Wall clock time and date at job start Tue Mar 31 2020 12:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00245 * 2 1 4 4 C 1.53003 * 109.47491 * 124.99977 * 3 2 1 5 5 C 1.52999 * 109.47560 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47184 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47202 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46843 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47678 * 304.99860 * 9 8 7 11 11 O 1.42907 * 109.47087 * 65.00086 * 9 8 7 12 12 C 1.53003 * 109.46877 * 184.99674 * 9 8 7 13 13 N 1.46507 * 109.47070 * 180.02562 * 12 9 8 14 14 C 1.38856 * 119.99880 * 180.02562 * 13 12 9 15 15 C 1.39568 * 119.84131 * 359.72545 * 14 13 12 16 16 C 1.36340 * 120.15804 * 179.71893 * 15 14 13 17 17 C 1.40888 * 119.83498 * 0.55728 * 16 15 14 18 18 C 1.41139 * 120.15512 * 179.69937 * 17 16 15 19 19 H 1.07998 * 119.99720 * 155.11037 * 18 17 16 20 20 C 1.39865 * 120.00013 * 335.10447 * 18 17 16 21 21 N 1.30906 * 119.99689 * 342.13312 * 20 18 17 22 22 Si 1.86797 * 120.00227 * 162.12792 * 20 18 17 23 23 H 1.48503 * 109.46823 * 94.65109 * 22 20 18 24 24 H 1.48491 * 109.47258 * 214.65390 * 22 20 18 25 25 H 1.48506 * 109.47011 * 334.65929 * 22 20 18 26 26 C 1.40882 * 119.69021 * 359.71514 * 17 16 15 27 27 C 1.36342 * 119.83622 * 0.02562 * 26 17 16 28 28 H 1.07994 * 119.99986 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99920 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46787 * 5.00338 * 3 2 1 32 32 H 1.08998 * 109.47360 * 245.00165 * 3 2 1 33 33 H 1.08997 * 109.46896 * 59.99967 * 4 3 2 34 34 H 1.09007 * 109.46769 * 300.00302 * 4 3 2 35 35 H 1.08999 * 109.47090 * 59.99403 * 5 4 3 36 36 H 1.09002 * 109.46743 * 300.00446 * 5 4 3 37 37 H 1.08997 * 109.47205 * 59.99638 * 6 5 4 38 38 H 1.08998 * 109.47039 * 299.99867 * 6 5 4 39 39 H 1.08997 * 109.47345 * 59.99724 * 7 6 5 40 40 H 1.08998 * 109.47024 * 299.99876 * 7 6 5 41 41 H 1.09003 * 109.47082 * 60.00057 * 8 7 6 42 42 H 1.08998 * 109.47057 * 299.99889 * 8 7 6 43 43 H 0.96698 * 113.99997 * 59.99824 * 11 9 8 44 44 H 1.08998 * 109.47586 * 300.00458 * 12 9 8 45 45 H 1.08996 * 109.46906 * 60.00562 * 12 9 8 46 46 H 0.96996 * 119.99763 * 0.02562 * 13 12 9 47 47 H 1.07996 * 119.92005 * 359.97438 * 15 14 13 48 48 H 1.07999 * 120.08065 * 180.27093 * 16 15 14 49 49 H 0.97003 * 119.99575 * 179.97438 * 21 20 18 50 50 H 1.08001 * 120.08648 * 179.97438 * 26 17 16 51 51 H 1.08008 * 119.91802 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7997 2.6583 1.1820 6 6 4.7717 2.6860 2.3632 7 6 5.5367 4.0110 2.3632 8 6 6.5083 4.0389 3.5449 9 6 7.2738 5.3636 3.5445 10 1 7.7599 5.5021 2.5788 11 8 6.3632 6.4400 3.7781 12 6 8.3317 5.3416 4.6496 13 7 9.0643 6.6104 4.6496 14 6 10.0812 6.8249 5.5705 15 6 10.3987 5.8318 6.4983 16 6 11.3998 6.0333 7.4017 17 6 12.1064 7.2522 7.4047 18 6 13.1396 7.4705 8.3411 19 1 13.9273 8.1759 8.1213 20 6 13.1434 6.7733 9.5536 21 7 12.0480 6.1981 9.9811 22 14 14.7114 6.6629 10.5627 23 1 14.7209 7.7425 11.5823 24 1 14.7728 5.3425 11.2392 25 1 15.8873 6.8162 9.6686 26 6 11.7765 8.2523 6.4689 27 6 10.7766 8.0349 5.5678 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5065 1.0921 34 1 2.4773 1.2356 2.1130 35 1 3.0946 3.4846 1.2717 36 1 4.3574 2.7562 0.2506 37 1 5.4768 1.8597 2.2730 38 1 4.2143 2.5879 3.2947 39 1 4.8319 4.8375 2.4532 40 1 6.0942 4.1086 1.4317 41 1 7.2132 3.2123 3.4553 42 1 5.9505 3.9414 4.4763 43 1 5.8938 6.3820 4.6215 44 1 7.8456 5.2031 5.6153 45 1 9.0262 4.5207 4.4713 46 1 8.8390 7.3005 4.0063 47 1 9.8530 4.8999 6.4980 48 1 11.6474 5.2623 8.1163 49 1 12.0507 5.7142 10.8219 50 1 12.3137 9.1892 6.4657 51 1 10.5223 8.8009 4.8501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253245023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:12 Heat of formation + Delta-G solvation = -51.731953 kcal Electronic energy + Delta-G solvation = -24554.375279 eV Core-core repulsion = 21031.045387 eV Total energy + Delta-G solvation = -3523.329891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.66579 -37.63428 -37.02532 -35.08646 -34.58073 -32.89393 -32.41268 -30.05929 -29.42843 -28.63628 -26.91834 -24.76210 -23.62200 -22.20567 -21.34749 -21.31686 -20.71417 -20.10296 -19.85498 -17.18435 -16.64185 -16.47069 -16.08397 -15.94028 -15.37367 -14.96425 -14.69966 -14.46497 -14.18997 -13.80482 -13.75053 -13.44657 -13.16443 -12.83977 -12.62389 -12.57137 -12.39503 -12.07377 -11.93079 -11.80477 -11.63759 -11.54451 -11.30281 -11.20104 -11.04627 -11.00007 -10.89803 -10.82613 -10.78545 -10.72354 -10.44592 -9.89575 -9.70571 -9.66728 -9.27069 -9.20180 -8.50877 -7.47396 -6.62209 -6.35771 -4.01153 1.85502 2.92932 3.11996 3.15847 3.21040 3.37067 4.01736 4.07148 4.30931 4.48337 4.54464 4.61208 4.69236 4.77821 4.80208 4.84142 4.91562 5.05192 5.08682 5.20368 5.29709 5.33800 5.42656 5.47162 5.52990 5.58481 5.67765 5.72662 5.76931 5.79510 5.85288 5.92913 5.95982 6.04367 6.16557 6.20530 6.22008 6.30001 6.34440 6.34501 6.95105 6.95824 7.22329 7.38093 7.56324 7.61501 7.71389 7.87137 8.17264 8.31773 8.52177 8.74474 8.83553 9.08130 9.17612 10.39353 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.001517 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.039975 B =18448.286348 C =19176.070080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.097 4.097 4 C -0.116 4.116 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.149 4.149 9 C 0.097 3.903 10 H 0.099 0.901 11 O -0.559 6.559 12 C 0.108 3.892 13 N -0.756 5.756 14 C 0.092 3.908 15 C -0.165 4.165 16 C -0.124 4.124 17 C 0.074 3.926 18 C -0.468 4.468 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.809 5.809 22 Si 0.901 3.099 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.186 4.186 27 C -0.159 4.159 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.374 0.626 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.388 0.612 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.275 0.725 50 H 0.091 0.909 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.124 -10.515 -15.443 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.187 4.187 9 C 0.038 3.962 10 H 0.117 0.883 11 O -0.364 6.364 12 C -0.018 4.018 13 N -0.393 5.393 14 C -0.005 4.005 15 C -0.187 4.187 16 C -0.144 4.144 17 C 0.071 3.929 18 C -0.499 4.499 19 H 0.090 0.910 20 C -0.140 4.140 21 N -0.436 5.436 22 Si 0.727 3.273 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.206 4.206 27 C -0.181 4.181 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.222 0.778 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.221 0.779 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.026 -10.636 -15.749 26.193 hybrid contribution 0.371 -0.173 0.967 1.050 sum -17.655 -10.809 -14.782 25.436 Atomic orbital electron populations 1.23864 0.96024 1.01812 1.01821 1.23013 0.96067 0.98670 0.99345 1.20807 0.98292 0.95217 0.99073 1.21558 0.97752 0.97952 0.98073 1.21615 0.98121 0.97291 0.98761 1.21616 0.98021 0.97816 0.98357 1.21515 0.98161 0.97532 0.97981 1.22241 0.99026 0.98052 0.99425 1.22170 0.88847 0.86238 0.98939 0.88314 1.86547 1.58711 1.48010 1.43132 1.21684 0.93744 0.88689 0.97693 1.43738 1.39439 1.16735 1.39359 1.17375 0.93271 0.95703 0.94145 1.20075 1.02096 0.97505 0.99060 1.20915 0.97294 0.97780 0.98417 1.17492 0.92888 0.90505 0.92051 1.19361 1.08611 1.21752 1.00149 0.90973 1.25786 0.96633 0.93804 0.97770 1.69863 1.26725 1.27559 1.19491 0.86420 0.83001 0.78173 0.79755 1.19863 1.20311 1.18669 1.20553 1.00631 0.98486 1.00912 1.19816 1.00481 0.95581 1.02211 0.88623 0.88636 0.87492 0.91556 0.91028 0.91893 0.91931 0.91987 0.92004 0.92084 0.92075 0.91357 0.92116 0.90860 0.91422 0.77835 0.93431 0.92900 0.77904 0.89584 0.86482 0.91392 0.89052 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 14.32 29.01 0.42 -0.73 16 2 C -0.15 -0.92 9.52 -36.03 -0.34 -1.27 16 3 C -0.10 -0.57 5.66 -27.88 -0.16 -0.73 16 4 C -0.12 -0.71 5.20 -26.73 -0.14 -0.85 16 5 C -0.12 -0.78 5.21 -26.73 -0.14 -0.92 16 6 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 7 C -0.11 -0.93 5.11 -26.73 -0.14 -1.06 16 8 C -0.15 -1.32 4.89 -26.73 -0.13 -1.45 16 9 C 0.10 1.08 3.05 -26.73 -0.08 1.00 16 10 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 11 O -0.56 -6.55 12.62 -35.23 -0.44 -7.00 16 12 C 0.11 1.55 4.55 -4.04 -0.02 1.53 16 13 N -0.76 -13.41 5.59 -58.50 -0.33 -13.74 16 14 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 15 C -0.17 -3.92 9.23 -39.77 -0.37 -4.29 16 16 C -0.12 -3.29 8.63 -39.26 -0.34 -3.63 16 17 C 0.07 2.02 5.57 -106.79 -0.59 1.42 16 18 C -0.47 -12.86 9.03 -37.87 -0.34 -13.21 16 19 H 0.07 1.92 7.91 -52.49 -0.41 1.50 16 20 C 0.07 1.95 5.13 -17.34 -0.09 1.87 16 21 N -0.81 -21.68 10.98 55.54 0.61 -21.07 16 22 Si 0.90 19.37 29.60 -169.99 -5.03 14.34 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 27 C -0.16 -3.65 9.82 -39.77 -0.39 -4.05 16 28 H 0.10 0.47 8.06 -52.49 -0.42 0.04 16 29 H 0.10 0.51 7.84 -52.49 -0.41 0.10 16 30 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.37 3.50 9.05 45.56 0.41 3.92 16 44 H 0.05 0.71 7.92 -51.93 -0.41 0.30 16 45 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 46 H 0.39 6.47 8.34 -40.82 -0.34 6.13 16 47 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 48 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 49 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 50 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 51 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 414.21 15.07 6.24 6.24 Total: -1.00 -29.10 414.21 -11.42 -40.53 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -8.54 Total: 11.63 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -3.93 Total: -30.94 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.28 Total: -34.81 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.44 Total: -7.00 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.10 -11.42 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253245023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.204 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds