Wall clock time and date at job start Tue Mar 31 2020 12:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99758 * 2 1 4 4 C 1.52995 * 109.47428 * 125.00008 * 3 2 1 5 5 C 1.53005 * 109.47334 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46878 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46878 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47093 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47093 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47005 * 54.99957 * 9 8 7 11 11 O 1.42898 * 109.47034 * 295.00117 * 9 8 7 12 12 C 1.52997 * 109.46836 * 175.00196 * 9 8 7 13 13 N 1.46502 * 109.46825 * 184.99939 * 12 9 8 14 14 C 1.39679 * 120.00103 * 179.97438 * 13 12 9 15 15 C 1.39341 * 119.95127 * 359.73060 * 14 13 12 16 16 C 1.38476 * 120.42186 * 179.72161 * 15 14 13 17 17 C 1.37690 * 120.32900 * 0.54775 * 16 15 14 18 18 C 1.40754 * 119.88784 * 359.73127 * 17 16 15 19 19 C 1.41406 * 120.20389 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00219 * 204.44335 * 19 18 17 21 21 C 1.39939 * 120.00144 * 24.44676 * 19 18 17 22 22 N 1.30827 * 119.99892 * 17.89547 * 21 19 18 23 23 Si 1.86801 * 119.99977 * 197.89264 * 21 19 18 24 24 H 1.48503 * 109.46831 * 89.99677 * 23 21 19 25 25 H 1.48497 * 109.47135 * 209.99701 * 23 21 19 26 26 H 1.48501 * 109.46937 * 330.00193 * 23 21 19 27 27 C 1.38279 * 119.95465 * 180.02562 * 14 13 12 28 28 H 1.07994 * 120.00159 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99963 * 0.02562 * 1 2 3 30 30 H 1.07992 * 119.99908 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47551 * 4.99738 * 3 2 1 32 32 H 1.09008 * 109.46969 * 244.99705 * 3 2 1 33 33 H 1.08999 * 109.47457 * 59.99601 * 4 3 2 34 34 H 1.09000 * 109.47260 * 299.99418 * 4 3 2 35 35 H 1.09000 * 109.46594 * 60.00037 * 5 4 3 36 36 H 1.09000 * 109.46931 * 299.99305 * 5 4 3 37 37 H 1.08999 * 109.47691 * 60.00070 * 6 5 4 38 38 H 1.08999 * 109.47023 * 299.99874 * 6 5 4 39 39 H 1.09000 * 109.46744 * 300.00059 * 7 6 5 40 40 H 1.08999 * 109.46903 * 59.99587 * 7 6 5 41 41 H 1.08999 * 109.47148 * 300.00082 * 8 7 6 42 42 H 1.08999 * 109.46871 * 59.99922 * 8 7 6 43 43 H 0.96700 * 113.99960 * 300.00484 * 11 9 8 44 44 H 1.08998 * 109.47438 * 304.99512 * 12 9 8 45 45 H 1.09001 * 109.47167 * 65.00095 * 12 9 8 46 46 H 0.97001 * 120.00293 * 359.97438 * 13 12 9 47 47 H 1.07994 * 119.78661 * 359.97438 * 15 14 13 48 48 H 1.08008 * 119.83827 * 180.27367 * 16 15 14 49 49 H 1.07994 * 120.05526 * 179.74552 * 17 16 15 50 50 H 0.97002 * 120.00070 * 180.02562 * 22 21 19 51 51 H 1.07996 * 120.16035 * 359.97143 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6581 1.1812 6 6 4.7724 2.6858 2.3625 7 6 5.5373 4.0109 2.3624 8 6 6.5089 4.0389 3.5440 9 6 7.2734 5.3643 3.5444 10 1 6.5648 6.1924 3.5446 11 8 8.0948 5.4406 2.3776 12 6 8.1530 5.4453 4.7936 13 7 8.7930 6.7616 4.8557 14 6 9.6485 7.0730 5.9150 15 6 9.8881 6.1329 6.9152 16 6 10.7389 6.4293 7.9667 17 6 11.3491 7.6613 8.0414 18 6 11.1121 8.6231 7.0415 19 6 11.7357 9.8904 7.1112 20 1 11.2892 10.7400 6.6161 21 6 12.9315 10.0436 7.8218 22 7 13.6541 8.9946 8.1203 23 14 13.4959 11.7460 8.3442 24 1 12.9467 12.0588 9.6881 25 1 14.9796 11.7815 8.3952 26 1 13.0099 12.7508 7.3647 27 6 10.2516 8.3160 5.9729 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9352 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4772 1.2358 2.1130 35 1 3.0956 3.4848 1.2705 36 1 4.3583 2.7550 0.2498 37 1 5.4771 1.8591 2.2727 38 1 4.2149 2.5885 3.2940 39 1 6.0947 4.1086 1.4308 40 1 4.8324 4.8373 2.4524 41 1 5.9511 3.9414 4.4754 42 1 7.2138 3.2124 3.4544 43 1 8.7505 4.7330 2.3112 44 1 7.5378 5.2982 5.6813 45 1 8.9186 4.6707 4.7497 46 1 8.6226 7.4170 4.1611 47 1 9.4103 5.1656 6.8677 48 1 10.9214 5.6919 8.7346 49 1 12.0087 7.8892 8.8657 50 1 14.4828 9.1008 8.6132 51 1 10.0633 9.0470 5.2005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253246738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:20 Heat of formation + Delta-G solvation = -70.525152 kcal Electronic energy + Delta-G solvation = -24511.849160 eV Core-core repulsion = 20987.704334 eV Total energy + Delta-G solvation = -3524.144826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.92201 -38.96918 -37.63206 -36.34984 -35.57095 -34.72633 -33.11706 -31.69935 -31.07465 -29.37354 -27.33625 -27.13353 -24.98727 -23.18495 -22.44508 -22.08784 -21.76208 -21.66421 -20.54812 -19.13918 -17.65518 -17.33488 -17.24011 -16.67439 -16.63071 -16.32025 -15.98043 -15.68646 -15.13137 -15.05808 -14.73941 -14.48204 -14.38878 -14.19888 -13.94074 -13.76432 -13.59716 -13.37013 -13.13836 -12.85264 -12.77901 -12.65977 -12.45792 -12.31849 -12.13033 -12.08197 -11.89626 -11.71224 -11.62523 -11.57222 -11.48652 -11.29346 -11.19906 -11.06353 -10.75512 -10.47150 -10.17067 -9.34513 -8.61166 -7.93727 -6.33013 1.04459 1.34283 1.39098 1.41230 1.52236 1.59715 2.22880 2.73161 2.80183 3.52615 3.64653 3.85268 3.89996 3.99848 4.05280 4.14031 4.17019 4.24605 4.39697 4.46200 4.50400 4.55359 4.60397 4.68302 4.75246 4.81042 4.84800 4.88156 4.93144 5.04397 5.08568 5.12644 5.13012 5.13715 5.16577 5.23467 5.24354 5.31646 5.41538 5.42491 5.52381 5.57130 5.59001 5.77024 5.90582 5.94090 6.02583 6.19864 6.30916 6.62553 6.80628 6.89423 7.02223 7.05285 7.24224 8.37354 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.046684 B = 0.001449 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.632026 B =19318.342356 C =19610.434335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.110 4.110 8 C -0.140 4.140 9 C 0.108 3.892 10 H 0.096 0.904 11 O -0.572 6.572 12 C 0.102 3.898 13 N -0.750 5.750 14 C 0.232 3.768 15 C -0.304 4.304 16 C -0.074 4.074 17 C -0.233 4.233 18 C 0.113 3.887 19 C -0.504 4.504 20 H 0.071 0.929 21 C 0.037 3.963 22 N -0.823 5.823 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.260 1.260 27 C -0.315 4.315 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.386 0.614 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.395 0.605 47 H 0.113 0.887 48 H 0.109 0.891 49 H 0.097 0.903 50 H 0.287 0.713 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.204 -15.600 -12.764 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.180 4.180 3 C -0.134 4.134 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.148 4.148 8 C -0.178 4.178 9 C 0.048 3.952 10 H 0.114 0.886 11 O -0.379 6.379 12 C -0.022 4.022 13 N -0.382 5.382 14 C 0.130 3.870 15 C -0.327 4.327 16 C -0.093 4.093 17 C -0.254 4.254 18 C 0.110 3.890 19 C -0.534 4.534 20 H 0.089 0.911 21 C -0.178 4.178 22 N -0.449 5.449 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.191 1.191 26 H -0.183 1.183 27 C -0.339 4.339 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.235 0.765 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.229 0.771 47 H 0.131 0.869 48 H 0.127 0.873 49 H 0.115 0.885 50 H 0.098 0.902 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.416 -15.363 -12.745 27.847 hybrid contribution 0.796 0.484 0.255 0.966 sum -18.620 -14.879 -12.491 26.909 Atomic orbital electron populations 1.24012 0.96129 1.02350 1.01471 1.23123 0.96297 0.98931 0.99679 1.20800 0.98260 0.95191 0.99102 1.21507 0.97685 0.97736 0.97972 1.21591 0.97978 0.97445 0.98580 1.21574 0.98009 0.97203 0.98588 1.21465 0.97481 0.97756 0.98101 1.22164 0.99142 0.96369 1.00165 1.22080 0.91009 0.99171 0.82918 0.88618 1.86551 1.51962 1.55784 1.43574 1.22016 0.95965 0.85180 0.99057 1.44429 1.51386 1.16433 1.25982 1.17575 0.89013 0.92599 0.87776 1.20155 1.12105 1.00280 1.00200 1.20736 0.95625 0.95793 0.97174 1.21110 1.07006 0.95758 1.01477 1.17706 0.88934 0.93072 0.89315 1.19813 1.07026 0.95725 1.30819 0.91120 1.26754 0.95416 1.02692 0.92907 1.69917 1.11713 1.33506 1.29788 0.85218 0.77853 0.77146 0.79526 1.18611 1.19052 1.18346 1.20515 1.13210 0.97355 1.02800 0.87852 0.88460 0.87004 0.91691 0.90835 0.91714 0.92242 0.92233 0.92016 0.91764 0.91955 0.91978 0.92467 0.90197 0.90453 0.76534 0.92105 0.92739 0.77128 0.86860 0.87289 0.88540 0.90229 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.16 -1.76 9.52 25.65 0.24 -1.51 16 3 C -0.10 -1.01 5.66 29.85 0.17 -0.85 16 4 C -0.11 -1.18 5.20 30.59 0.16 -1.02 16 5 C -0.12 -1.34 5.22 30.60 0.16 -1.18 16 6 C -0.12 -1.38 5.21 30.60 0.16 -1.22 16 7 C -0.11 -1.55 5.11 30.60 0.16 -1.40 16 8 C -0.14 -2.07 4.89 30.60 0.15 -1.92 16 9 C 0.11 2.16 3.00 30.59 0.09 2.25 16 10 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 11 O -0.57 -12.49 12.82 -148.98 -1.91 -14.40 16 12 C 0.10 2.68 4.54 86.38 0.39 3.07 16 13 N -0.75 -26.45 5.68 -339.58 -1.93 -28.37 16 14 C 0.23 10.55 6.64 38.17 0.25 10.81 16 15 C -0.30 -13.65 9.32 22.59 0.21 -13.44 16 16 C -0.07 -3.62 10.01 22.20 0.22 -3.39 16 17 C -0.23 -12.95 8.70 22.76 0.20 -12.75 16 18 C 0.11 6.46 5.57 -21.31 -0.12 6.34 16 19 C -0.50 -28.73 9.05 23.46 0.21 -28.51 16 20 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 21 C 0.04 1.96 5.14 85.25 0.44 2.40 16 22 N -0.82 -44.84 10.96 21.83 0.24 -44.60 16 23 Si 0.98 39.65 29.60 68.60 2.03 41.68 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 C -0.31 -16.46 9.63 22.86 0.22 -16.24 16 28 H 0.10 0.87 8.06 -2.91 -0.02 0.85 16 29 H 0.10 0.94 7.84 -2.91 -0.02 0.92 16 30 H 0.11 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.06 0.69 7.79 -2.39 -0.02 0.67 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.39 6.31 9.05 -74.06 -0.67 5.64 16 44 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 45 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 46 H 0.39 13.46 8.48 -92.71 -0.79 12.67 16 47 H 0.11 4.34 6.70 -2.91 -0.02 4.33 16 48 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 49 H 0.10 5.59 6.15 -2.91 -0.02 5.58 16 50 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 51 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -64.40 414.82 2.15 -62.25 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.57 Total: 43.14 kcal Atomic # 6 Polarization: -63.98 SS G_CDS: 4.29 Total: -59.69 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.69 Total: -72.97 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.91 Total: -14.40 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -64.40 2.15 -62.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253246738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.273 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds