Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48499 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47090 * 299.99767 * 3 2 1 6 6 H 1.48507 * 109.47505 * 59.99720 * 3 2 1 7 7 C 1.37876 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47426 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47485 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00276 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47181 * 204.99819 * 13 12 11 15 15 C 1.53001 * 109.47375 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46713 * 59.99735 * 15 14 13 17 17 O 1.42903 * 109.47232 * 60.00467 * 16 15 14 18 18 C 1.42899 * 114.00342 * 149.99933 * 17 16 15 19 19 C 1.50701 * 109.47103 * 180.02562 * 18 17 16 20 20 C 1.38235 * 119.99808 * 89.99842 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00069 * 0.09581 * 21 20 19 23 23 C 1.38234 * 119.99866 * 359.86117 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97588 * 19 18 17 25 25 C 1.52996 * 109.47416 * 300.00240 * 16 15 14 26 26 C 1.52995 * 109.47218 * 84.99797 * 13 12 11 27 27 H 0.97001 * 119.99873 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47771 * 59.99466 * 9 7 2 29 29 H 1.09005 * 109.46694 * 299.99082 * 9 7 2 30 30 H 1.09007 * 109.47132 * 59.99187 * 10 9 7 31 31 H 1.09003 * 109.46848 * 299.99803 * 10 9 7 32 32 H 1.09000 * 109.47114 * 59.99434 * 11 10 9 33 33 H 1.09005 * 109.46668 * 299.99718 * 11 10 9 34 34 H 1.00901 * 111.00110 * 303.95347 * 12 11 10 35 35 H 1.09003 * 109.46643 * 324.99511 * 13 12 11 36 36 H 1.09003 * 109.47227 * 59.99396 * 14 13 12 37 37 H 1.09002 * 109.47076 * 299.99980 * 14 13 12 38 38 H 1.08994 * 109.47135 * 300.00435 * 15 14 13 39 39 H 1.09000 * 109.47387 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46963 * 179.97438 * 16 15 14 41 41 H 1.08993 * 109.47528 * 59.99500 * 18 17 16 42 42 H 1.09001 * 109.46686 * 299.99411 * 18 17 16 43 43 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 44 44 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.99666 * 179.97438 * 22 21 20 46 46 H 1.08000 * 119.99729 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 48 48 H 1.09008 * 109.47248 * 179.97438 * 25 16 15 49 49 H 1.08994 * 109.47345 * 299.99859 * 25 16 15 50 50 H 1.09002 * 109.46877 * 300.00342 * 26 13 12 51 51 H 1.08997 * 109.47342 * 59.99583 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7346 -7.3950 0.0030 14 6 2.6409 -8.4660 0.6132 15 6 1.9113 -9.8109 0.6151 16 6 1.5567 -10.2006 -0.8213 17 8 2.7534 -10.3091 -1.5947 18 6 2.6737 -11.2595 -2.6589 19 6 3.9837 -11.2912 -3.4032 20 6 4.9817 -12.1627 -3.0090 21 6 6.1831 -12.1922 -3.6921 22 6 6.3872 -11.3488 -4.7682 23 6 5.3889 -10.4780 -5.1629 24 6 4.1871 -10.4492 -4.4804 25 6 0.6504 -9.1296 -1.4314 26 6 1.3805 -7.7845 -1.4335 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8895 29 1 0.6241 -2.5566 0.8904 30 1 2.8720 -3.6042 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8533 -5.0451 -0.8885 33 1 0.8540 -5.0445 0.8915 34 1 3.0698 -6.0370 -0.7796 35 1 0.8216 -7.3126 0.5928 36 1 2.8932 -8.1885 1.6367 37 1 3.5539 -8.5484 0.0235 38 1 0.9985 -9.7282 1.2049 39 1 2.5572 -10.5740 1.0494 40 1 1.0373 -11.1590 -0.8200 41 1 1.8740 -10.9738 -3.3421 42 1 2.4654 -12.2476 -2.2486 43 1 4.8244 -12.8175 -2.1646 44 1 6.9630 -12.8728 -3.3838 45 1 7.3260 -11.3716 -5.3015 46 1 5.5482 -9.8194 -6.0038 47 1 3.4074 -9.7683 -4.7884 48 1 0.3981 -9.4071 -2.4550 49 1 -0.2624 -9.0469 -0.8416 50 1 0.7348 -7.0214 -1.8682 51 1 2.2934 -7.8668 -2.0232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257824175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = -53.868177 kcal Electronic energy + Delta-G solvation = -25899.468482 eV Core-core repulsion = 22376.045957 eV Total energy + Delta-G solvation = -3523.422525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96230 -39.21699 -37.12383 -34.95402 -33.21997 -32.06219 -31.19990 -30.98721 -30.84504 -28.29030 -26.28563 -25.53644 -22.91706 -22.84689 -22.46345 -21.61367 -21.42289 -20.31528 -19.55370 -17.31306 -16.52393 -16.34582 -16.13497 -15.95267 -15.45357 -14.93724 -14.74996 -14.66532 -14.33088 -13.96233 -13.73012 -13.69310 -13.39330 -13.15329 -12.87780 -12.71920 -12.50318 -12.27921 -12.19367 -11.97072 -11.59418 -11.42086 -11.36854 -11.20303 -11.14541 -10.85812 -10.75819 -10.54024 -10.49598 -10.45838 -10.23121 -9.65965 -9.61622 -9.25863 -9.21162 -9.13526 -8.98221 -8.30473 -7.98880 -5.95594 -3.97231 0.96570 1.11035 3.24906 3.34130 3.41296 3.46327 3.79606 4.36041 4.48496 4.49562 4.57494 4.62968 4.66158 4.71151 4.81049 4.87867 4.93601 5.02892 5.09320 5.19327 5.22588 5.33697 5.38233 5.40204 5.44113 5.48201 5.61958 5.66010 5.71194 5.73516 5.85598 5.86543 5.91795 6.00566 6.14307 6.15433 6.16566 6.20997 6.28939 6.37660 6.41623 6.43763 6.67969 6.80573 6.87679 7.01814 7.20737 7.49463 7.73688 7.77197 7.89889 8.05545 8.49282 9.10349 9.66514 11.15930 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002132 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.091270 B =13131.049776 C =14297.211343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.687 5.687 13 C 0.089 3.911 14 C -0.102 4.102 15 C -0.114 4.114 16 C 0.090 3.910 17 O -0.366 6.366 18 C 0.102 3.898 19 C -0.088 4.088 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.098 4.098 25 C -0.136 4.136 26 C -0.142 4.142 27 H 0.259 0.741 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.337 0.663 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -30.005 -7.072 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.316 5.316 13 C -0.022 4.022 14 C -0.140 4.140 15 C -0.152 4.152 16 C 0.032 3.968 17 O -0.285 6.285 18 C 0.025 3.975 19 C -0.088 4.088 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.116 4.116 25 C -0.174 4.174 26 C -0.182 4.182 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.250 -29.746 -6.333 31.048 hybrid contribution -0.232 0.826 -1.093 1.390 sum 6.018 -28.920 -7.426 30.458 Atomic orbital electron populations 1.69984 1.06047 1.26374 1.51282 1.25042 0.94861 0.99276 0.95474 0.86540 0.80164 0.83819 0.77511 1.19720 1.21081 1.21039 1.21310 0.93104 0.91069 1.49973 0.92623 1.19071 0.94043 0.91444 0.97044 1.21622 0.99149 0.93091 1.00657 1.22129 0.94184 0.90904 0.99632 1.60647 1.19992 1.01208 1.49747 1.21559 0.96525 0.89656 0.94421 1.21395 0.98833 0.92318 1.01441 1.21634 1.01187 0.98387 0.93943 1.22129 0.85785 0.97202 0.91668 1.88049 1.35857 1.60497 1.44106 1.21319 0.94260 0.92570 0.89342 1.19609 0.95654 0.97332 0.96213 1.21055 0.93069 0.98631 0.99034 1.21150 0.97282 0.99574 0.96255 1.21209 0.99045 0.96007 0.97127 1.21181 0.93617 0.99099 1.00180 1.21092 0.97606 0.97617 0.95258 1.21970 0.98515 0.96022 1.00943 1.22165 1.00946 0.96215 0.98835 0.93149 0.96876 0.96615 0.92616 0.93742 0.95927 0.91707 0.84485 0.91074 0.91513 0.91229 0.90778 0.91401 0.92490 0.92666 0.92736 0.86048 0.85982 0.86042 0.85866 0.85950 0.92195 0.91067 0.92240 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.32 5.41 -26.73 -0.14 -2.46 16 11 C 0.06 1.09 5.48 -3.83 -0.02 1.07 16 12 N -0.69 -10.64 6.25 -106.73 -0.67 -11.30 16 13 C 0.09 1.14 2.47 -67.72 -0.17 0.97 16 14 C -0.10 -1.18 5.38 -26.73 -0.14 -1.33 16 15 C -0.11 -1.05 5.66 -26.73 -0.15 -1.20 16 16 C 0.09 0.81 2.92 -26.73 -0.08 0.73 16 17 O -0.37 -3.78 8.62 -35.23 -0.30 -4.08 16 18 C 0.10 0.85 5.87 36.01 0.21 1.07 16 19 C -0.09 -0.81 5.51 -104.63 -0.58 -1.38 16 20 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 21 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.10 -0.89 9.70 -39.59 -0.38 -1.27 16 25 C -0.14 -1.29 5.63 -26.71 -0.15 -1.44 16 26 C -0.14 -1.68 5.03 -26.71 -0.13 -1.81 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.41 7.44 -51.93 -0.39 0.02 16 33 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 34 H 0.34 5.10 8.47 -39.29 -0.33 4.77 16 35 H 0.07 0.95 7.80 -51.93 -0.40 0.54 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 41 H 0.06 0.42 7.81 -51.93 -0.41 0.02 16 42 H 0.05 0.38 8.03 -51.93 -0.42 -0.04 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.06 0.53 7.87 -51.92 -0.41 0.12 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 51 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -31.69 405.02 -12.42 -44.11 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.40 Total: 0.71 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.87 Total: -25.85 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.07 Total: -38.12 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.30 Total: -4.08 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.69 -12.42 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257824175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.760 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds