Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38293 * 119.94452 * 2 1 4 4 C 1.38117 * 120.05834 * 179.74586 * 3 2 1 5 5 C 1.38759 * 119.94179 * 0.51064 * 4 3 2 6 6 O 1.35899 * 120.05238 * 179.74325 * 5 4 3 7 7 C 1.42894 * 117.00308 * 3.21295 * 6 5 4 8 8 C 1.52994 * 109.47659 * 82.72680 * 7 6 5 9 9 C 1.53001 * 109.47164 * 202.72967 * 7 6 5 10 10 C 1.38713 * 119.88773 * 359.46531 * 5 4 3 11 11 C 1.38166 * 119.94195 * 0.28319 * 10 5 4 12 12 C 1.50704 * 119.96853 * 179.97438 * 11 10 5 13 13 N 1.46901 * 109.47136 * 278.75451 * 12 11 10 14 14 C 1.46848 * 110.99927 * 75.47612 * 13 12 11 15 15 C 1.53033 * 109.52424 * 174.15930 * 14 13 12 16 16 C 1.53126 * 109.27669 * 59.18177 * 15 14 13 17 17 C 1.53119 * 109.15962 * 302.34223 * 16 15 14 18 18 H 1.08993 * 109.50788 * 297.71903 * 17 16 15 19 19 C 1.50700 * 109.50101 * 177.63282 * 17 16 15 20 20 H 1.08002 * 120.00029 * 240.00434 * 19 17 16 21 21 C 1.37868 * 120.00004 * 60.00767 * 19 17 16 22 22 N 1.31515 * 120.00210 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00378 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47542 * 89.99342 * 23 21 19 25 25 H 1.48500 * 109.47174 * 209.99997 * 23 21 19 26 26 H 1.48501 * 109.46761 * 329.99747 * 23 21 19 27 27 C 1.46842 * 110.99912 * 311.26927 * 13 12 11 28 28 H 1.09001 * 109.47100 * 266.39807 * 1 2 3 29 29 H 1.08993 * 109.47632 * 26.40057 * 1 2 3 30 30 H 1.09002 * 109.47051 * 146.40205 * 1 2 3 31 31 H 1.08004 * 119.96743 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.02850 * 180.27911 * 4 3 2 33 33 H 1.09001 * 109.47037 * 322.72755 * 7 6 5 34 34 H 1.09002 * 109.47123 * 300.00519 * 8 7 6 35 35 H 1.09004 * 109.47512 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.46835 * 59.99952 * 8 7 6 37 37 H 1.09001 * 109.46971 * 299.99829 * 9 7 6 38 38 H 1.09000 * 109.47411 * 59.99232 * 9 7 6 39 39 H 1.09004 * 109.47479 * 179.97438 * 9 7 6 40 40 H 1.07997 * 120.02641 * 180.29859 * 10 5 4 41 41 H 1.09003 * 109.46633 * 38.75301 * 12 11 10 42 42 H 1.09000 * 109.46815 * 158.75210 * 12 11 10 43 43 H 1.09003 * 109.46769 * 294.17961 * 14 13 12 44 44 H 1.09004 * 109.46503 * 54.14820 * 14 13 12 45 45 H 1.09001 * 109.50578 * 179.11987 * 15 14 13 46 46 H 1.09000 * 109.50811 * 299.24289 * 15 14 13 47 47 H 1.08995 * 109.52093 * 62.25154 * 16 15 14 48 48 H 1.09001 * 109.51992 * 182.37826 * 16 15 14 49 49 H 0.96998 * 120.00741 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.46415 * 305.85611 * 27 13 12 51 51 H 1.09006 * 109.46293 * 65.82313 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2011 0.0053 5 6 4.2734 0.0001 -0.0001 6 8 5.6324 0.0002 -0.0002 7 6 6.2811 1.2711 0.0768 8 6 6.3500 1.7210 1.5375 9 6 7.6981 1.1555 -0.4886 10 6 3.5787 -1.2005 0.0004 11 6 2.1970 -1.1978 0.0004 12 6 1.4417 -2.5019 0.0004 13 7 1.3787 -3.0313 -1.3685 14 6 2.6687 -3.6066 -1.7701 15 6 2.5263 -4.2756 -3.1390 16 6 2.0688 -3.2351 -4.1651 17 6 0.7479 -2.6166 -3.6989 18 1 -0.0179 -3.3904 -3.6468 19 6 0.3201 -1.5500 -4.6738 20 1 0.1956 -0.5308 -4.3388 21 6 0.0876 -1.8753 -5.9932 22 7 0.2397 -3.1162 -6.4012 23 14 -0.4434 -0.5534 -7.2015 24 1 0.7574 0.0606 -7.8230 25 1 -1.2920 -1.1605 -8.2581 26 1 -1.2179 0.4909 -6.4839 27 6 0.9419 -1.9958 -2.3136 28 1 -0.3633 -0.0646 1.0256 29 1 -0.3634 0.9204 -0.4569 30 1 -0.3633 -0.8560 -0.5687 31 1 1.6558 2.1328 -0.0004 32 1 4.1170 2.1372 0.0099 33 1 5.7173 2.0024 -0.5023 34 1 5.3406 1.8033 1.9404 35 1 6.8453 2.6902 1.5962 36 1 6.9138 0.9896 2.1167 37 1 8.2618 0.4242 0.0905 38 1 7.6490 0.8350 -1.5293 39 1 8.1928 2.1251 -0.4304 40 1 4.1174 -2.1366 0.0011 41 1 1.9531 -3.2179 0.6437 42 1 0.4308 -2.3362 0.3728 43 1 3.4168 -2.8159 -1.8282 44 1 2.9806 -4.3480 -1.0343 45 1 3.4878 -4.6889 -3.4439 46 1 1.7885 -5.0756 -3.0783 47 1 2.8248 -2.4550 -4.2546 48 1 1.9254 -3.7162 -5.1326 49 1 0.0758 -3.3452 -7.3294 50 1 -0.0005 -1.5670 -1.9726 51 1 1.6980 -1.2126 -2.3692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238485109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = -40.374017 kcal Electronic energy + Delta-G solvation = -27982.274156 eV Core-core repulsion = 24459.436781 eV Total energy + Delta-G solvation = -3522.837374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.58423 -40.22213 -38.55316 -35.70366 -34.48136 -33.85198 -32.63293 -31.59547 -31.46185 -28.26828 -27.86989 -26.92282 -26.68565 -24.31772 -23.28911 -22.93212 -22.63566 -20.97699 -20.15689 -18.92726 -18.38824 -17.25076 -16.86188 -16.47346 -16.37925 -16.11386 -15.78954 -15.57800 -15.27916 -14.95188 -14.60159 -14.51140 -14.38539 -14.22184 -14.05241 -13.72545 -13.57258 -13.44057 -13.16083 -13.02889 -12.88376 -12.84033 -12.78695 -12.56843 -12.46072 -12.39515 -12.16771 -12.03399 -11.76934 -11.72754 -11.59005 -11.40899 -11.34238 -10.84930 -10.58477 -10.36652 -9.80037 -9.15176 -8.89369 -8.06648 -6.20350 0.34503 0.48964 1.40147 1.40530 1.50923 2.24685 2.43034 2.72955 3.20121 3.25005 3.77421 3.81290 3.87948 3.98086 4.01785 4.12241 4.19019 4.23132 4.28470 4.31239 4.39277 4.49373 4.58527 4.66594 4.68172 4.74344 4.78918 4.81589 4.84017 4.84727 4.86530 4.88372 4.94897 5.01718 5.10744 5.12889 5.16551 5.18458 5.23251 5.32681 5.38660 5.40969 5.45627 5.54241 5.64266 5.72054 5.88281 5.98677 6.13897 6.22281 6.35202 6.48337 6.52024 6.92021 7.47113 8.98075 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003870 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.965966 B = 7232.653767 C = 7495.008921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.211 4.211 5 C 0.113 3.887 6 O -0.329 6.329 7 C 0.065 3.935 8 C -0.172 4.172 9 C -0.146 4.146 10 C -0.158 4.158 11 C -0.081 4.081 12 C 0.089 3.911 13 N -0.532 5.532 14 C 0.061 3.939 15 C -0.111 4.111 16 C -0.102 4.102 17 C 0.051 3.949 18 H -0.002 1.002 19 C -0.532 4.532 20 H 0.048 0.952 21 C 0.015 3.985 22 N -0.915 5.915 23 Si 0.950 3.050 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.267 1.267 27 C 0.088 3.912 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.025 0.975 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.012 0.988 48 H 0.057 0.943 49 H 0.260 0.740 50 H 0.066 0.934 51 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 8.833 17.215 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.230 4.230 5 C 0.068 3.932 6 O -0.244 6.244 7 C 0.009 3.991 8 C -0.229 4.229 9 C -0.203 4.203 10 C -0.177 4.177 11 C -0.083 4.083 12 C -0.038 4.038 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.149 4.149 16 C -0.140 4.140 17 C 0.033 3.967 18 H 0.016 0.984 19 C -0.571 4.571 20 H 0.067 0.933 21 C -0.183 4.183 22 N -0.555 5.555 23 Si 0.776 3.224 24 H -0.204 1.204 25 H -0.207 1.207 26 H -0.191 1.191 27 C -0.039 4.039 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.043 0.957 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 9.984 8.160 17.040 21.368 hybrid contribution 0.312 1.298 -1.177 1.779 sum 10.295 9.458 15.863 21.144 Atomic orbital electron populations 1.20977 0.90315 1.03192 1.02987 1.19947 0.97060 0.92559 1.02525 1.21103 0.93522 0.98232 0.97763 1.21407 0.95426 0.97349 1.08815 1.19050 0.82732 0.94367 0.97032 1.86098 1.16085 1.33886 1.88370 1.22723 0.94638 0.83575 0.98155 1.22319 1.02817 1.03044 0.94765 1.21875 0.93048 1.04273 1.01093 1.20403 0.93490 0.96512 1.07311 1.20397 0.92960 0.96942 0.97971 1.21434 1.00611 0.91106 0.90684 1.62394 1.28474 1.32723 1.01791 1.22134 0.89812 0.97797 0.96923 1.21594 1.00327 0.98195 0.94788 1.21439 0.96861 0.96430 0.99289 1.18612 0.93099 0.94225 0.90799 0.98379 1.21485 1.45686 0.95146 0.94769 0.93330 1.25686 0.95494 0.97232 0.99930 1.70032 1.50063 1.18803 1.16602 0.85676 0.78267 0.79617 0.78839 1.20434 1.20719 1.19121 1.22016 0.97943 0.91479 0.92505 0.89567 0.91267 0.91666 0.83955 0.83704 0.90773 0.92683 0.88751 0.91750 0.91487 0.92703 0.88030 0.85788 0.88670 0.88671 0.95688 0.89349 0.91631 0.92729 0.96883 0.92404 0.93116 0.91586 0.97245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.85 71.23 0.63 -2.37 16 2 C -0.12 -3.42 5.13 -19.85 -0.10 -3.53 16 3 C -0.09 -2.31 9.68 22.25 0.22 -2.09 16 4 C -0.21 -5.46 8.31 22.37 0.19 -5.28 16 5 C 0.11 3.30 6.54 22.51 0.15 3.45 16 6 O -0.33 -8.98 9.81 -92.41 -0.91 -9.88 16 7 C 0.06 1.24 2.87 30.59 0.09 1.32 16 8 C -0.17 -2.59 9.24 71.98 0.67 -1.92 16 9 C -0.15 -2.25 9.56 71.98 0.69 -1.56 16 10 C -0.16 -4.84 8.15 22.37 0.18 -4.66 16 11 C -0.08 -2.43 3.74 -19.88 -0.07 -2.51 16 12 C 0.09 2.59 5.30 85.56 0.45 3.05 16 13 N -0.53 -19.49 4.86 -900.89 -4.38 -23.87 16 14 C 0.06 2.16 4.83 86.32 0.42 2.58 16 15 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 16 C -0.10 -5.14 5.02 30.68 0.15 -4.99 16 17 C 0.05 2.71 2.26 -11.48 -0.03 2.68 16 18 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 19 C -0.53 -30.36 8.57 25.60 0.22 -30.14 16 20 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 21 C 0.02 0.86 5.30 84.65 0.45 1.31 16 22 N -0.92 -54.32 11.35 21.44 0.24 -54.07 16 23 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.09 3.82 3.49 86.33 0.30 4.12 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 30 H 0.06 1.90 3.98 -2.39 -0.01 1.89 16 31 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.15 2.99 5.67 -2.91 -0.02 2.98 16 33 H 0.07 1.37 6.03 -2.39 -0.01 1.36 16 34 H 0.05 0.92 7.27 -2.39 -0.02 0.90 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 3.71 7.24 -2.91 -0.02 3.69 16 41 H 0.10 2.39 7.87 -2.39 -0.02 2.37 16 42 H 0.10 2.57 6.29 -2.39 -0.02 2.55 16 43 H 0.02 0.93 6.10 -2.39 -0.01 0.91 16 44 H 0.09 2.59 7.96 -2.39 -0.02 2.57 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 3.27 6.15 -2.39 -0.01 3.25 16 49 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.07 2.81 5.44 -2.38 -0.01 2.80 16 51 H 0.01 0.44 6.81 -2.38 -0.02 0.42 16 Total: -1.00 -65.89 380.21 2.67 -63.23 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.90 Total: 22.82 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 4.78 Total: -44.86 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -4.13 Total: -77.94 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.91 Total: -9.88 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.89 2.67 -63.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238485109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.852 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds