Wall clock time and date at job start Tue Mar 31 2020 11:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99903 * 2 1 4 4 C 1.38752 * 120.05661 * 0.25492 * 3 2 1 5 5 C 1.38122 * 119.94424 * 180.29584 * 4 3 2 6 6 C 1.50703 * 119.97513 * 179.75036 * 5 4 3 7 7 C 1.38286 * 120.05461 * 359.47641 * 5 4 3 8 8 C 1.50700 * 119.94610 * 180.25515 * 7 5 4 9 9 C 1.38250 * 120.11256 * 0.22740 * 7 5 4 10 10 C 1.38161 * 120.05385 * 0.04896 * 9 7 5 11 11 C 1.50697 * 120.02973 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47152 * 269.96571 * 11 10 9 13 13 C 1.46897 * 111.00132 * 174.78653 * 12 11 10 14 14 C 1.50697 * 109.47369 * 183.65610 * 13 12 11 15 15 H 1.07998 * 119.99802 * 5.82702 * 14 13 12 16 16 C 1.37878 * 120.00160 * 185.82512 * 14 13 12 17 17 N 1.31515 * 119.99843 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99986 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47099 * 90.00086 * 18 16 14 20 20 H 1.48499 * 109.47051 * 210.00254 * 18 16 14 21 21 H 1.48499 * 109.46978 * 329.99811 * 18 16 14 22 22 C 1.46891 * 110.99961 * 298.74362 * 12 11 10 23 23 C 1.54261 * 110.03616 * 268.71796 * 22 12 11 24 24 C 1.54963 * 104.16570 * 217.13618 * 23 22 12 25 25 C 1.54892 * 102.77350 * 37.88653 * 24 23 22 26 26 C 1.53876 * 110.03319 * 151.50128 * 22 12 11 27 27 H 1.09007 * 109.46691 * 299.99717 * 1 2 3 28 28 H 1.09000 * 109.47701 * 59.99536 * 1 2 3 29 29 H 1.09001 * 109.47210 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.03141 * 0.04885 * 4 3 2 31 31 H 1.09000 * 109.46686 * 269.72290 * 6 5 4 32 32 H 1.08998 * 109.46829 * 149.72558 * 6 5 4 33 33 H 1.08995 * 109.46925 * 29.72544 * 6 5 4 34 34 H 1.09006 * 109.47427 * 89.99758 * 8 7 5 35 35 H 1.09007 * 109.46947 * 209.99893 * 8 7 5 36 36 H 1.08996 * 109.46889 * 329.99777 * 8 7 5 37 37 H 1.07997 * 119.97574 * 180.02562 * 9 7 5 38 38 H 1.09005 * 109.47171 * 29.96259 * 11 10 9 39 39 H 1.08998 * 109.47600 * 149.96627 * 11 10 9 40 40 H 1.08992 * 109.47398 * 303.66166 * 13 12 11 41 41 H 1.09004 * 109.47088 * 63.65892 * 13 12 11 42 42 H 0.96997 * 119.99931 * 180.02562 * 17 16 14 43 43 H 1.09007 * 110.02176 * 30.10885 * 22 12 11 44 44 H 1.09004 * 110.48486 * 335.78640 * 23 22 12 45 45 H 1.08999 * 110.48901 * 98.42281 * 23 22 12 46 46 H 1.08992 * 110.72392 * 279.57647 * 24 23 22 47 47 H 1.09001 * 110.92439 * 156.28744 * 24 23 22 48 48 H 1.08998 * 110.48796 * 203.40417 * 25 24 23 49 49 H 1.09002 * 110.60025 * 80.81955 * 25 24 23 50 50 H 1.09004 * 110.03466 * 238.57156 * 26 22 12 51 51 H 1.08999 * 110.02987 * 359.97438 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9208 3.6048 -0.0008 6 6 1.1019 4.8699 -0.0007 7 6 3.3019 3.6758 -0.0014 8 6 3.9861 5.0185 -0.0024 9 6 4.0560 2.5171 -0.0006 10 6 3.4312 1.2849 -0.0001 11 6 4.2537 0.0222 0.0002 12 7 4.5202 -0.3890 -1.3847 13 6 5.4232 -1.5470 -1.4255 14 6 5.7444 -1.8833 -2.8590 15 1 5.3978 -1.2410 -3.6550 16 6 6.4807 -3.0110 -3.1542 17 7 6.7614 -3.3042 -4.4052 18 14 7.0796 -4.1223 -1.7774 19 1 6.0579 -5.1641 -1.5023 20 1 8.3519 -4.7717 -2.1835 21 1 7.3054 -3.3144 -0.5520 22 6 3.2688 -0.6719 -2.0999 23 6 2.9056 -2.1645 -1.9596 24 6 2.3047 -2.5398 -3.3379 25 6 3.1892 -1.7399 -4.3263 26 6 3.4487 -0.4017 -3.6041 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2129 2.3204 0.0103 31 1 0.9042 5.1747 -1.0284 32 1 1.6519 5.6585 0.5127 33 1 0.1576 4.6914 0.5135 34 1 4.1514 5.3429 1.0251 35 1 4.9439 4.9379 -0.5166 36 1 3.3579 5.7460 -0.5163 37 1 5.1344 2.5752 -0.0006 38 1 5.1981 0.2039 0.5134 39 1 3.7067 -0.7678 0.5148 40 1 6.3440 -1.3087 -0.8932 41 1 4.9402 -2.4014 -0.9514 42 1 7.2791 -4.0977 -4.6129 43 1 2.4640 -0.0529 -1.7030 44 1 3.7982 -2.7571 -1.7587 45 1 2.1676 -2.3050 -1.1699 46 1 1.2648 -2.2206 -3.4050 47 1 2.3914 -3.6107 -3.5218 48 1 2.6580 -1.5711 -5.2630 49 1 4.1280 -2.2624 -4.5101 50 1 2.7308 0.3478 -3.9373 51 1 4.4645 -0.0603 -3.8032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238763180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:32 Heat of formation + Delta-G solvation = -11.432677 kcal Electronic energy + Delta-G solvation = -28778.436117 eV Core-core repulsion = 25256.853733 eV Total energy + Delta-G solvation = -3521.582384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.59836 -39.99835 -38.77295 -36.15770 -34.73122 -33.62157 -32.61687 -30.29068 -29.54652 -29.05333 -28.72154 -27.69893 -26.47305 -24.55548 -23.25696 -22.80545 -21.31763 -21.12035 -19.88640 -19.06930 -18.20612 -17.50568 -17.23767 -16.77914 -16.20247 -16.01331 -15.70398 -15.35401 -15.14053 -15.01372 -14.86881 -14.82463 -14.45516 -14.01692 -13.91836 -13.53851 -13.47921 -13.28461 -12.99513 -12.89069 -12.81921 -12.67009 -12.59306 -12.45390 -12.16901 -12.05701 -11.88662 -11.80520 -11.69027 -11.67836 -11.53452 -11.42982 -11.03015 -10.99488 -10.59937 -10.57783 -9.59780 -8.91359 -8.71883 -8.10674 -6.08243 0.42072 0.54656 1.32945 1.37057 1.44763 2.42296 2.45278 2.74707 3.21312 3.46415 3.81248 3.90819 4.01643 4.03630 4.06164 4.24044 4.29830 4.33016 4.40672 4.42547 4.53433 4.59806 4.69642 4.73383 4.77022 4.82568 4.83350 4.85723 4.89172 4.89631 4.92668 4.94507 4.99952 5.03836 5.06675 5.17399 5.19342 5.21968 5.25922 5.36725 5.39817 5.48043 5.54935 5.63727 5.68444 5.76213 5.80431 5.92286 6.01363 6.22954 6.53758 6.59159 6.82585 7.02995 7.52090 9.02386 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.004466 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.484253 B = 6267.815792 C = 6860.553859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.119 3.881 4 C -0.210 4.210 5 C -0.057 4.057 6 C -0.112 4.112 7 C -0.133 4.133 8 C -0.106 4.106 9 C -0.073 4.073 10 C -0.123 4.123 11 C 0.101 3.899 12 N -0.526 5.526 13 C 0.163 3.837 14 C -0.497 4.497 15 H 0.088 0.912 16 C 0.022 3.978 17 N -0.941 5.941 18 Si 0.913 3.087 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.259 1.259 22 C 0.101 3.899 23 C -0.152 4.152 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.101 4.101 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.013 0.987 41 H -0.007 1.007 42 H 0.260 0.740 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.050 0.950 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 14.369 11.090 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.074 3.926 4 C -0.228 4.228 5 C -0.058 4.058 6 C -0.168 4.168 7 C -0.133 4.133 8 C -0.163 4.163 9 C -0.091 4.091 10 C -0.124 4.124 11 C -0.026 4.026 12 N -0.249 5.249 13 C 0.036 3.964 14 C -0.536 4.536 15 H 0.105 0.895 16 C -0.175 4.175 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.183 1.183 22 C -0.008 4.008 23 C -0.191 4.191 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.138 4.138 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.164 0.836 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.011 0.989 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.069 0.931 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.798 14.449 10.771 23.319 hybrid contribution 0.350 -1.869 0.625 2.002 sum -14.448 12.579 11.397 22.291 Atomic orbital electron populations 1.23266 0.77110 1.04991 1.02122 1.86164 1.22901 1.26912 1.88371 1.18879 0.91628 0.84959 0.97177 1.21254 1.00566 0.91280 1.09699 1.19896 0.93381 0.95558 0.96942 1.20872 0.99269 0.93512 1.03159 1.19948 0.93426 0.95991 1.03956 1.20765 1.00221 0.92458 1.02822 1.20862 1.00005 0.90732 0.97544 1.19172 0.90881 0.95454 1.06905 1.20808 0.97802 0.93525 0.90478 1.62297 1.13867 1.36365 1.12332 1.20153 0.91349 0.88160 0.96732 1.21758 1.30929 1.08165 0.92701 0.89469 1.25452 0.96640 0.98934 0.96487 1.69989 1.41817 1.27604 1.18936 0.86219 0.78016 0.80123 0.81647 1.20153 1.21484 1.18342 1.22212 0.90576 0.94450 0.93519 1.23042 1.00427 0.98562 0.97043 1.22222 0.98352 0.98621 0.94893 1.22424 1.00140 0.96607 0.97028 1.22162 1.00212 0.96388 0.95077 0.91383 0.91965 0.87316 0.83555 0.90315 0.89977 0.90486 0.90372 0.91911 0.90163 0.85650 0.91016 0.95340 0.96867 0.98923 0.93126 0.89172 0.91437 0.92467 0.90823 0.93435 0.92846 0.91874 0.93145 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.25 7.49 -92.43 -0.69 -9.95 16 3 C 0.12 3.43 5.37 22.51 0.12 3.55 16 4 C -0.21 -4.86 8.69 22.37 0.19 -4.67 16 5 C -0.06 -1.24 5.88 -19.88 -0.12 -1.36 16 6 C -0.11 -1.54 9.19 71.24 0.65 -0.88 16 7 C -0.13 -3.16 5.88 -19.85 -0.12 -3.28 16 8 C -0.11 -1.84 9.19 71.24 0.65 -1.19 16 9 C -0.07 -2.12 9.35 22.25 0.21 -1.91 16 10 C -0.12 -3.98 4.89 -19.77 -0.10 -4.07 16 11 C 0.10 3.75 4.97 85.56 0.43 4.18 16 12 N -0.53 -22.59 4.41 -875.85 -3.86 -26.45 16 13 C 0.16 7.94 3.27 85.56 0.28 8.22 16 14 C -0.50 -27.47 6.23 25.60 0.16 -27.31 16 15 H 0.09 5.15 3.51 -2.91 -0.01 5.14 16 16 C 0.02 1.24 5.46 84.65 0.46 1.70 16 17 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 18 Si 0.91 44.79 27.36 68.60 1.88 46.67 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.26 -12.18 6.71 99.48 0.67 -11.51 16 22 C 0.10 4.05 2.45 45.64 0.11 4.16 16 23 C -0.15 -6.17 5.75 31.69 0.18 -5.98 16 24 C -0.10 -3.92 6.91 31.91 0.22 -3.69 16 25 C -0.12 -5.33 6.18 31.67 0.20 -5.13 16 26 C -0.10 -4.26 5.64 31.32 0.18 -4.08 16 27 H 0.07 0.98 7.65 -2.38 -0.02 0.96 16 28 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.15 2.58 6.30 -2.91 -0.02 2.57 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.93 6.70 -2.39 -0.02 0.91 16 33 H 0.08 0.85 8.08 -2.39 -0.02 0.84 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.06 1.13 8.08 -2.38 -0.02 1.11 16 36 H 0.08 1.12 6.69 -2.39 -0.02 1.10 16 37 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.07 2.57 8.05 -2.38 -0.02 2.55 16 39 H 0.03 1.08 7.53 -2.39 -0.02 1.06 16 40 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 41 H -0.01 -0.32 4.89 -2.38 -0.01 -0.33 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.09 3.38 3.64 -2.38 -0.01 3.37 16 44 H 0.07 3.19 4.14 -2.38 -0.01 3.18 16 45 H 0.06 2.09 8.01 -2.39 -0.02 2.07 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.06 3.32 5.97 -2.39 -0.01 3.30 16 50 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.05 2.68 5.78 -2.39 -0.01 2.67 16 Total: -1.00 -66.10 372.90 3.33 -62.77 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.88 Total: 24.41 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 4.83 Total: -40.29 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -3.56 Total: -83.61 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.69 Total: -9.95 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -66.10 3.33 -62.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238763180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.333 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds