 40 40 H 1.07997 * 120.02641 * 180.29859 * 10 5 4 41 41 H 1.09003 * 109.46633 * 38.75301 * 12 11 10 42 42 H 1.09000 * 109.46815 * 158.75210 * 12 11 10 43 43 H 1.09003 * 109.46769 * 294.17961 * 14 13 12 44 44 H 1.09004 * 109.46503 * 54.14820 * 14 13 12 45 45 H 1.09001 * 109.50578 * 179.11987 * 15 14 13 46 46 H 1.09000 * 109.50811 * 299.24289 * 15 14 13 47 47 H 1.08995 * 109.52093 * 62.25154 * 16 15 14 48 48 H 1.09001 * 109.51992 * 182.37826 * 16 15 14 49 49 H 0.96998 * 120.00741 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.46415 * 305.85611 * 27 13 12 51 51 H 1.09006 * 109.46293 * 65.82313 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2011 0.0053 5 6 4.2734 0.0001 -0.0001 6 8 5.6324 0.0002 -0.0002 7 6 6.2811 1.2711 0.0768 8 6 6.3500 1.7210 1.5375 9 6 7.6981 1.1555 -0.4886 10 6 3.5787 -1.2005 0.0004 11 6 2.1970 -1.1978 0.0004 12 6 1.4417 -2.5019 0.0004 13 7 1.3787 -3.0313 -1.3685 14 6 2.6687 -3.6066 -1.7701 15 6 2.5263 -4.2756 -3.1390 16 6 2.0688 -3.2351 -4.1651 17 6 0.7479 -2.6166 -3.6989 18 1 -0.0179 -3.3904 -3.6468 19 6 0.3201 -1.5500 -4.6738 20 1 0.1956 -0.5308 -4.3388 21 6 0.0876 -1.8753 -5.9932 22 7 0.2397 -3.1162 -6.4012 23 14 -0.4434 -0.5534 -7.2015 24 1 0.7574 0.0606 -7.8230 25 1 -1.2920 -1.1605 -8.2581 26 1 -1.2179 0.4909 -6.4839 27 6 0.9419 -1.9958 -2.3136 28 1 -0.3633 -0.0646 1.0256 29 1 -0.3634 0.9204 -0.4569 30 1 -0.3633 -0.8560 -0.5687 31 1 1.6558 2.1328 -0.0004 32 1 4.1170 2.1372 0.0099 33 1 5.7173 2.0024 -0.5023 34 1 5.3406 1.8033 1.9404 35 1 6.8453 2.6902 1.5962 36 1 6.9138 0.9896 2.1167 37 1 8.2618 0.4242 0.0905 38 1 7.6490 0.8350 -1.5293 39 1 8.1928 2.1251 -0.4304 40 1 4.1174 -2.1366 0.0011 41 1 1.9531 -3.2179 0.6437 42 1 0.4308 -2.3362 0.3728 43 1 3.4168 -2.8159 -1.8282 44 1 2.9806 -4.3480 -1.0343 45 1 3.4878 -4.6889 -3.4439 46 1 1.7885 -5.0756 -3.0783 47 1 2.8248 -2.4550 -4.2546 48 1 1.9254 -3.7162 -5.1326 49 1 0.0758 -3.3452 -7.3294 50 1 -0.0005 -1.5670 -1.9726 51 1 1.6980 -1.2126 -2.3692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238485109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:38 Heat of formation + Delta-G solvation = -24.650657 kcal Electronic energy + Delta-G solvation = -27981.592340 eV Core-core repulsion = 24459.436781 eV Total energy + Delta-G solvation = -3522.155558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.48517 -38.96928 -37.20432 -33.99942 -33.53132 -32.21468 -31.49086 -30.19478 -29.71659 -27.58492 -26.64253 -25.51371 -24.89062 -23.05253 -22.00118 -21.57008 -21.14666 -19.82558 -18.58181 -17.77043 -16.35033 -16.18987 -15.54099 -15.34008 -14.98302 -14.66641 -14.47819 -14.23552 -13.99107 -13.58282 -13.40599 -13.26959 -13.13988 -12.80242 -12.63960 -12.48142 -12.44691 -12.28752 -12.14839 -11.96266 -11.65463 -11.40903 -11.40080 -11.23617 -10.95512 -10.90986 -10.68057 -10.62153 -10.52862 -10.45498 -10.00566 -9.75067 -9.40658 -8.99556 -8.65012 -8.60226 -8.25281 -7.84866 -7.59568 -5.92234 -3.97890 1.45622 1.59383 3.15977 3.33405 3.40060 3.43033 3.84658 4.45640 4.53872 4.67322 4.70237 4.79631 4.92477 4.98691 5.12149 5.24800 5.26457 5.36721 5.37920 5.43478 5.46955 5.52341 5.54271 5.73861 5.80185 5.82742 5.84913 5.89456 5.90747 5.93156 6.01596 6.12538 6.20127 6.24570 6.41246 6.45661 6.52856 6.54640 6.63946 6.79628 6.81838 6.87491 6.94104 7.08967 7.29337 7.46567 7.52676 7.72363 7.80668 7.87654 8.14991 8.23943 8.54880 9.06164 9.65994 11.13756 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003870 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.965966 B = 7232.653767 C = 7495.008921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C -0.082 4.082 4 C -0.212 4.212 5 C 0.124 3.876 6 O -0.312 6.312 7 C 0.076 3.924 8 C -0.178 4.178 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.069 4.069 12 C 0.086 3.914 13 N -0.525 5.525 14 C 0.055 3.945 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.054 3.946 18 H 0.033 0.967 19 C -0.511 4.511 20 H 0.052 0.948 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.064 3.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.028 0.972 48 H 0.090 0.910 49 H 0.259 0.741 50 H 0.063 0.937 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 7.277 15.829 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.230 4.230 5 C 0.079 3.921 6 O -0.227 6.227 7 C 0.019 3.981 8 C -0.236 4.236 9 C -0.205 4.205 10 C -0.160 4.160 11 C -0.071 4.071 12 C -0.042 4.042 13 N -0.247 5.247 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.148 4.148 17 C 0.035 3.965 18 H 0.051 0.949 19 C -0.550 4.550 20 H 0.070 0.930 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.062 4.062 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.307 6.600 15.634 19.355 hybrid contribution 0.467 1.763 -0.764 1.977 sum 9.774 8.363 14.870 19.662 Atomic orbital electron populations 1.21007 0.91160 1.03825 1.01871 1.19680 0.96248 0.92289 1.02436 1.20780 0.93203 0.97585 0.98419 1.21133 0.95280 0.96811 1.09823 1.18893 0.82083 0.94095 0.97028 1.86113 1.16493 1.31627 1.88421 1.22388 0.94132 0.84805 0.96743 1.22359 1.03038 1.01870 0.96299 1.21839 0.93901 1.02744 1.02041 1.20284 0.93193 0.96059 1.06503 1.20397 0.92905 0.96731 0.97074 1.21376 0.99542 0.90507 0.92740 1.62473 1.28087 1.33395 1.00729 1.22165 0.90128 0.97437 0.97516 1.21674 0.99673 0.99558 0.94592 1.21638 0.97638 0.96069 0.99434 1.18674 0.93813 0.95444 0.88533 0.94929 1.21141 1.45339 0.94758 0.93746 0.92955 1.24914 0.95482 0.95170 0.98210 1.69891 1.49523 1.17089 1.16270 0.86669 0.78551 0.82103 0.81108 1.20860 1.21262 1.19982 1.22449 0.98170 0.91690 0.93924 0.91781 0.91818 0.89816 0.86148 0.85828 0.90935 0.91863 0.91214 0.91554 0.91535 0.91502 0.90676 0.85630 0.90677 0.89723 0.95085 0.92570 0.93655 0.92163 0.95347 0.89205 0.93139 0.91847 0.95661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 8.85 36.00 0.32 -1.32 16 2 C -0.11 -1.57 5.13 -104.60 -0.54 -2.11 16 3 C -0.08 -1.14 9.68 -39.61 -0.38 -1.52 16 4 C -0.21 -2.89 8.31 -39.43 -0.33 -3.22 16 5 C 0.12 1.85 6.54 -39.21 -0.26 1.59 16 6 O -0.31 -4.36 9.81 -19.42 -0.19 -4.55 16 7 C 0.08 0.78 2.87 -26.73 -0.08 0.71 16 8 C -0.18 -1.53 9.24 37.15 0.34 -1.18 16 9 C -0.15 -1.27 9.56 37.16 0.36 -0.91 16 10 C -0.14 -2.21 8.15 -39.43 -0.32 -2.53 16 11 C -0.07 -1.07 3.74 -104.65 -0.39 -1.46 16 12 C 0.09 1.32 5.30 -4.97 -0.03 1.29 16 13 N -0.52 -9.77 4.86 -236.10 -1.15 -10.92 16 14 C 0.06 1.01 4.83 -3.84 -0.02 0.99 16 15 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 16 C -0.11 -2.68 5.02 -26.60 -0.13 -2.81 16 17 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 18 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 19 C -0.51 -14.21 8.57 -34.44 -0.30 -14.50 16 20 H 0.05 1.44 7.75 -52.49 -0.41 1.04 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.89 -25.66 11.35 55.43 0.63 -25.04 16 23 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.06 1.38 3.49 -3.83 -0.01 1.36 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.80 8.06 -51.93 -0.42 0.39 16 30 H 0.08 1.25 3.98 -51.93 -0.21 1.04 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.12 1.41 5.67 -52.49 -0.30 1.11 16 33 H 0.07 0.73 6.03 -51.93 -0.31 0.42 16 34 H 0.06 0.59 7.27 -51.93 -0.38 0.21 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.13 1.91 7.24 -52.49 -0.38 1.53 16 41 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 42 H 0.08 1.21 6.29 -51.93 -0.33 0.88 16 43 H 0.03 0.59 6.10 -51.93 -0.32 0.27 16 44 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 49 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.06 1.33 5.44 -51.93 -0.28 1.05 16 51 H 0.03 0.58 6.81 -51.93 -0.35 0.22 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -29.80 380.21 -10.83 -40.63 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.61 Total: 2.93 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.23 Total: -25.30 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.52 Total: -35.95 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.19 Total: -4.55 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.80 -10.83 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238485109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.983 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds