Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48499 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47090 * 299.99767 * 3 2 1 6 6 H 1.48507 * 109.47505 * 59.99720 * 3 2 1 7 7 C 1.37876 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47426 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47485 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00276 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47181 * 204.99819 * 13 12 11 15 15 C 1.53001 * 109.47375 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46713 * 59.99735 * 15 14 13 17 17 O 1.42903 * 109.47232 * 60.00467 * 16 15 14 18 18 C 1.42899 * 114.00342 * 149.99933 * 17 16 15 19 19 C 1.50701 * 109.47103 * 180.02562 * 18 17 16 20 20 C 1.38235 * 119.99808 * 89.99842 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00069 * 0.09581 * 21 20 19 23 23 C 1.38234 * 119.99866 * 359.86117 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97588 * 19 18 17 25 25 C 1.52996 * 109.47416 * 300.00240 * 16 15 14 26 26 C 1.52995 * 109.47218 * 84.99797 * 13 12 11 27 27 H 0.97001 * 119.99873 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47771 * 59.99466 * 9 7 2 29 29 H 1.09005 * 109.46694 * 299.99082 * 9 7 2 30 30 H 1.09007 * 109.47132 * 59.99187 * 10 9 7 31 31 H 1.09003 * 109.46848 * 299.99803 * 10 9 7 32 32 H 1.09000 * 109.47114 * 59.99434 * 11 10 9 33 33 H 1.09005 * 109.46668 * 299.99718 * 11 10 9 34 34 H 1.00901 * 111.00110 * 303.95347 * 12 11 10 35 35 H 1.09003 * 109.46643 * 324.99511 * 13 12 11 36 36 H 1.09003 * 109.47227 * 59.99396 * 14 13 12 37 37 H 1.09002 * 109.47076 * 299.99980 * 14 13 12 38 38 H 1.08994 * 109.47135 * 300.00435 * 15 14 13 39 39 H 1.09000 * 109.47387 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46963 * 179.97438 * 16 15 14 41 41 H 1.08993 * 109.47528 * 59.99500 * 18 17 16 42 42 H 1.09001 * 109.46686 * 299.99411 * 18 17 16 43 43 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 44 44 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.99666 * 179.97438 * 22 21 20 46 46 H 1.08000 * 119.99729 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 48 48 H 1.09008 * 109.47248 * 179.97438 * 25 16 15 49 49 H 1.08994 * 109.47345 * 299.99859 * 25 16 15 50 50 H 1.09002 * 109.46877 * 300.00342 * 26 13 12 51 51 H 1.08997 * 109.47342 * 59.99583 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7346 -7.3950 0.0030 14 6 2.6409 -8.4660 0.6132 15 6 1.9113 -9.8109 0.6151 16 6 1.5567 -10.2006 -0.8213 17 8 2.7534 -10.3091 -1.5947 18 6 2.6737 -11.2595 -2.6589 19 6 3.9837 -11.2912 -3.4032 20 6 4.9817 -12.1627 -3.0090 21 6 6.1831 -12.1922 -3.6921 22 6 6.3872 -11.3488 -4.7682 23 6 5.3889 -10.4780 -5.1629 24 6 4.1871 -10.4492 -4.4804 25 6 0.6504 -9.1296 -1.4314 26 6 1.3805 -7.7845 -1.4335 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8895 29 1 0.6241 -2.5566 0.8904 30 1 2.8720 -3.6042 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8533 -5.0451 -0.8885 33 1 0.8540 -5.0445 0.8915 34 1 3.0698 -6.0370 -0.7796 35 1 0.8216 -7.3126 0.5928 36 1 2.8932 -8.1885 1.6367 37 1 3.5539 -8.5484 0.0235 38 1 0.9985 -9.7282 1.2049 39 1 2.5572 -10.5740 1.0494 40 1 1.0373 -11.1590 -0.8200 41 1 1.8740 -10.9738 -3.3421 42 1 2.4654 -12.2476 -2.2486 43 1 4.8244 -12.8175 -2.1646 44 1 6.9630 -12.8728 -3.3838 45 1 7.3260 -11.3716 -5.3015 46 1 5.5482 -9.8194 -6.0038 47 1 3.4074 -9.7683 -4.7884 48 1 0.3981 -9.4071 -2.4550 49 1 -0.2624 -9.0469 -0.8416 50 1 0.7348 -7.0214 -1.8682 51 1 2.2934 -7.8668 -2.0232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257824175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = -70.328474 kcal Electronic energy + Delta-G solvation = -25900.182254 eV Core-core repulsion = 22376.045957 eV Total energy + Delta-G solvation = -3524.136297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69749 -39.93021 -38.14168 -36.38627 -34.96969 -33.16208 -32.33162 -31.79796 -31.68804 -29.62469 -27.41043 -26.80422 -24.39129 -23.59472 -23.45398 -22.49991 -22.21876 -21.96184 -20.59059 -18.49722 -17.92338 -17.25354 -17.08080 -16.63425 -16.55702 -16.32337 -16.07377 -15.70003 -15.50014 -15.16544 -14.61066 -14.42927 -14.31570 -14.26534 -13.95686 -13.81429 -13.66950 -13.37120 -13.27061 -13.13188 -13.02163 -12.77605 -12.69575 -12.46836 -12.24681 -12.05645 -11.93622 -11.85675 -11.64883 -11.59019 -11.41899 -11.34935 -11.23086 -10.92387 -10.56777 -10.36254 -9.82473 -9.74958 -9.25639 -8.21102 -6.32131 0.35177 0.49686 1.39172 1.39696 1.53531 2.40396 2.62320 3.11690 3.12889 3.28205 3.78242 3.80677 3.89279 3.93191 4.08806 4.15698 4.16657 4.25617 4.28797 4.32577 4.37126 4.40237 4.43817 4.52895 4.60606 4.61965 4.65643 4.68360 4.77432 4.79180 4.86880 4.97564 5.00808 5.08848 5.12895 5.14246 5.15283 5.22728 5.24680 5.27724 5.43970 5.48032 5.53073 5.55236 5.61249 5.67338 5.74094 5.84768 6.09768 6.14900 6.28085 6.37009 6.50559 6.84645 7.36973 8.91071 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002132 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.091270 B =13131.049776 C =14297.211343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.075 3.925 12 N -0.689 5.689 13 C 0.089 3.911 14 C -0.095 4.095 15 C -0.110 4.110 16 C 0.090 3.910 17 O -0.385 6.385 18 C 0.101 3.899 19 C -0.104 4.104 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.133 4.133 26 C -0.136 4.136 27 H 0.264 0.736 28 H -0.010 1.010 29 H -0.008 1.008 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.340 0.660 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.135 0.865 47 H 0.123 0.877 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.045 0.955 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -31.171 -7.076 32.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.054 4.054 12 N -0.319 5.319 13 C -0.021 4.021 14 C -0.133 4.133 15 C -0.148 4.148 16 C 0.033 3.967 17 O -0.305 6.305 18 C 0.025 3.975 19 C -0.104 4.104 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.134 4.134 25 C -0.172 4.172 26 C -0.175 4.175 27 H 0.073 0.927 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.152 0.848 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.153 0.847 47 H 0.141 0.859 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.063 0.937 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.157 -30.937 -6.339 32.381 hybrid contribution -0.505 1.162 -1.108 1.683 sum 6.652 -29.775 -7.448 31.405 Atomic orbital electron populations 1.70109 1.07779 1.27723 1.51790 1.26019 0.95845 1.03464 0.94727 0.85366 0.79007 0.78599 0.77876 1.18686 1.20207 1.20225 1.21720 0.93502 0.92423 1.50378 0.92356 1.18968 0.94393 0.93110 0.94719 1.21382 0.98028 0.93131 1.00533 1.21818 0.93981 0.90249 0.99349 1.60609 1.19662 1.01612 1.49995 1.21636 0.96536 0.88597 0.95317 1.21303 0.98232 0.93303 1.00435 1.21639 1.01642 0.96875 0.94637 1.22180 0.85489 0.97980 0.91066 1.88031 1.36555 1.61216 1.44701 1.21408 0.94070 0.92989 0.89060 1.19819 0.96382 0.97686 0.96474 1.21308 0.93232 0.98796 0.99573 1.21474 0.97635 0.99748 0.96038 1.21522 0.99701 0.95668 0.97290 1.21438 0.93635 0.99583 1.00630 1.21264 0.98162 0.98124 0.95877 1.21972 0.98700 0.94693 1.01803 1.22046 1.00473 0.97385 0.97565 0.92742 0.99135 0.98985 0.93003 0.93402 0.96126 0.92131 0.84232 0.91257 0.92197 0.92643 0.89436 0.90467 0.90101 0.92223 0.91114 0.84789 0.83963 0.84106 0.84676 0.85930 0.91446 0.90130 0.93655 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -4.07 5.41 30.59 0.17 -3.90 16 11 C 0.08 2.75 5.48 86.30 0.47 3.22 16 12 N -0.69 -21.30 6.25 -491.59 -3.07 -24.37 16 13 C 0.09 2.24 2.47 44.91 0.11 2.35 16 14 C -0.09 -2.11 5.38 30.59 0.16 -1.95 16 15 C -0.11 -1.81 5.66 30.59 0.17 -1.63 16 16 C 0.09 1.42 2.92 30.59 0.09 1.51 16 17 O -0.39 -7.42 8.62 -148.98 -1.28 -8.70 16 18 C 0.10 1.56 5.87 71.24 0.42 1.97 16 19 C -0.10 -1.83 5.51 -19.87 -0.11 -1.94 16 20 C -0.11 -1.76 9.70 22.27 0.22 -1.54 16 21 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 22 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 23 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 24 C -0.12 -2.10 9.70 22.27 0.22 -1.89 16 25 C -0.13 -2.32 5.63 30.61 0.17 -2.14 16 26 C -0.14 -3.13 5.03 30.61 0.15 -2.98 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 33 H 0.06 2.26 8.05 -2.38 -0.02 2.25 16 34 H 0.34 10.27 8.47 -89.69 -0.76 9.51 16 35 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.40 7.68 -2.39 -0.02 1.38 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 0.93 7.79 -2.38 -0.02 0.91 16 41 H 0.06 0.84 7.81 -2.39 -0.02 0.82 16 42 H 0.07 0.83 8.03 -2.39 -0.02 0.82 16 43 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 48 H 0.07 1.08 7.87 -2.38 -0.02 1.07 16 49 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.04 1.16 7.45 -2.39 -0.02 1.14 16 51 H 0.06 1.51 7.67 -2.39 -0.02 1.49 16 Total: -1.00 -68.27 405.02 1.82 -66.45 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.11 Total: 21.11 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.76 Total: -44.11 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.79 Total: -82.19 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.28 Total: -8.70 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.27 1.82 -66.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257824175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.880 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds