Wall clock time and date at job start Tue Mar 31 2020 12:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99453 * 2 1 4 4 C 1.53006 * 109.47144 * 125.00318 * 3 2 1 5 5 C 1.52997 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46781 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47125 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47165 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46881 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46937 * 55.00501 * 9 8 7 11 11 O 1.42902 * 109.47322 * 294.99930 * 9 8 7 12 12 C 1.53003 * 109.46797 * 174.99827 * 9 8 7 13 13 N 1.46496 * 109.46801 * 184.99938 * 12 9 8 14 14 C 1.38733 * 119.99740 * 180.02562 * 13 12 9 15 15 C 1.38750 * 120.29613 * 359.97438 * 14 13 12 16 16 C 1.38166 * 120.02714 * 180.25780 * 15 14 13 17 17 C 1.38903 * 120.62202 * 359.44050 * 16 15 14 18 18 C 1.36444 * 120.59967 * 0.56670 * 17 16 15 19 19 C 1.40728 * 119.95253 * 359.71857 * 18 17 16 20 20 C 1.41044 * 120.31017 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00016 * 149.64502 * 20 19 18 22 22 C 1.39927 * 119.99776 * 329.65372 * 20 19 18 23 23 N 1.30877 * 120.00194 * 162.16510 * 22 20 19 24 24 Si 1.86801 * 119.99976 * 342.16176 * 22 20 19 25 25 H 1.48507 * 109.47106 * 95.39131 * 24 22 20 26 26 H 1.48499 * 109.47091 * 215.39056 * 24 22 20 27 27 H 1.48499 * 109.47236 * 335.39077 * 24 22 20 28 28 H 1.07997 * 119.99921 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00243 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.00438 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47578 * 5.00242 * 3 2 1 32 32 H 1.09000 * 109.47357 * 244.99908 * 3 2 1 33 33 H 1.09003 * 109.46966 * 59.99744 * 4 3 2 34 34 H 1.08994 * 109.46962 * 300.00329 * 4 3 2 35 35 H 1.08991 * 109.47302 * 60.00595 * 5 4 3 36 36 H 1.08998 * 109.47055 * 299.99777 * 5 4 3 37 37 H 1.08993 * 109.47456 * 59.99708 * 6 5 4 38 38 H 1.09007 * 109.46819 * 300.00095 * 6 5 4 39 39 H 1.09003 * 109.47126 * 59.99561 * 7 6 5 40 40 H 1.09001 * 109.47338 * 300.00134 * 7 6 5 41 41 H 1.08991 * 109.46722 * 60.00068 * 8 7 6 42 42 H 1.08998 * 109.47099 * 299.99578 * 8 7 6 43 43 H 0.96699 * 113.99678 * 300.00174 * 11 9 8 44 44 H 1.09000 * 109.46936 * 65.00198 * 12 9 8 45 45 H 1.08998 * 109.47246 * 305.00191 * 12 9 8 46 46 H 0.96996 * 120.00674 * 0.02562 * 13 12 9 47 47 H 1.07999 * 119.98587 * 359.97438 * 15 14 13 48 48 H 1.07996 * 119.68348 * 179.73105 * 16 15 14 49 49 H 1.08002 * 119.69698 * 180.27897 * 17 16 15 50 50 H 1.08002 * 120.02163 * 179.73656 * 18 17 16 51 51 H 0.96995 * 120.00595 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8003 2.6580 1.1813 6 6 4.7724 2.6857 2.3625 7 6 5.5373 4.0107 2.3626 8 6 6.5089 4.0387 3.5442 9 6 7.2742 5.3636 3.5439 10 1 6.5661 6.1922 3.5438 11 8 8.0958 5.4388 2.3770 12 6 8.1539 5.4447 4.7931 13 7 8.7947 6.7606 4.8545 14 6 9.6454 7.0695 5.9059 15 6 9.8931 6.1369 6.9030 16 6 10.7372 6.4523 7.9504 17 6 11.3539 7.6953 8.0124 18 6 11.1284 8.6316 7.0459 19 6 10.2686 8.3387 5.9710 20 6 10.0304 9.3007 4.9674 21 1 9.8141 8.9853 3.9575 22 6 10.0747 10.6639 5.2804 23 7 10.2043 11.5505 4.3264 24 14 9.9487 11.2182 7.0598 25 1 11.3120 11.4177 7.6138 26 1 9.1948 12.4957 7.1280 27 1 9.2392 10.1818 7.8521 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8501 -0.9352 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4028 -0.9314 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2356 2.1130 35 1 3.0957 3.4847 1.2707 36 1 4.3581 2.7551 0.2499 37 1 5.4770 1.8590 2.2728 38 1 4.2149 2.5883 3.2942 39 1 4.8323 4.8372 2.4526 40 1 6.0947 4.1086 1.4310 41 1 7.2138 3.2123 3.4545 42 1 5.9511 3.9412 4.4756 43 1 8.7510 4.7307 2.3111 44 1 8.9190 4.6696 4.7496 45 1 7.5386 5.2984 5.6809 46 1 8.6243 7.4160 4.1600 47 1 9.4225 5.1657 6.8627 48 1 10.9227 5.7238 8.7258 49 1 12.0144 7.9244 8.8357 50 1 11.6095 9.5967 7.1056 51 1 10.2347 12.4954 4.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253244307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:03 Heat of formation + Delta-G solvation = -51.201113 kcal Electronic energy + Delta-G solvation = -25126.106741 eV Core-core repulsion = 21602.799869 eV Total energy + Delta-G solvation = -3523.306872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.67869 -37.78212 -36.99327 -35.00252 -34.14348 -33.44531 -32.41686 -30.47039 -29.90440 -28.34506 -26.54685 -24.87741 -24.10299 -22.24310 -21.32365 -21.23695 -20.65455 -20.06389 -19.94113 -17.29238 -16.62139 -16.44478 -16.20152 -15.95539 -15.37159 -14.91381 -14.71790 -14.44679 -14.13002 -13.98412 -13.76751 -13.26485 -13.20471 -13.07529 -12.78743 -12.59705 -12.45891 -12.31398 -11.98742 -11.86866 -11.68799 -11.53225 -11.46811 -11.25080 -10.98462 -10.89489 -10.82147 -10.77178 -10.67556 -10.64872 -10.27850 -9.86640 -9.69288 -9.63620 -9.56060 -9.03573 -8.97857 -7.55167 -6.79634 -6.43450 -4.20468 1.88118 2.72413 2.88502 3.20747 3.31493 3.42239 4.09016 4.11120 4.36122 4.56244 4.57152 4.64904 4.66917 4.73398 4.86971 4.90276 4.95053 5.10146 5.15191 5.26413 5.33392 5.40387 5.45861 5.50041 5.52525 5.60456 5.62045 5.73778 5.78531 5.80438 5.85019 5.91051 6.00785 6.08982 6.09689 6.21200 6.22622 6.23716 6.28302 6.37302 6.42195 6.73303 6.94974 7.17493 7.31834 7.50774 7.72154 7.73763 7.97735 8.13655 8.27457 8.50296 8.81808 8.88305 9.00599 10.23887 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.001857 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.900053 B =15071.033555 C =15820.277897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.097 4.097 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.147 4.147 9 C 0.096 3.904 10 H 0.102 0.898 11 O -0.554 6.554 12 C 0.105 3.895 13 N -0.741 5.741 14 C 0.131 3.869 15 C -0.175 4.175 16 C -0.196 4.196 17 C -0.126 4.126 18 C -0.212 4.212 19 C 0.051 3.949 20 C -0.452 4.452 21 H 0.086 0.914 22 C 0.085 3.915 23 N -0.820 5.820 24 Si 0.910 3.090 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.246 1.246 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.372 0.628 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.403 0.597 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.842 -18.475 -5.801 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.186 4.186 9 C 0.037 3.963 10 H 0.120 0.880 11 O -0.359 6.359 12 C -0.021 4.021 13 N -0.375 5.375 14 C 0.031 3.969 15 C -0.198 4.198 16 C -0.216 4.216 17 C -0.146 4.146 18 C -0.233 4.233 19 C 0.046 3.954 20 C -0.482 4.482 21 H 0.104 0.896 22 C -0.132 4.132 23 N -0.446 5.446 24 Si 0.737 3.263 25 H -0.199 1.199 26 H -0.223 1.223 27 H -0.169 1.169 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.240 0.760 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.116 0.884 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.268 -17.860 -6.029 23.642 hybrid contribution 0.248 0.046 0.719 0.762 sum -14.021 -17.814 -5.310 23.284 Atomic orbital electron populations 1.23865 0.96029 1.01805 1.01860 1.23013 0.96061 0.98668 0.99315 1.20813 0.98316 0.95202 0.99113 1.21553 0.97717 0.97967 0.98035 1.21621 0.98132 0.97255 0.98848 1.21610 0.97967 0.97836 0.98288 1.21525 0.97770 0.97199 0.98821 1.22232 0.99065 0.97751 0.99516 1.22177 0.91770 0.97759 0.84622 0.88033 1.86619 1.51287 1.54646 1.43355 1.21754 0.95544 0.87594 0.97239 1.43930 1.51590 1.14441 1.27571 1.17872 0.94114 0.95063 0.89861 1.20099 1.04820 0.97728 0.97190 1.20135 1.04418 0.97148 0.99863 1.20158 1.01211 0.94598 0.98641 1.20507 1.04140 0.99377 0.99244 1.17387 0.92636 0.91642 0.93770 1.19091 1.42736 0.89603 0.96772 0.89564 1.26031 0.91157 0.96547 0.99476 1.69720 1.36574 1.03140 1.35171 0.86326 0.79069 0.77671 0.83237 1.19944 1.22289 1.16935 0.88642 0.88627 0.87510 0.91533 0.90990 0.91942 0.91968 0.91981 0.91912 0.92147 0.92164 0.92010 0.91256 0.91562 0.90949 0.78121 0.93452 0.92895 0.76041 0.89047 0.89239 0.89399 0.88387 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 14.32 29.01 0.42 -0.80 16 2 C -0.15 -0.97 9.52 -36.03 -0.34 -1.31 16 3 C -0.10 -0.62 5.66 -27.88 -0.16 -0.77 16 4 C -0.12 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -0.86 5.22 -26.73 -0.14 -1.00 16 6 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 7 C -0.12 -1.04 5.11 -26.73 -0.14 -1.17 16 8 C -0.15 -1.39 4.89 -26.73 -0.13 -1.52 16 9 C 0.10 1.20 3.00 -26.73 -0.08 1.12 16 10 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 11 O -0.55 -7.49 12.82 -35.23 -0.45 -7.94 16 12 C 0.10 1.57 4.54 -4.04 -0.02 1.55 16 13 N -0.74 -14.77 5.58 -58.20 -0.32 -15.09 16 14 C 0.13 3.04 6.68 -83.29 -0.56 2.49 16 15 C -0.17 -3.75 9.30 -39.42 -0.37 -4.12 16 16 C -0.20 -4.21 10.04 -39.36 -0.40 -4.60 16 17 C -0.13 -2.87 9.96 -39.98 -0.40 -3.27 16 18 C -0.21 -5.31 7.11 -39.29 -0.28 -5.59 16 19 C 0.05 1.30 5.11 -106.63 -0.54 0.76 16 20 C -0.45 -12.30 8.92 -37.89 -0.34 -12.64 16 21 H 0.09 2.44 7.03 -52.49 -0.37 2.07 16 22 C 0.08 2.27 5.41 -17.33 -0.09 2.18 16 23 N -0.82 -22.47 13.93 55.55 0.77 -21.70 16 24 Si 0.91 21.62 24.52 -169.99 -4.17 17.45 16 25 H -0.27 -6.35 6.72 56.52 0.38 -5.97 16 26 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.25 -6.03 6.86 56.52 0.39 -5.64 16 28 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.10 0.55 7.84 -52.48 -0.41 0.14 16 30 H 0.11 0.61 8.06 -52.49 -0.42 0.18 16 31 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.37 3.87 9.05 45.56 0.41 4.29 16 44 H 0.05 0.69 7.94 -51.93 -0.41 0.27 16 45 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 46 H 0.40 8.51 6.79 -40.82 -0.28 8.23 16 47 H 0.09 1.72 6.73 -52.49 -0.35 1.37 16 48 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 49 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 50 H 0.10 2.46 4.77 -52.49 -0.25 2.21 16 51 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -29.09 406.51 -10.28 -39.37 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -8.40 Total: 12.41 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -3.84 Total: -30.63 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.45 Total: -36.79 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.45 Total: -7.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.17 Total: 17.45 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.09 -10.28 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253244307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.828 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds