Wall clock time and date at job start Tue Mar 31 2020 11:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38289 * 119.94635 * 2 1 4 4 C 1.38121 * 120.05978 * 179.73869 * 3 2 1 5 5 C 1.38755 * 119.94139 * 0.50984 * 4 3 2 6 6 O 1.35894 * 120.05391 * 179.74060 * 5 4 3 7 7 C 1.42909 * 116.99906 * 174.30116 * 6 5 4 8 8 C 1.53001 * 109.46881 * 85.04541 * 7 6 5 9 9 C 1.53000 * 109.47143 * 205.04446 * 7 6 5 10 10 C 1.38710 * 119.88831 * 359.46539 * 5 4 3 11 11 C 1.38170 * 119.94411 * 0.28013 * 10 5 4 12 12 C 1.50703 * 119.97165 * 180.02562 * 11 10 5 13 13 N 1.46896 * 109.46944 * 259.99719 * 12 11 10 14 14 C 1.46839 * 111.00320 * 45.79284 * 13 12 11 15 15 C 1.53033 * 109.52596 * 185.83841 * 14 13 12 16 16 C 1.53123 * 109.27554 * 300.81771 * 15 14 13 17 17 C 1.50704 * 109.57516 * 177.59291 * 16 15 14 18 18 H 1.08003 * 119.99827 * 240.29030 * 17 16 15 19 19 C 1.37877 * 119.99996 * 60.27956 * 17 16 15 20 20 N 1.31513 * 120.00359 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00063 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46976 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47021 * 120.00452 * 21 19 17 24 24 H 1.48501 * 109.46975 * 240.00990 * 21 19 17 25 25 C 1.53112 * 109.15985 * 57.65757 * 16 15 14 26 26 C 1.46848 * 110.99568 * 169.99910 * 13 12 11 27 27 H 1.08995 * 109.47087 * 270.02828 * 1 2 3 28 28 H 1.09004 * 109.46506 * 30.02736 * 1 2 3 29 29 H 1.09002 * 109.46789 * 150.02173 * 1 2 3 30 30 H 1.08004 * 119.97026 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.02611 * 180.27642 * 4 3 2 32 32 H 1.08996 * 109.46897 * 325.04754 * 7 6 5 33 33 H 1.08999 * 109.47128 * 59.99858 * 8 7 6 34 34 H 1.09002 * 109.47015 * 300.00171 * 8 7 6 35 35 H 1.08998 * 109.46875 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47070 * 300.00267 * 9 7 6 37 37 H 1.09000 * 109.46982 * 60.00214 * 9 7 6 38 38 H 1.08998 * 109.46924 * 179.97438 * 9 7 6 39 39 H 1.07998 * 120.03109 * 180.29644 * 10 5 4 40 40 H 1.09000 * 109.47142 * 20.00210 * 12 11 10 41 41 H 1.09000 * 109.46745 * 140.00144 * 12 11 10 42 42 H 1.09007 * 109.46285 * 305.85589 * 14 13 12 43 43 H 1.09008 * 109.46252 * 65.81791 * 14 13 12 44 44 H 1.09004 * 109.50566 * 180.88304 * 15 14 13 45 45 H 1.08991 * 109.54127 * 60.77863 * 15 14 13 46 46 H 1.09000 * 109.52401 * 297.74775 * 16 15 14 47 47 H 0.97000 * 120.00729 * 179.97438 * 20 19 17 48 48 H 1.09006 * 109.50552 * 182.40556 * 25 16 15 49 49 H 1.08998 * 109.54239 * 62.30583 * 25 16 15 50 50 H 1.08998 * 109.46845 * 294.17699 * 26 13 12 51 51 H 1.09001 * 109.46143 * 54.15923 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1983 0.0000 4 6 3.5786 1.2010 0.0055 5 6 4.2735 0.0000 0.0002 6 8 5.6325 0.0001 0.0003 7 6 6.2813 -1.2675 0.1212 8 6 6.4018 -1.9125 -1.2609 9 6 7.6772 -1.0712 0.7159 10 6 3.5788 -1.2006 0.0008 11 6 2.1971 -1.1979 0.0006 12 6 1.4417 -2.5019 0.0018 13 7 0.9883 -2.8063 -1.3618 14 6 2.0670 -2.5933 -2.3350 15 6 1.5209 -2.7782 -3.7526 16 6 0.9520 -4.1927 -3.8947 17 6 0.3590 -4.3627 -5.2697 18 1 -0.6891 -4.5987 -5.3804 19 6 1.1545 -4.2167 -6.3863 20 7 2.4308 -3.9297 -6.2516 21 14 0.4194 -4.4267 -8.0907 22 1 -1.0265 -4.7438 -7.9706 23 1 0.5874 -3.1682 -8.8608 24 1 1.1126 -5.5348 -8.7957 25 6 -0.1359 -4.4052 -2.8385 26 6 0.4583 -4.1731 -1.4473 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6560 2.1328 -0.0004 31 1 4.1171 2.1371 0.0100 32 1 5.6957 -1.9144 0.7743 33 1 6.9873 -1.2655 -1.9141 34 1 5.4073 -2.0523 -1.6846 35 1 6.8963 -2.8795 -1.1686 36 1 8.2627 -0.4241 0.0628 37 1 7.5913 -0.6116 1.7005 38 1 8.1719 -2.0380 0.8085 39 1 4.1174 -2.1367 0.0016 40 1 2.0952 -3.3000 0.3541 41 1 0.5784 -2.4210 0.6622 42 1 2.4601 -1.5824 -2.2262 43 1 2.8650 -3.3142 -2.1563 44 1 2.3255 -2.6355 -4.4741 45 1 0.7326 -2.0486 -3.9376 46 1 1.7487 -4.9221 -3.7489 47 1 2.9906 -3.8273 -7.0372 48 1 -0.5152 -5.4248 -2.9067 49 1 -0.9510 -3.7017 -3.0080 50 1 1.2636 -4.8866 -1.2728 51 1 -0.3175 -4.3096 -0.6939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238487163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:00 Heat of formation + Delta-G solvation = -43.131233 kcal Electronic energy + Delta-G solvation = -27828.264325 eV Core-core repulsion = 24305.307389 eV Total energy + Delta-G solvation = -3522.956936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51030 -40.02487 -38.73299 -35.90801 -34.45984 -33.56397 -32.54171 -31.77069 -31.36685 -28.54047 -28.12034 -27.12862 -26.03581 -23.95017 -23.66989 -23.14669 -21.93561 -21.30400 -20.30260 -18.83220 -18.42936 -17.22971 -16.92864 -16.44699 -16.33061 -16.28673 -15.88843 -15.35987 -15.06453 -15.00983 -14.73508 -14.51474 -14.36795 -14.12908 -13.98753 -13.70970 -13.53441 -13.32442 -13.14909 -13.11218 -13.00573 -12.87184 -12.74066 -12.57429 -12.44592 -12.28732 -12.15082 -12.06556 -11.95184 -11.86970 -11.51918 -11.45897 -11.32280 -10.80156 -10.64763 -10.38077 -9.79700 -9.18184 -8.87647 -8.07900 -6.21247 0.35792 0.51059 1.39066 1.41128 1.52414 2.26044 2.43537 2.69748 3.18390 3.22659 3.67717 3.79443 3.88294 3.94625 4.06228 4.13665 4.22329 4.25494 4.29600 4.36217 4.40194 4.49575 4.57436 4.62435 4.65220 4.71968 4.74031 4.79843 4.83869 4.87925 4.90363 4.93136 4.98056 4.99124 5.09242 5.11874 5.17094 5.21949 5.24228 5.31408 5.34209 5.47158 5.48752 5.58062 5.62987 5.80624 5.92968 6.00077 6.02731 6.26857 6.33192 6.40926 6.50473 6.91069 7.46757 8.96772 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003846 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.713707 B = 7278.108477 C = 8377.784495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C -0.086 4.086 4 C -0.161 4.161 5 C 0.109 3.891 6 O -0.325 6.325 7 C 0.073 3.927 8 C -0.180 4.180 9 C -0.142 4.142 10 C -0.206 4.206 11 C -0.052 4.052 12 C 0.094 3.906 13 N -0.526 5.526 14 C 0.080 3.920 15 C -0.091 4.091 16 C 0.045 3.955 17 C -0.531 4.531 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.919 5.919 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.098 4.098 26 C 0.065 3.935 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.037 0.963 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.006 0.994 44 H 0.055 0.945 45 H 0.028 0.972 46 H -0.014 1.014 47 H 0.259 0.741 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.020 0.980 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 7.520 17.863 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.103 4.103 4 C -0.180 4.180 5 C 0.064 3.936 6 O -0.239 6.239 7 C 0.018 3.982 8 C -0.237 4.237 9 C -0.199 4.199 10 C -0.225 4.225 11 C -0.052 4.052 12 C -0.033 4.033 13 N -0.250 5.250 14 C -0.048 4.048 15 C -0.130 4.130 16 C 0.026 3.974 17 C -0.569 4.569 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.559 5.559 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.136 4.136 26 C -0.063 4.063 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.055 0.945 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.004 0.996 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.038 0.962 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.086 7.999 17.631 19.787 hybrid contribution 0.724 -1.032 -1.281 1.797 sum 4.810 6.967 16.350 18.412 Atomic orbital electron populations 1.20797 0.89768 1.03597 1.02606 1.19935 0.97416 0.92035 1.01650 1.21130 0.92807 0.98526 0.97868 1.20653 0.94306 0.96327 1.06669 1.19101 0.82640 0.94355 0.97474 1.86073 1.16167 1.33542 1.88155 1.22607 0.95242 0.83310 0.97074 1.22378 1.02139 1.02125 0.97060 1.21854 0.92685 1.04054 1.01291 1.21217 0.94863 0.97292 1.09136 1.19528 0.92443 0.95224 0.98048 1.21139 0.98681 0.92741 0.90710 1.62076 1.33639 1.25617 1.03714 1.21920 0.91357 0.98647 0.92861 1.21385 0.99572 0.98250 0.93790 1.18653 0.93066 0.92518 0.93119 1.21627 0.95613 1.47199 0.92427 0.92978 1.25741 0.95197 0.94962 1.02735 1.70035 1.06091 1.49646 1.30115 0.85602 0.78891 0.77589 0.80167 1.19020 1.20779 1.20669 1.21526 0.98447 0.99909 0.93686 1.22099 0.98507 0.87549 0.98097 0.90181 0.91325 0.90957 0.83078 0.84234 0.90840 0.91695 0.94149 0.89383 0.91554 0.91284 0.88614 0.85865 0.94476 0.87906 0.92114 0.97614 0.92667 0.95316 0.99616 0.93223 0.92678 0.92796 0.96152 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.26 71.24 0.66 -1.81 16 2 C -0.11 -2.84 5.88 -19.85 -0.12 -2.95 16 3 C -0.09 -2.02 9.69 22.25 0.22 -1.81 16 4 C -0.16 -4.09 9.99 22.37 0.22 -3.87 16 5 C 0.11 3.07 6.60 22.51 0.15 3.22 16 6 O -0.32 -8.75 9.80 -92.36 -0.91 -9.66 16 7 C 0.07 1.60 2.85 30.59 0.09 1.69 16 8 C -0.18 -4.28 9.17 71.98 0.66 -3.62 16 9 C -0.14 -2.24 9.56 71.98 0.69 -1.55 16 10 C -0.21 -5.87 6.84 22.37 0.15 -5.72 16 11 C -0.05 -1.46 3.68 -19.88 -0.07 -1.54 16 12 C 0.09 2.59 4.53 85.56 0.39 2.98 16 13 N -0.53 -17.94 4.14 -900.93 -3.73 -21.66 16 14 C 0.08 3.27 4.80 86.33 0.41 3.69 16 15 C -0.09 -4.56 5.12 30.65 0.16 -4.40 16 16 C 0.04 2.31 2.16 -11.46 -0.02 2.29 16 17 C -0.53 -29.95 8.56 25.60 0.22 -29.74 16 18 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 19 C 0.01 0.67 5.31 84.65 0.45 1.12 16 20 N -0.92 -54.46 11.37 21.45 0.24 -54.22 16 21 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 25 C -0.10 -4.06 5.32 30.65 0.16 -3.89 16 26 C 0.06 2.20 5.42 86.33 0.47 2.67 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.39 8.08 -2.38 -0.02 1.37 16 29 H 0.07 1.87 6.34 -2.39 -0.02 1.85 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.07 1.55 6.30 -2.39 -0.02 1.53 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.18 6.92 -2.39 -0.02 1.16 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 3.44 5.41 -2.91 -0.02 3.42 16 40 H 0.04 1.00 7.94 -2.39 -0.02 0.98 16 41 H 0.10 2.39 7.28 -2.39 -0.02 2.38 16 42 H 0.06 2.48 6.03 -2.38 -0.01 2.47 16 43 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.05 3.13 6.18 -2.38 -0.01 3.11 16 45 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 46 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 49 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 Total: -1.00 -64.44 389.40 3.40 -61.04 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.88 Total: 21.16 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 4.88 Total: -43.24 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -3.48 Total: -75.88 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.91 Total: -9.66 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.44 3.40 -61.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238487163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.909 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds