Wall clock time and date at job start Tue Mar 31 2020 11:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38174 * 119.83311 * 2 1 4 4 C 1.38119 * 119.99964 * 180.02562 * 3 2 1 5 5 C 1.38652 * 119.86905 * 359.97438 * 4 3 2 6 6 O 1.35903 * 119.94816 * 180.02562 * 5 4 3 7 7 C 1.38939 * 120.10071 * 0.02562 * 5 4 3 8 8 C 1.38169 * 119.81456 * 359.97438 * 7 5 4 9 9 C 1.51381 * 109.75268 * 180.02562 * 8 7 5 10 10 H 1.09002 * 110.30295 * 136.11064 * 9 8 7 11 11 C 1.52993 * 110.38829 * 258.22174 * 9 8 7 12 12 C 1.54346 * 105.16990 * 17.18910 * 9 8 7 13 13 C 1.51362 * 130.40516 * 179.97438 * 7 5 4 14 14 H 1.08994 * 110.30044 * 281.73666 * 13 7 5 15 15 N 1.46904 * 110.30148 * 43.88819 * 13 7 5 16 16 C 1.46902 * 110.99782 * 196.95378 * 15 13 7 17 17 C 1.53000 * 109.46944 * 185.87222 * 16 15 13 18 18 C 1.52998 * 109.46857 * 299.99639 * 17 16 15 19 19 C 1.52994 * 109.47277 * 60.00272 * 17 16 15 20 20 C 1.53004 * 109.46856 * 180.02562 * 17 16 15 21 21 C 1.50697 * 109.47018 * 179.97438 * 20 17 16 22 22 H 1.07995 * 119.99995 * 0.02562 * 21 20 17 23 23 C 1.37878 * 120.00141 * 179.97438 * 21 20 17 24 24 N 1.31510 * 120.00209 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99670 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46995 * 90.00075 * 25 23 21 27 27 H 1.48503 * 109.47005 * 209.99735 * 25 23 21 28 28 H 1.48503 * 109.47515 * 329.99959 * 25 23 21 29 29 H 1.08999 * 109.47365 * 89.99971 * 1 2 3 30 30 H 1.09000 * 109.46935 * 210.00268 * 1 2 3 31 31 H 1.09000 * 109.47106 * 329.99993 * 1 2 3 32 32 H 1.08006 * 120.00248 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.06995 * 180.02562 * 4 3 2 34 34 H 0.96699 * 114.00267 * 269.98354 * 6 5 4 35 35 H 1.09004 * 109.47421 * 177.16746 * 11 9 8 36 36 H 1.08996 * 109.47319 * 297.16856 * 11 9 8 37 37 H 1.09006 * 109.47300 * 57.16937 * 11 9 8 38 38 H 1.09000 * 110.82480 * 91.88413 * 12 9 8 39 39 H 1.08999 * 110.82694 * 215.23408 * 12 9 8 40 40 H 1.00897 * 110.99904 * 320.91097 * 15 13 7 41 41 H 1.08999 * 109.47450 * 305.87493 * 16 15 13 42 42 H 1.08998 * 109.46785 * 65.87343 * 16 15 13 43 43 H 1.09001 * 109.46813 * 60.00588 * 18 17 16 44 44 H 1.09005 * 109.47380 * 180.02562 * 18 17 16 45 45 H 1.08998 * 109.47817 * 300.00457 * 18 17 16 46 46 H 1.08999 * 109.47288 * 60.00226 * 19 17 16 47 47 H 1.09006 * 109.46784 * 179.97438 * 19 17 16 48 48 H 1.08999 * 109.46871 * 299.99428 * 19 17 16 49 49 H 1.08999 * 109.47201 * 300.00065 * 20 17 16 50 50 H 1.08998 * 109.47122 * 59.99969 * 20 17 16 51 51 H 0.97001 * 120.00206 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 -0.0005 5 6 4.2696 0.0023 -0.0005 6 8 5.6286 0.0044 -0.0005 7 6 3.5777 -1.2026 -0.0005 8 6 2.1960 -1.2014 0.0000 9 6 1.6832 -2.6257 0.0005 10 1 0.8622 -2.7318 0.7096 11 6 1.2267 -3.0283 -1.4031 12 6 2.8855 -3.4877 0.4405 13 6 4.0887 -2.6273 -0.0010 14 1 4.4117 -2.9129 -1.0021 15 7 5.1958 -2.7721 0.9536 16 6 5.9599 -3.9991 0.6916 17 6 7.0084 -4.1912 1.7891 18 6 7.9584 -2.9919 1.8023 19 6 6.3112 -4.3046 3.1463 20 6 7.8046 -5.4688 1.5158 21 6 8.8378 -5.6577 2.5965 22 1 8.9182 -4.9386 3.3982 23 6 9.6797 -6.7490 2.5622 24 7 10.5810 -6.9141 3.5055 25 14 9.5401 -7.9930 1.1757 26 1 10.4261 -7.5870 0.0553 27 1 9.9489 -9.3325 1.6696 28 1 8.1344 -8.0486 0.7001 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6517 2.1324 0.0004 33 1 4.1140 2.1388 -0.0001 34 1 6.0219 0.0047 -0.8839 35 1 0.9079 -4.0707 -1.3965 36 1 0.3938 -2.3956 -1.7098 37 1 2.0531 -2.9056 -2.1032 38 1 2.8858 -3.6296 1.5212 39 1 2.8828 -4.4483 -0.0746 40 1 5.7964 -1.9615 0.9365 41 1 5.2832 -4.8535 0.6820 42 1 6.4566 -3.9182 -0.2753 43 1 7.3914 -2.0815 1.9968 44 1 8.7057 -3.1288 2.5839 45 1 8.4550 -2.9110 0.8354 46 1 5.6345 -5.1591 3.1368 47 1 7.0583 -4.4419 3.9281 48 1 5.7444 -3.3942 3.3407 49 1 7.1281 -6.3234 1.5060 50 1 8.3013 -5.3875 0.5490 51 1 11.1736 -7.6817 3.4812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258406433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:59 Heat of formation + Delta-G solvation = -41.977339 kcal Electronic energy + Delta-G solvation = -27556.154257 eV Core-core repulsion = 24033.247357 eV Total energy + Delta-G solvation = -3522.906900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91823 -37.89281 -37.54783 -36.11282 -33.67754 -32.32667 -31.67155 -30.08142 -28.22131 -27.36324 -26.55004 -26.26996 -25.44686 -24.00163 -22.26904 -21.71569 -21.06656 -19.76990 -17.97750 -17.70046 -16.73587 -16.45010 -15.85147 -15.54085 -15.48459 -14.40822 -14.21097 -14.17346 -13.95586 -13.90879 -13.73858 -13.35012 -13.03983 -12.97476 -12.75636 -12.53636 -12.36653 -12.18793 -12.08813 -11.87605 -11.71937 -11.59032 -11.16592 -11.07690 -10.99133 -10.89204 -10.80763 -10.74997 -10.46283 -10.42222 -10.23365 -9.75287 -9.61107 -9.22012 -8.86217 -8.83791 -8.53947 -8.45631 -7.99803 -5.95745 -3.91398 1.05222 1.13879 3.34388 3.36817 3.42030 3.45817 4.01127 4.23424 4.32597 4.51788 4.55919 4.68834 4.79270 4.86432 5.00638 5.06831 5.22210 5.25584 5.32537 5.37314 5.37446 5.43039 5.56277 5.61518 5.67905 5.73168 5.75771 5.78148 5.85148 5.96503 5.98448 6.05648 6.15521 6.17895 6.26619 6.29131 6.34950 6.44892 6.53701 6.65744 6.71277 6.79018 6.88830 7.17312 7.22804 7.25792 7.39819 7.42050 7.51970 7.53925 7.81794 7.90626 8.65283 9.11056 9.67525 11.17521 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.003071 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.347082 B = 9114.247754 C = 9815.428759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.107 4.107 4 C -0.144 4.144 5 C 0.117 3.883 6 O -0.494 6.494 7 C -0.109 4.109 8 C -0.068 4.068 9 C -0.052 4.052 10 H 0.081 0.919 11 C -0.139 4.139 12 C -0.107 4.107 13 C 0.131 3.869 14 H 0.050 0.950 15 N -0.677 5.677 16 C 0.067 3.933 17 C -0.046 4.046 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.004 4.004 21 C -0.505 4.505 22 H 0.078 0.922 23 C 0.064 3.936 24 N -0.907 5.907 25 Si 0.875 3.125 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.267 1.267 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.387 0.613 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.353 0.647 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.014 0.986 50 H 0.007 0.993 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.068 14.983 -11.572 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.072 3.928 6 O -0.303 6.303 7 C -0.110 4.110 8 C -0.069 4.069 9 C -0.071 4.071 10 H 0.100 0.900 11 C -0.196 4.196 12 C -0.145 4.145 13 C 0.021 3.979 14 H 0.068 0.932 15 N -0.312 5.312 16 C -0.062 4.062 17 C -0.046 4.046 18 C -0.187 4.187 19 C -0.174 4.174 20 C -0.042 4.042 21 C -0.543 4.543 22 H 0.096 0.904 23 C -0.136 4.136 24 N -0.546 5.546 25 Si 0.703 3.297 26 H -0.206 1.206 27 H -0.216 1.216 28 H -0.191 1.191 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.242 0.758 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.176 0.824 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.032 0.968 50 H 0.025 0.975 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.361 14.577 -10.420 27.882 hybrid contribution 0.794 -0.432 -2.068 2.257 sum -20.568 14.146 -12.488 27.912 Atomic orbital electron populations 1.20754 0.91259 1.02749 1.02101 1.19434 0.96005 0.91738 1.01231 1.20772 0.93499 0.97315 1.00938 1.21269 0.94519 0.97438 1.02979 1.18064 0.82703 0.91020 1.01002 1.84842 1.16033 1.96224 1.33248 1.20926 0.94547 0.94515 1.00988 1.20240 0.93129 0.94470 0.99030 1.20638 0.98492 0.90120 0.97834 0.90049 1.21763 1.01113 1.01243 0.95492 1.22482 0.91854 0.97303 1.02859 1.20915 0.93111 0.89478 0.94395 0.93210 1.60703 1.13598 1.06549 1.50333 1.22163 0.95193 0.91817 0.96991 1.20380 0.93293 0.96784 0.94190 1.21761 0.99163 0.96207 1.01549 1.21597 0.99320 0.99665 0.96808 1.19632 0.95307 0.92450 0.96814 1.21155 1.14845 1.08981 1.09280 0.90406 1.25019 0.95207 0.97757 0.95666 1.69912 1.21137 1.29896 1.33703 0.86849 0.78785 0.81065 0.82961 1.20566 1.21601 1.19147 0.91368 0.91459 0.91679 0.85635 0.85323 0.75779 0.92007 0.92572 0.92630 0.89424 0.90794 0.82382 0.91742 0.96194 0.94249 0.91383 0.94366 0.94382 0.92254 0.93584 0.96803 0.97501 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.87 36.00 0.36 -0.43 16 2 C -0.08 -0.81 5.88 -104.55 -0.62 -1.43 16 3 C -0.11 -0.99 9.68 -39.65 -0.38 -1.38 16 4 C -0.14 -1.47 9.98 -39.47 -0.39 -1.86 16 5 C 0.12 1.37 6.62 -39.17 -0.26 1.11 16 6 O -0.49 -5.58 11.53 -19.44 -0.22 -5.80 16 7 C -0.11 -1.33 5.76 -104.06 -0.60 -1.93 16 8 C -0.07 -0.74 5.32 -104.22 -0.55 -1.30 16 9 C -0.05 -0.51 2.96 -90.74 -0.27 -0.77 16 10 H 0.08 0.73 7.62 -51.93 -0.40 0.33 16 11 C -0.14 -1.12 9.15 37.15 0.34 -0.78 16 12 C -0.11 -1.24 5.87 -25.31 -0.15 -1.38 16 13 C 0.13 1.68 3.13 -67.82 -0.21 1.47 16 14 H 0.05 0.64 7.98 -51.93 -0.41 0.22 16 15 N -0.68 -10.23 5.41 -106.84 -0.58 -10.81 16 16 C 0.07 1.14 4.48 -3.82 -0.02 1.12 16 17 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 18 C -0.13 -2.52 7.88 37.16 0.29 -2.23 16 19 C -0.12 -2.34 8.07 37.15 0.30 -2.04 16 20 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 21 C -0.50 -14.17 8.20 -34.44 -0.28 -14.46 16 22 H 0.08 2.34 5.92 -52.49 -0.31 2.03 16 23 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 24 N -0.91 -28.16 13.96 55.43 0.77 -27.38 16 25 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 7.28 -51.93 -0.38 0.08 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.39 2.74 9.06 45.56 0.41 3.15 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 39 H 0.07 0.80 7.90 -51.93 -0.41 0.38 16 40 H 0.35 5.47 4.73 -39.29 -0.19 5.29 16 41 H 0.06 1.09 7.80 -51.93 -0.41 0.68 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 44 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 48 H 0.05 0.86 7.60 -51.93 -0.39 0.46 16 49 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 50 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 51 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -31.86 389.37 -9.65 -41.51 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.10 Total: 5.00 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.72 Total: -25.73 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.20 Total: -38.20 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.22 Total: -5.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.86 -9.65 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258406433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.468 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds