Wall clock time and date at job start Tue Mar 31 2020 11:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.83233 * 2 1 4 4 C 1.38119 * 119.99898 * 180.02562 * 3 2 1 5 5 C 1.38653 * 119.87122 * 0.02562 * 4 3 2 6 6 O 1.35895 * 119.95309 * 179.97438 * 5 4 3 7 7 C 1.38942 * 120.09926 * 359.97438 * 5 4 3 8 8 C 1.38172 * 119.81512 * 0.02562 * 7 5 4 9 9 C 1.51378 * 109.75535 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.30317 * 258.16863 * 9 8 7 11 11 C 1.53001 * 110.30427 * 136.11402 * 9 8 7 12 12 C 1.54344 * 105.17039 * 17.18697 * 9 8 7 13 13 C 1.51358 * 130.40804 * 180.02562 * 7 5 4 14 14 H 1.09001 * 110.30671 * 281.83817 * 13 7 5 15 15 N 1.46895 * 110.30419 * 43.89459 * 13 7 5 16 16 C 1.46899 * 111.00139 * 205.49732 * 15 13 7 17 17 C 1.53002 * 109.46981 * 174.47659 * 16 15 13 18 18 C 1.53002 * 109.47191 * 299.99752 * 17 16 15 19 19 C 1.52999 * 109.47351 * 59.99836 * 17 16 15 20 20 C 1.53004 * 109.46864 * 180.02562 * 17 16 15 21 21 C 1.50700 * 109.46765 * 179.97438 * 20 17 16 22 22 H 1.07997 * 120.00435 * 359.97438 * 21 20 17 23 23 C 1.37879 * 119.99819 * 179.97438 * 21 20 17 24 24 N 1.31508 * 120.00083 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00185 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46869 * 60.00273 * 25 23 21 27 27 H 1.48500 * 109.47284 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47328 * 300.00700 * 25 23 21 29 29 H 1.08995 * 109.47701 * 54.43369 * 1 2 3 30 30 H 1.08997 * 109.47215 * 174.44090 * 1 2 3 31 31 H 1.09009 * 109.47140 * 294.43541 * 1 2 3 32 32 H 1.08001 * 120.00131 * 0.02944 * 3 2 1 33 33 H 1.07998 * 120.06515 * 180.02562 * 4 3 2 34 34 H 0.96696 * 113.99880 * 269.97995 * 6 5 4 35 35 H 1.08995 * 109.47205 * 81.65964 * 11 9 8 36 36 H 1.08995 * 109.47220 * 201.66037 * 11 9 8 37 37 H 1.08995 * 109.46755 * 321.66054 * 11 9 8 38 38 H 1.08998 * 110.82797 * 215.43421 * 12 9 8 39 39 H 1.09008 * 110.82107 * 91.88169 * 12 9 8 40 40 H 1.00899 * 110.99917 * 81.53942 * 15 13 7 41 41 H 1.08993 * 109.47280 * 54.47404 * 16 15 13 42 42 H 1.09000 * 109.46954 * 294.47429 * 16 15 13 43 43 H 1.09005 * 109.47221 * 60.00216 * 18 17 16 44 44 H 1.08996 * 109.47381 * 180.02562 * 18 17 16 45 45 H 1.09001 * 109.47291 * 300.00339 * 18 17 16 46 46 H 1.09000 * 109.47145 * 59.99886 * 19 17 16 47 47 H 1.08996 * 109.47046 * 180.02562 * 19 17 16 48 48 H 1.08996 * 109.46965 * 299.99797 * 19 17 16 49 49 H 1.09000 * 109.46941 * 299.99691 * 20 17 16 50 50 H 1.09001 * 109.47164 * 59.99939 * 20 17 16 51 51 H 0.96998 * 120.00589 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1986 0.0000 4 6 3.5755 1.2027 -0.0005 5 6 4.2696 0.0023 -0.0016 6 8 5.6285 0.0044 -0.0027 7 6 3.5777 -1.2026 -0.0016 8 6 2.1960 -1.2014 -0.0011 9 6 1.6832 -2.6257 -0.0018 10 1 1.3574 -2.9099 -1.0025 11 6 0.5306 -2.7755 0.9933 12 6 2.8855 -3.4881 0.4373 13 6 4.0887 -2.6273 -0.0021 14 1 4.4134 -2.9124 -1.0028 15 7 5.1956 -2.7722 0.9526 16 6 6.0779 -3.8831 0.5711 17 6 7.2890 -3.9164 1.5055 18 6 8.0545 -2.5963 1.3955 19 6 6.8157 -4.1129 2.9471 20 6 8.2082 -5.0731 1.1077 21 6 9.4014 -5.1055 2.0277 22 1 9.4950 -4.3741 2.8168 23 6 10.3737 -6.0690 1.8619 24 7 10.2600 -6.9593 0.9007 25 14 11.8531 -6.1089 3.0017 26 1 11.3946 -6.2990 4.4014 27 1 12.7452 -7.2316 2.6158 28 1 12.5957 -4.8275 2.8939 29 1 -0.3634 0.5977 -0.8359 30 1 -0.3633 -1.0228 -0.0995 31 1 -0.3634 0.4251 0.9357 32 1 1.6516 2.1324 0.0005 33 1 4.1138 2.1389 -0.0001 34 1 6.0211 0.0050 -0.8863 35 1 -0.3942 -2.4277 0.5331 36 1 0.4256 -3.8239 1.2724 37 1 0.7395 -2.1817 1.8831 38 1 2.8847 -4.4469 -0.0813 39 1 2.8857 -3.6309 1.5180 40 1 4.8490 -2.8920 1.8926 41 1 6.4150 -3.7431 -0.4559 42 1 5.5325 -4.8236 0.6495 43 1 7.3999 -1.7719 1.6786 44 1 8.9176 -2.6202 2.0608 45 1 8.3917 -2.4562 0.3684 46 1 6.2704 -5.0534 3.0255 47 1 7.6785 -4.1362 3.6128 48 1 6.1612 -3.2886 3.2301 49 1 7.6631 -6.0137 1.1858 50 1 8.5454 -4.9326 0.0807 51 1 10.9441 -7.6370 0.7838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258406434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:01 Heat of formation + Delta-G solvation = -54.433114 kcal Electronic energy + Delta-G solvation = -27509.927524 eV Core-core repulsion = 23986.480501 eV Total energy + Delta-G solvation = -3523.447022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62508 -39.14946 -38.31891 -36.99299 -35.05168 -34.09109 -32.64826 -30.80628 -29.29726 -28.55648 -27.86125 -27.38562 -26.46108 -24.97672 -23.84030 -23.00912 -21.57303 -20.95173 -19.56470 -18.70054 -18.31224 -17.04393 -16.70207 -16.46438 -16.24345 -16.03956 -15.89242 -15.32963 -15.15205 -14.65156 -14.49862 -14.35390 -14.20386 -14.01645 -13.86975 -13.51649 -13.42908 -13.26585 -13.12279 -12.89116 -12.75230 -12.71597 -12.48421 -12.44024 -12.24466 -12.19433 -12.11572 -12.06683 -11.89116 -11.69374 -11.46753 -11.32956 -11.13282 -10.83540 -10.69907 -10.49235 -9.50930 -9.16784 -9.09377 -8.13376 -6.20037 0.40620 0.43304 1.40247 1.42584 1.49895 2.43971 2.69658 3.20240 3.29106 3.48281 3.54680 3.66665 3.96707 4.09590 4.14214 4.16896 4.22610 4.30835 4.32607 4.42249 4.53246 4.55033 4.67278 4.74871 4.78602 4.81970 4.87962 4.90847 4.93654 4.99290 5.01809 5.09640 5.11272 5.14394 5.20445 5.24080 5.26813 5.37233 5.49182 5.51318 5.52783 5.56702 5.60046 5.63258 5.71672 5.75941 5.90000 5.94264 6.04624 6.19405 6.40040 6.56178 6.94677 7.05707 7.46932 8.98758 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023639 B = 0.002905 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.213865 B = 9634.851033 C =10348.169869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.161 4.161 5 C 0.118 3.882 6 O -0.496 6.496 7 C -0.124 4.124 8 C -0.084 4.084 9 C -0.044 4.044 10 H 0.094 0.906 11 C -0.143 4.143 12 C -0.142 4.142 13 C 0.130 3.870 14 H 0.079 0.921 15 N -0.662 5.662 16 C 0.088 3.912 17 C -0.051 4.051 18 C -0.099 4.099 19 C -0.119 4.119 20 C 0.042 3.958 21 C -0.515 4.515 22 H 0.063 0.937 23 C -0.003 4.003 24 N -0.937 5.937 25 Si 0.954 3.046 26 H -0.268 1.268 27 H -0.286 1.286 28 H -0.270 1.270 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.393 0.607 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.339 0.661 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.037 0.963 47 H 0.043 0.957 48 H 0.061 0.939 49 H -0.016 1.016 50 H -0.016 1.016 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.192 14.971 -3.232 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.179 4.179 5 C 0.074 3.926 6 O -0.307 6.307 7 C -0.126 4.126 8 C -0.084 4.084 9 C -0.063 4.063 10 H 0.112 0.888 11 C -0.200 4.200 12 C -0.181 4.181 13 C 0.020 3.980 14 H 0.097 0.903 15 N -0.292 5.292 16 C -0.041 4.041 17 C -0.052 4.052 18 C -0.157 4.157 19 C -0.177 4.177 20 C 0.005 3.995 21 C -0.553 4.553 22 H 0.081 0.919 23 C -0.200 4.200 24 N -0.579 5.579 25 Si 0.780 3.220 26 H -0.193 1.193 27 H -0.212 1.212 28 H -0.195 1.195 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.250 0.750 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.159 0.841 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.003 0.997 50 H 0.002 0.998 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.755 15.297 -2.988 27.581 hybrid contribution 1.065 -1.241 -0.026 1.635 sum -21.690 14.056 -3.014 26.022 Atomic orbital electron populations 1.21076 0.89547 1.04294 1.02904 1.19694 0.97371 0.91270 1.00906 1.21054 0.93218 0.98376 0.99903 1.21522 0.95205 0.97526 1.03688 1.18299 0.83285 0.91245 0.99813 1.84869 1.15765 1.96373 1.33653 1.20945 0.94439 0.94546 1.02626 1.20535 0.92911 0.95329 0.99646 1.20596 0.95468 0.89425 1.00785 0.88789 1.21991 0.97456 1.02165 0.98412 1.23144 0.94523 0.98825 1.01652 1.20963 0.89897 0.90594 0.96546 0.90253 1.60406 1.19044 1.44680 1.05102 1.21791 0.93060 0.90978 0.98262 1.20455 0.93966 0.95832 0.94935 1.21418 0.98549 0.96227 0.99464 1.21643 1.00136 0.99767 0.96105 1.18985 0.93564 0.92401 0.94567 1.21589 1.05883 1.12852 1.14951 0.91909 1.25894 1.01388 0.95586 0.97114 1.70092 1.35996 1.18104 1.33685 0.85660 0.79268 0.77657 0.79441 1.19328 1.21191 1.19475 0.90538 0.90004 0.90645 0.83488 0.84594 0.74989 0.90183 0.91818 0.93112 0.90093 0.90890 0.84084 0.92711 0.96369 0.91665 0.94947 0.95263 0.94357 0.93775 0.92055 0.99739 0.99809 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.56 71.23 0.68 -0.73 16 2 C -0.09 -1.64 5.86 -19.82 -0.12 -1.75 16 3 C -0.11 -1.89 9.72 22.23 0.22 -1.68 16 4 C -0.16 -3.37 9.98 22.34 0.22 -3.15 16 5 C 0.12 2.96 6.69 22.54 0.15 3.11 16 6 O -0.50 -13.13 13.06 -92.37 -1.21 -14.33 16 7 C -0.12 -3.04 5.78 -19.50 -0.11 -3.16 16 8 C -0.08 -1.71 5.44 -19.60 -0.11 -1.82 16 9 C -0.04 -0.76 3.18 -10.87 -0.03 -0.79 16 10 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 11 C -0.14 -1.95 8.20 71.98 0.59 -1.36 16 12 C -0.14 -2.92 6.17 31.50 0.19 -2.72 16 13 C 0.13 3.25 3.14 44.83 0.14 3.39 16 14 H 0.08 2.08 7.72 -2.39 -0.02 2.06 16 15 N -0.66 -19.35 5.04 -492.03 -2.48 -21.83 16 16 C 0.09 3.08 4.55 86.30 0.39 3.47 16 17 C -0.05 -2.12 0.60 -52.18 -0.03 -2.15 16 18 C -0.10 -4.02 8.06 71.98 0.58 -3.44 16 19 C -0.12 -4.54 7.89 71.98 0.57 -3.98 16 20 C 0.04 2.24 4.04 29.85 0.12 2.36 16 21 C -0.51 -29.15 7.65 25.60 0.20 -28.95 16 22 H 0.06 3.44 5.68 -2.91 -0.02 3.43 16 23 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 24 N -0.94 -57.99 13.28 21.45 0.28 -57.70 16 25 Si 0.95 45.27 29.54 68.60 2.03 47.29 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.84 4.35 -2.39 -0.01 0.83 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.39 7.69 9.06 -74.06 -0.67 7.01 16 35 H 0.08 0.81 5.76 -2.39 -0.01 0.79 16 36 H 0.06 0.81 8.05 -2.39 -0.02 0.79 16 37 H 0.05 0.79 7.98 -2.39 -0.02 0.77 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.54 7.37 -2.38 -0.02 1.53 16 40 H 0.34 9.82 6.40 -89.69 -0.57 9.25 16 41 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 2.44 7.60 -2.38 -0.02 2.42 16 44 H 0.03 1.40 6.61 -2.39 -0.02 1.38 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.04 1.83 6.62 -2.39 -0.02 1.81 16 48 H 0.06 1.99 6.70 -2.39 -0.02 1.98 16 49 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 51 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -67.54 389.77 2.42 -65.11 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.32 Total: 24.51 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 4.11 Total: -43.05 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.19 Total: -79.53 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.21 Total: -14.33 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.54 2.42 -65.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258406434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.680 kcal (2) G-P(sol) polarization free energy of solvation -67.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds