Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00245 * 2 1 4 4 C 1.53003 * 109.47491 * 124.99977 * 3 2 1 5 5 C 1.52999 * 109.47560 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47184 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47202 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46843 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47678 * 304.99860 * 9 8 7 11 11 O 1.42907 * 109.47087 * 65.00086 * 9 8 7 12 12 C 1.53003 * 109.46877 * 184.99674 * 9 8 7 13 13 N 1.46507 * 109.47070 * 180.02562 * 12 9 8 14 14 C 1.38856 * 119.99880 * 180.02562 * 13 12 9 15 15 C 1.39568 * 119.84131 * 359.72545 * 14 13 12 16 16 C 1.36340 * 120.15804 * 179.71893 * 15 14 13 17 17 C 1.40888 * 119.83498 * 0.55728 * 16 15 14 18 18 C 1.41139 * 120.15512 * 179.69937 * 17 16 15 19 19 H 1.07998 * 119.99720 * 155.11037 * 18 17 16 20 20 C 1.39865 * 120.00013 * 335.10447 * 18 17 16 21 21 N 1.30906 * 119.99689 * 342.13312 * 20 18 17 22 22 Si 1.86797 * 120.00227 * 162.12792 * 20 18 17 23 23 H 1.48503 * 109.46823 * 94.65109 * 22 20 18 24 24 H 1.48491 * 109.47258 * 214.65390 * 22 20 18 25 25 H 1.48506 * 109.47011 * 334.65929 * 22 20 18 26 26 C 1.40882 * 119.69021 * 359.71514 * 17 16 15 27 27 C 1.36342 * 119.83622 * 0.02562 * 26 17 16 28 28 H 1.07994 * 119.99986 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99920 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46787 * 5.00338 * 3 2 1 32 32 H 1.08998 * 109.47360 * 245.00165 * 3 2 1 33 33 H 1.08997 * 109.46896 * 59.99967 * 4 3 2 34 34 H 1.09007 * 109.46769 * 300.00302 * 4 3 2 35 35 H 1.08999 * 109.47090 * 59.99403 * 5 4 3 36 36 H 1.09002 * 109.46743 * 300.00446 * 5 4 3 37 37 H 1.08997 * 109.47205 * 59.99638 * 6 5 4 38 38 H 1.08998 * 109.47039 * 299.99867 * 6 5 4 39 39 H 1.08997 * 109.47345 * 59.99724 * 7 6 5 40 40 H 1.08998 * 109.47024 * 299.99876 * 7 6 5 41 41 H 1.09003 * 109.47082 * 60.00057 * 8 7 6 42 42 H 1.08998 * 109.47057 * 299.99889 * 8 7 6 43 43 H 0.96698 * 113.99997 * 59.99824 * 11 9 8 44 44 H 1.08998 * 109.47586 * 300.00458 * 12 9 8 45 45 H 1.08996 * 109.46906 * 60.00562 * 12 9 8 46 46 H 0.96996 * 119.99763 * 0.02562 * 13 12 9 47 47 H 1.07996 * 119.92005 * 359.97438 * 15 14 13 48 48 H 1.07999 * 120.08065 * 180.27093 * 16 15 14 49 49 H 0.97003 * 119.99575 * 179.97438 * 21 20 18 50 50 H 1.08001 * 120.08648 * 179.97438 * 26 17 16 51 51 H 1.08008 * 119.91802 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7997 2.6583 1.1820 6 6 4.7717 2.6860 2.3632 7 6 5.5367 4.0110 2.3632 8 6 6.5083 4.0389 3.5449 9 6 7.2738 5.3636 3.5445 10 1 7.7599 5.5021 2.5788 11 8 6.3632 6.4400 3.7781 12 6 8.3317 5.3416 4.6496 13 7 9.0643 6.6104 4.6496 14 6 10.0812 6.8249 5.5705 15 6 10.3987 5.8318 6.4983 16 6 11.3998 6.0333 7.4017 17 6 12.1064 7.2522 7.4047 18 6 13.1396 7.4705 8.3411 19 1 13.9273 8.1759 8.1213 20 6 13.1434 6.7733 9.5536 21 7 12.0480 6.1981 9.9811 22 14 14.7114 6.6629 10.5627 23 1 14.7209 7.7425 11.5823 24 1 14.7728 5.3425 11.2392 25 1 15.8873 6.8162 9.6686 26 6 11.7765 8.2523 6.4689 27 6 10.7766 8.0349 5.5678 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5065 1.0921 34 1 2.4773 1.2356 2.1130 35 1 3.0946 3.4846 1.2717 36 1 4.3574 2.7562 0.2506 37 1 5.4768 1.8597 2.2730 38 1 4.2143 2.5879 3.2947 39 1 4.8319 4.8375 2.4532 40 1 6.0942 4.1086 1.4317 41 1 7.2132 3.2123 3.4553 42 1 5.9505 3.9414 4.4763 43 1 5.8938 6.3820 4.6215 44 1 7.8456 5.2031 5.6153 45 1 9.0262 4.5207 4.4713 46 1 8.8390 7.3005 4.0063 47 1 9.8530 4.8999 6.4980 48 1 11.6474 5.2623 8.1163 49 1 12.0507 5.7142 10.8219 50 1 12.3137 9.1892 6.4657 51 1 10.5223 8.8009 4.8501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253245023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -66.392193 kcal Electronic energy + Delta-G solvation = -24555.010994 eV Core-core repulsion = 21031.045387 eV Total energy + Delta-G solvation = -3523.965607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.99235 -39.01361 -37.63424 -36.34088 -35.56372 -34.59958 -33.10963 -31.37250 -31.24021 -29.92871 -28.02447 -26.11903 -24.87444 -23.37948 -22.48915 -22.07028 -21.76107 -21.52832 -20.54866 -19.15068 -17.95187 -17.34576 -17.19792 -16.80174 -16.67710 -16.03806 -15.93932 -15.57254 -15.25458 -14.94384 -14.64706 -14.38684 -14.36861 -14.21710 -13.90229 -13.78384 -13.63872 -13.43955 -13.13730 -12.94673 -12.72619 -12.63278 -12.57297 -12.33996 -12.25589 -12.09857 -11.89101 -11.65193 -11.59869 -11.58276 -11.44823 -11.30968 -11.17429 -11.06088 -10.74966 -10.29765 -10.17130 -9.41023 -8.54781 -8.15552 -6.00456 1.10754 1.18204 1.40433 1.41068 1.52935 1.59459 2.27922 2.81424 2.85625 3.56697 3.65853 3.85028 3.90487 4.00420 4.09118 4.10557 4.17247 4.26951 4.38435 4.44246 4.48257 4.50820 4.55915 4.60391 4.75399 4.79511 4.85910 4.87530 4.95927 5.01743 5.03220 5.10041 5.11536 5.14947 5.15521 5.22911 5.28035 5.32370 5.42457 5.45826 5.52395 5.57031 5.68948 5.76925 5.79865 5.90396 5.96217 6.18879 6.39369 6.67211 6.79918 6.88215 7.08694 7.15676 7.32035 8.48732 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.001517 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.039975 B =18448.286348 C =19176.070080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.096 4.096 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.143 4.143 9 C 0.111 3.889 10 H 0.100 0.900 11 O -0.569 6.569 12 C 0.104 3.896 13 N -0.747 5.747 14 C 0.111 3.889 15 C -0.175 4.175 16 C -0.142 4.142 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.067 0.933 20 C 0.033 3.967 21 N -0.842 5.842 22 Si 0.976 3.024 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.261 1.261 26 C -0.195 4.195 27 C -0.167 4.167 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.385 0.615 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.396 0.604 47 H 0.105 0.895 48 H 0.099 0.901 49 H 0.282 0.718 50 H 0.096 0.904 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.053 -11.075 -16.420 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.181 4.181 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.146 4.146 8 C -0.181 4.181 9 C 0.051 3.949 10 H 0.118 0.882 11 O -0.376 6.376 12 C -0.022 4.022 13 N -0.382 5.382 14 C 0.011 3.989 15 C -0.197 4.197 16 C -0.162 4.162 17 C 0.031 3.969 18 C -0.538 4.538 19 H 0.085 0.915 20 C -0.179 4.179 21 N -0.471 5.471 22 Si 0.797 3.203 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.185 1.185 26 C -0.215 4.215 27 C -0.189 4.189 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.234 0.766 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.231 0.769 47 H 0.123 0.877 48 H 0.117 0.883 49 H 0.092 0.908 50 H 0.114 0.886 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.999 -11.198 -16.759 27.698 hybrid contribution 0.497 0.010 1.128 1.233 sum -18.502 -11.188 -15.631 26.679 Atomic orbital electron populations 1.24012 0.96118 1.02359 1.01451 1.23126 0.96311 0.98944 0.99699 1.20797 0.98245 0.95180 0.99079 1.21513 0.97707 0.97769 0.97977 1.21582 0.97972 0.97407 0.98546 1.21578 0.98038 0.97266 0.98601 1.21453 0.97840 0.97834 0.97522 1.22182 0.99053 0.96750 1.00106 1.22048 0.88065 0.87326 0.97434 0.88246 1.86529 1.58736 1.48362 1.44008 1.21914 0.94293 0.86928 0.99039 1.43815 1.38133 1.18241 1.38037 1.17495 0.93123 0.94690 0.93596 1.20231 1.01720 0.98820 0.98925 1.20850 0.98733 0.97388 0.99251 1.17823 0.94080 0.91576 0.93394 1.19593 1.09322 1.23418 1.01511 0.91464 1.26601 0.99852 0.92981 0.98463 1.69922 1.28595 1.28285 1.20255 0.85298 0.78392 0.78614 0.77974 1.19020 1.19231 1.18536 1.20758 1.01340 0.98360 1.01059 1.20104 0.99855 0.96696 1.02282 0.87875 0.88414 0.87061 0.91638 0.90773 0.91780 0.92330 0.92165 0.91889 0.91911 0.92101 0.91951 0.92175 0.90367 0.90870 0.76634 0.93599 0.92858 0.76916 0.87676 0.88325 0.90758 0.88561 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.32 67.78 0.97 -1.16 16 2 C -0.16 -1.80 9.52 25.64 0.24 -1.55 16 3 C -0.10 -1.02 5.66 29.85 0.17 -0.85 16 4 C -0.11 -1.22 5.20 30.59 0.16 -1.06 16 5 C -0.12 -1.34 5.21 30.59 0.16 -1.18 16 6 C -0.12 -1.45 5.21 30.59 0.16 -1.29 16 7 C -0.11 -1.53 5.11 30.60 0.16 -1.38 16 8 C -0.14 -2.18 4.89 30.59 0.15 -2.03 16 9 C 0.11 2.18 3.05 30.59 0.09 2.27 16 10 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 11 O -0.57 -11.94 12.62 -148.98 -1.88 -13.82 16 12 C 0.10 2.74 4.55 86.38 0.39 3.13 16 13 N -0.75 -24.77 5.59 -338.98 -1.90 -26.66 16 14 C 0.11 4.76 6.67 38.67 0.26 5.02 16 15 C -0.17 -8.24 9.23 22.15 0.20 -8.04 16 16 C -0.14 -7.74 8.63 22.48 0.19 -7.55 16 17 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 18 C -0.51 -28.87 9.03 23.38 0.21 -28.66 16 19 H 0.07 3.72 7.91 -2.91 -0.02 3.69 16 20 C 0.03 1.74 5.13 85.22 0.44 2.18 16 21 N -0.84 -46.30 10.98 21.82 0.24 -46.06 16 22 Si 0.98 40.34 29.60 68.60 2.03 42.37 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 26 C -0.20 -9.96 9.74 22.47 0.22 -9.74 16 27 C -0.17 -7.51 9.82 22.15 0.22 -7.29 16 28 H 0.10 0.89 8.06 -2.91 -0.02 0.87 16 29 H 0.10 0.95 7.84 -2.91 -0.02 0.93 16 30 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.06 0.70 7.79 -2.39 -0.02 0.68 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.38 6.28 9.05 -74.06 -0.67 5.61 16 44 H 0.05 1.26 7.92 -2.39 -0.02 1.25 16 45 H 0.05 1.45 7.94 -2.39 -0.02 1.43 16 46 H 0.40 12.09 8.34 -92.71 -0.77 11.32 16 47 H 0.11 4.44 6.68 -2.91 -0.02 4.42 16 48 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 49 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 50 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 51 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -63.21 414.21 2.21 -61.00 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.56 Total: 40.55 kcal Atomic # 6 Polarization: -61.65 SS G_CDS: 4.28 Total: -57.37 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -1.66 Total: -72.72 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -1.88 Total: -13.82 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -63.21 2.21 -61.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253245023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.395 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds