Wall clock time and date at job start Tue Mar 31 2020 12:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99453 * 2 1 4 4 C 1.53006 * 109.47144 * 125.00318 * 3 2 1 5 5 C 1.52997 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46781 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47125 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47165 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46881 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46937 * 55.00501 * 9 8 7 11 11 O 1.42902 * 109.47322 * 294.99930 * 9 8 7 12 12 C 1.53003 * 109.46797 * 174.99827 * 9 8 7 13 13 N 1.46496 * 109.46801 * 184.99938 * 12 9 8 14 14 C 1.38733 * 119.99740 * 180.02562 * 13 12 9 15 15 C 1.38750 * 120.29613 * 359.97438 * 14 13 12 16 16 C 1.38166 * 120.02714 * 180.25780 * 15 14 13 17 17 C 1.38903 * 120.62202 * 359.44050 * 16 15 14 18 18 C 1.36444 * 120.59967 * 0.56670 * 17 16 15 19 19 C 1.40728 * 119.95253 * 359.71857 * 18 17 16 20 20 C 1.41044 * 120.31017 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00016 * 149.64502 * 20 19 18 22 22 C 1.39927 * 119.99776 * 329.65372 * 20 19 18 23 23 N 1.30877 * 120.00194 * 162.16510 * 22 20 19 24 24 Si 1.86801 * 119.99976 * 342.16176 * 22 20 19 25 25 H 1.48507 * 109.47106 * 95.39131 * 24 22 20 26 26 H 1.48499 * 109.47091 * 215.39056 * 24 22 20 27 27 H 1.48499 * 109.47236 * 335.39077 * 24 22 20 28 28 H 1.07997 * 119.99921 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00243 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.00438 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47578 * 5.00242 * 3 2 1 32 32 H 1.09000 * 109.47357 * 244.99908 * 3 2 1 33 33 H 1.09003 * 109.46966 * 59.99744 * 4 3 2 34 34 H 1.08994 * 109.46962 * 300.00329 * 4 3 2 35 35 H 1.08991 * 109.47302 * 60.00595 * 5 4 3 36 36 H 1.08998 * 109.47055 * 299.99777 * 5 4 3 37 37 H 1.08993 * 109.47456 * 59.99708 * 6 5 4 38 38 H 1.09007 * 109.46819 * 300.00095 * 6 5 4 39 39 H 1.09003 * 109.47126 * 59.99561 * 7 6 5 40 40 H 1.09001 * 109.47338 * 300.00134 * 7 6 5 41 41 H 1.08991 * 109.46722 * 60.00068 * 8 7 6 42 42 H 1.08998 * 109.47099 * 299.99578 * 8 7 6 43 43 H 0.96699 * 113.99678 * 300.00174 * 11 9 8 44 44 H 1.09000 * 109.46936 * 65.00198 * 12 9 8 45 45 H 1.08998 * 109.47246 * 305.00191 * 12 9 8 46 46 H 0.96996 * 120.00674 * 0.02562 * 13 12 9 47 47 H 1.07999 * 119.98587 * 359.97438 * 15 14 13 48 48 H 1.07996 * 119.68348 * 179.73105 * 16 15 14 49 49 H 1.08002 * 119.69698 * 180.27897 * 17 16 15 50 50 H 1.08002 * 120.02163 * 179.73656 * 18 17 16 51 51 H 0.96995 * 120.00595 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8003 2.6580 1.1813 6 6 4.7724 2.6857 2.3625 7 6 5.5373 4.0107 2.3626 8 6 6.5089 4.0387 3.5442 9 6 7.2742 5.3636 3.5439 10 1 6.5661 6.1922 3.5438 11 8 8.0958 5.4388 2.3770 12 6 8.1539 5.4447 4.7931 13 7 8.7947 6.7606 4.8545 14 6 9.6454 7.0695 5.9059 15 6 9.8931 6.1369 6.9030 16 6 10.7372 6.4523 7.9504 17 6 11.3539 7.6953 8.0124 18 6 11.1284 8.6316 7.0459 19 6 10.2686 8.3387 5.9710 20 6 10.0304 9.3007 4.9674 21 1 9.8141 8.9853 3.9575 22 6 10.0747 10.6639 5.2804 23 7 10.2043 11.5505 4.3264 24 14 9.9487 11.2182 7.0598 25 1 11.3120 11.4177 7.6138 26 1 9.1948 12.4957 7.1280 27 1 9.2392 10.1818 7.8521 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8501 -0.9352 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4028 -0.9314 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2356 2.1130 35 1 3.0957 3.4847 1.2707 36 1 4.3581 2.7551 0.2499 37 1 5.4770 1.8590 2.2728 38 1 4.2149 2.5883 3.2942 39 1 4.8323 4.8372 2.4526 40 1 6.0947 4.1086 1.4310 41 1 7.2138 3.2123 3.4545 42 1 5.9511 3.9412 4.4756 43 1 8.7510 4.7307 2.3111 44 1 8.9190 4.6696 4.7496 45 1 7.5386 5.2984 5.6809 46 1 8.6243 7.4160 4.1600 47 1 9.4225 5.1657 6.8627 48 1 10.9227 5.7238 8.7258 49 1 12.0144 7.9244 8.8357 50 1 11.6095 9.5967 7.1056 51 1 10.2347 12.4954 4.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253244307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:02 Heat of formation + Delta-G solvation = -67.287238 kcal Electronic energy + Delta-G solvation = -25126.804288 eV Core-core repulsion = 21602.799869 eV Total energy + Delta-G solvation = -3524.004419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.13714 -39.06239 -37.62730 -35.83671 -35.49149 -35.35705 -33.13971 -32.25370 -31.07790 -29.54559 -27.73056 -26.59513 -25.11531 -23.42326 -22.29708 -22.14554 -21.75656 -21.54934 -20.54958 -19.22829 -18.15697 -17.51519 -17.23782 -16.71638 -16.63730 -16.27253 -15.92358 -15.53699 -15.23734 -15.11200 -14.93342 -14.62677 -14.36949 -14.25326 -14.12452 -13.76032 -13.65197 -13.58878 -13.29077 -13.08082 -12.70605 -12.67118 -12.53390 -12.30907 -12.12778 -12.05909 -11.89460 -11.66753 -11.58635 -11.54731 -11.48800 -11.47089 -11.29599 -10.92689 -10.74971 -10.63325 -10.17194 -9.41110 -8.78039 -8.15934 -6.19460 0.88122 1.06968 1.28586 1.41125 1.44270 1.51101 2.17924 2.71899 2.85193 3.54719 3.61651 3.67160 3.90285 3.99700 4.06529 4.13841 4.17599 4.24423 4.35850 4.39759 4.46941 4.50916 4.55751 4.60742 4.70750 4.74590 4.80988 4.84672 4.87909 4.92428 4.93767 5.04111 5.08460 5.12648 5.13406 5.14902 5.23172 5.31531 5.42245 5.42801 5.45098 5.52192 5.56882 5.70890 5.76740 5.87842 5.90590 6.14117 6.25381 6.45903 6.60878 6.83959 6.91769 7.12132 7.19001 8.31307 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.001857 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.900053 B =15071.033555 C =15820.277897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.097 4.097 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.113 4.113 8 C -0.136 4.136 9 C 0.103 3.897 10 H 0.085 0.915 11 O -0.574 6.574 12 C 0.102 3.898 13 N -0.745 5.745 14 C 0.129 3.871 15 C -0.181 4.181 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.220 4.220 19 C 0.014 3.986 20 C -0.476 4.476 21 H 0.055 0.945 22 C 0.045 3.955 23 N -0.865 5.865 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.284 1.284 27 H -0.257 1.257 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.385 0.615 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.393 0.607 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.115 0.885 50 H 0.089 0.911 51 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -21.366 -3.876 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.180 4.180 3 C -0.135 4.135 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.174 4.174 9 C 0.044 3.956 10 H 0.103 0.897 11 O -0.381 6.381 12 C -0.022 4.022 13 N -0.376 5.376 14 C 0.027 3.973 15 C -0.204 4.204 16 C -0.192 4.192 17 C -0.166 4.166 18 C -0.240 4.240 19 C 0.009 3.991 20 C -0.507 4.507 21 H 0.074 0.926 22 C -0.167 4.167 23 N -0.494 5.494 24 Si 0.788 3.212 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.181 1.181 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.234 0.766 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.227 0.773 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.133 0.867 50 H 0.107 0.893 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.710 -20.790 -4.111 25.797 hybrid contribution 0.384 0.692 0.156 0.807 sum -14.326 -20.098 -3.955 24.996 Atomic orbital electron populations 1.24015 0.96132 1.02350 1.01484 1.23118 0.96285 0.98890 0.99665 1.20808 0.98284 0.95239 0.99130 1.21498 0.97667 0.97627 0.97973 1.21597 0.98007 0.97506 0.98617 1.21556 0.97972 0.97013 0.98584 1.21479 0.97534 0.97823 0.98194 1.22139 0.99061 0.96093 1.00119 1.22105 0.91148 0.99085 0.83279 0.89654 1.86597 1.51998 1.55756 1.43717 1.22036 0.96059 0.85264 0.98872 1.44183 1.51007 1.16094 1.26332 1.18164 0.93812 0.94494 0.90839 1.20497 1.04817 0.98704 0.96414 1.20685 1.01737 0.96996 0.99820 1.20495 1.02286 0.94771 0.99086 1.20657 1.03901 0.99771 0.99710 1.17564 0.94349 0.92871 0.94324 1.19037 1.44952 0.90635 0.96070 0.92650 1.26637 0.91083 0.96465 1.02476 1.69760 1.39400 1.03612 1.36596 0.85509 0.79182 0.77168 0.79321 1.19142 1.21154 1.18115 0.87755 0.88548 0.86878 0.91809 0.90894 0.91548 0.92142 0.92452 0.92145 0.91493 0.91789 0.92897 0.92224 0.90017 0.89931 0.76612 0.92058 0.91781 0.77274 0.85720 0.85367 0.86672 0.89321 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.16 -1.88 9.52 25.64 0.24 -1.63 16 3 C -0.10 -1.14 5.66 29.85 0.17 -0.97 16 4 C -0.11 -1.28 5.20 30.60 0.16 -1.12 16 5 C -0.12 -1.56 5.22 30.59 0.16 -1.40 16 6 C -0.11 -1.51 5.21 30.59 0.16 -1.35 16 7 C -0.11 -1.87 5.11 30.59 0.16 -1.71 16 8 C -0.14 -2.25 4.89 30.60 0.15 -2.10 16 9 C 0.10 2.46 3.00 30.60 0.09 2.55 16 10 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 11 O -0.57 -15.23 12.82 -148.98 -1.91 -17.14 16 12 C 0.10 2.85 4.54 86.38 0.39 3.24 16 13 N -0.74 -29.45 5.58 -338.05 -1.89 -31.34 16 14 C 0.13 5.86 6.68 38.99 0.26 6.12 16 15 C -0.18 -7.12 9.30 22.38 0.21 -6.91 16 16 C -0.17 -6.67 10.04 22.41 0.22 -6.44 16 17 C -0.15 -6.23 9.96 22.01 0.22 -6.01 16 18 C -0.22 -10.86 7.11 22.46 0.16 -10.70 16 19 C 0.01 0.72 5.11 -21.17 -0.11 0.61 16 20 C -0.48 -27.11 8.92 23.37 0.21 -26.90 16 21 H 0.06 3.37 7.03 -2.91 -0.02 3.35 16 22 C 0.05 2.52 5.41 85.24 0.46 2.98 16 23 N -0.87 -49.62 13.93 21.83 0.30 -49.32 16 24 Si 0.96 45.53 24.52 68.60 1.68 47.21 16 25 H -0.27 -12.05 6.72 99.48 0.67 -11.38 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.26 -12.44 6.86 99.48 0.68 -11.76 16 28 H 0.10 0.94 8.06 -2.91 -0.02 0.92 16 29 H 0.10 1.03 7.84 -2.91 -0.02 1.00 16 30 H 0.11 1.14 8.06 -2.92 -0.02 1.11 16 31 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.11 7.82 -2.39 -0.02 1.09 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.38 7.58 9.05 -74.06 -0.67 6.91 16 44 H 0.06 1.57 7.94 -2.39 -0.02 1.55 16 45 H 0.06 1.68 7.94 -2.39 -0.02 1.66 16 46 H 0.39 17.20 6.79 -92.71 -0.63 16.57 16 47 H 0.12 4.06 6.73 -2.91 -0.02 4.04 16 48 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 49 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 50 H 0.09 4.46 4.77 -2.91 -0.01 4.44 16 51 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 Total: -1.00 -64.05 406.51 2.00 -62.05 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -0.47 Total: 41.60 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 4.29 Total: -53.07 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.58 Total: -80.66 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.91 Total: -17.14 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.68 Total: 47.21 kcal Total: -64.05 2.00 -62.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253244307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.239 kcal (2) G-P(sol) polarization free energy of solvation -64.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds