Wall clock time and date at job start Tue Mar 31 2020 11:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38170 * 119.82911 * 2 1 4 4 C 1.38124 * 119.99959 * 180.31336 * 3 2 1 5 5 C 1.38652 * 119.86738 * 359.94264 * 4 3 2 6 6 O 1.35902 * 119.95064 * 180.02562 * 5 4 3 7 7 C 1.38949 * 120.09808 * 0.04073 * 5 4 3 8 8 C 1.38163 * 119.81618 * 359.97438 * 7 5 4 9 9 C 1.51382 * 109.75274 * 179.97438 * 8 7 5 10 10 H 1.08996 * 110.30055 * 136.11470 * 9 8 7 11 11 C 1.53000 * 110.30152 * 258.16647 * 9 8 7 12 12 C 1.54340 * 105.17114 * 17.18755 * 9 8 7 13 13 C 1.51361 * 130.40050 * 179.97438 * 7 5 4 14 14 H 1.08999 * 110.30283 * 43.92947 * 13 7 5 15 15 N 1.46897 * 110.38689 * 281.81449 * 13 7 5 16 16 C 1.46895 * 111.00175 * 89.20848 * 15 13 7 17 17 C 1.52997 * 109.47135 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47792 * 300.00485 * 17 16 15 19 19 C 1.53002 * 109.47123 * 60.00683 * 17 16 15 20 20 C 1.53006 * 109.46942 * 180.02562 * 17 16 15 21 21 C 1.50706 * 109.47072 * 180.02562 * 20 17 16 22 22 H 1.08002 * 119.99624 * 0.02562 * 21 20 17 23 23 C 1.37872 * 120.00092 * 180.02562 * 21 20 17 24 24 N 1.31509 * 119.99847 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46747 * 90.00035 * 25 23 21 27 27 H 1.48494 * 109.47144 * 210.00104 * 25 23 21 28 28 H 1.48497 * 109.47269 * 330.00415 * 25 23 21 29 29 H 1.09003 * 109.47427 * 269.72761 * 1 2 3 30 30 H 1.08996 * 109.47338 * 29.72502 * 1 2 3 31 31 H 1.08999 * 109.47265 * 149.73017 * 1 2 3 32 32 H 1.08002 * 120.00358 * 0.25530 * 3 2 1 33 33 H 1.07994 * 120.06549 * 180.02562 * 4 3 2 34 34 H 0.96693 * 113.99709 * 269.98112 * 6 5 4 35 35 H 1.09002 * 109.47028 * 58.54138 * 11 9 8 36 36 H 1.09000 * 109.46922 * 178.54458 * 11 9 8 37 37 H 1.09003 * 109.47008 * 298.54563 * 11 9 8 38 38 H 1.09002 * 110.82525 * 91.88298 * 12 9 8 39 39 H 1.08998 * 110.82479 * 215.43584 * 12 9 8 40 40 H 1.00899 * 111.00051 * 213.16943 * 15 13 7 41 41 H 1.08998 * 109.47496 * 300.00227 * 16 15 13 42 42 H 1.09000 * 109.46700 * 60.00517 * 16 15 13 43 43 H 1.09000 * 109.46536 * 59.99404 * 18 17 16 44 44 H 1.08994 * 109.47535 * 179.97438 * 18 17 16 45 45 H 1.09006 * 109.47060 * 300.00317 * 18 17 16 46 46 H 1.09007 * 109.46940 * 59.99176 * 19 17 16 47 47 H 1.08994 * 109.47288 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47165 * 299.99974 * 19 17 16 49 49 H 1.08998 * 109.47476 * 300.00365 * 20 17 16 50 50 H 1.09000 * 109.46913 * 60.00774 * 20 17 16 51 51 H 0.97004 * 120.00354 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1986 0.0000 4 6 3.5755 1.2028 -0.0065 5 6 4.2695 0.0025 -0.0119 6 8 5.6285 0.0045 -0.0178 7 6 3.5777 -1.2025 -0.0115 8 6 2.1960 -1.2014 -0.0053 9 6 1.6832 -2.6257 -0.0069 10 1 0.8651 -2.7338 0.7052 11 6 1.2202 -3.0216 -1.4104 12 6 2.8873 -3.4890 0.4255 13 6 4.0888 -2.6272 -0.0171 14 1 4.9127 -2.7362 0.6881 15 7 4.5208 -3.0106 -1.3678 16 6 5.9355 -2.6782 -1.5821 17 6 6.3480 -3.0919 -2.9962 18 6 6.1468 -4.5991 -3.1659 19 6 5.4882 -2.3445 -4.0175 20 6 7.8217 -2.7463 -3.2192 21 6 8.2279 -3.1532 -4.6123 22 1 7.5069 -3.6121 -5.2726 23 6 9.5199 -2.9398 -5.0437 24 7 10.3979 -2.3815 -4.2394 25 14 10.0231 -3.4435 -6.7706 26 1 9.7886 -2.3127 -7.7042 27 1 11.4637 -3.8036 -6.7812 28 1 9.2170 -4.6146 -7.1994 29 1 -0.3634 -0.0049 1.0277 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3634 -0.8875 -0.5180 32 1 1.6516 2.1324 0.0042 33 1 4.1138 2.1390 -0.0061 34 1 6.0179 0.0066 -0.9029 35 1 2.0504 -2.9191 -2.1093 36 1 0.8782 -4.0565 -1.4016 37 1 0.4022 -2.3712 -1.7200 38 1 2.8921 -3.6340 1.5058 39 1 2.8844 -4.4466 -0.0951 40 1 4.3497 -3.9903 -1.5377 41 1 6.0790 -1.6045 -1.4609 42 1 6.5481 -3.2110 -0.8549 43 1 5.0971 -4.8456 -3.0067 44 1 6.4403 -4.8937 -4.1734 45 1 6.7594 -5.1316 -2.4382 46 1 5.6316 -1.2707 -3.8966 47 1 5.7824 -2.6389 -5.0248 48 1 4.4385 -2.5910 -3.8585 49 1 7.9655 -1.6726 -3.0982 50 1 8.4340 -3.2791 -2.4916 51 1 11.3070 -2.2317 -4.5428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258406435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:05 Heat of formation + Delta-G solvation = -41.480929 kcal Electronic energy + Delta-G solvation = -28019.346121 eV Core-core repulsion = 24496.460747 eV Total energy + Delta-G solvation = -3522.885374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77046 -37.76568 -37.43311 -35.97554 -33.44009 -32.31209 -31.52808 -29.90949 -28.27017 -26.89264 -26.37625 -26.33460 -25.17171 -24.08708 -22.37727 -22.05942 -20.56898 -19.86930 -18.24509 -17.36836 -16.43675 -16.21910 -15.58214 -15.30559 -15.18673 -14.60225 -14.52564 -14.02543 -13.84854 -13.69063 -13.55452 -13.33151 -13.04720 -12.70971 -12.64476 -12.51956 -12.10700 -11.97817 -11.93995 -11.74125 -11.66055 -11.39574 -11.13454 -11.04532 -10.96067 -10.83397 -10.75341 -10.60495 -10.50947 -10.29339 -10.23635 -10.09524 -9.68467 -9.03290 -8.83734 -8.60567 -8.31930 -8.28485 -8.08534 -5.96246 -3.96483 1.28050 1.36367 3.33131 3.39904 3.42336 3.56187 4.26756 4.33035 4.47555 4.49286 4.60985 4.85329 4.91473 5.01707 5.05591 5.20168 5.35722 5.39579 5.42999 5.45888 5.54300 5.60539 5.64382 5.71004 5.74038 5.80956 5.84255 5.88907 5.92688 5.96707 6.05552 6.17619 6.25904 6.32221 6.36775 6.40797 6.49030 6.51237 6.65022 6.65698 6.78390 6.80738 6.87834 7.19489 7.22019 7.24835 7.39652 7.67249 7.70525 7.81491 7.85439 8.03813 8.48142 9.08862 9.66454 11.15280 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.003373 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.194930 B = 8298.667220 C = 8867.344398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.107 4.107 4 C -0.147 4.147 5 C 0.123 3.877 6 O -0.500 6.500 7 C -0.091 4.091 8 C -0.066 4.066 9 C -0.043 4.043 10 H 0.074 0.926 11 C -0.143 4.143 12 C -0.120 4.120 13 C 0.127 3.873 14 H 0.054 0.946 15 N -0.672 5.672 16 C 0.071 3.929 17 C -0.059 4.059 18 C -0.128 4.128 19 C -0.115 4.115 20 C 0.035 3.965 21 C -0.507 4.507 22 H 0.059 0.941 23 C 0.055 3.945 24 N -0.897 5.897 25 Si 0.887 3.113 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.275 1.275 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.393 0.607 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.341 0.659 41 H 0.064 0.936 42 H 0.025 0.975 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.054 0.946 48 H 0.042 0.958 49 H 0.014 0.986 50 H 0.013 0.987 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 2.047 10.132 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.166 4.166 5 C 0.078 3.922 6 O -0.313 6.313 7 C -0.093 4.093 8 C -0.067 4.067 9 C -0.061 4.061 10 H 0.092 0.908 11 C -0.200 4.200 12 C -0.158 4.158 13 C 0.018 3.982 14 H 0.072 0.928 15 N -0.305 5.305 16 C -0.057 4.057 17 C -0.059 4.059 18 C -0.186 4.186 19 C -0.172 4.172 20 C -0.003 4.003 21 C -0.545 4.545 22 H 0.077 0.923 23 C -0.146 4.146 24 N -0.537 5.537 25 Si 0.715 3.285 26 H -0.208 1.208 27 H -0.214 1.214 28 H -0.200 1.200 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.252 0.748 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.162 0.838 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.032 0.968 50 H 0.031 0.969 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.181 2.646 10.443 22.876 hybrid contribution 1.164 -0.674 -0.911 1.625 sum -19.017 1.973 9.531 21.363 Atomic orbital electron populations 1.20758 0.91519 1.02635 1.01933 1.19372 0.95781 0.91812 1.01962 1.20728 0.93466 0.97205 1.01135 1.21272 0.94491 0.97491 1.03325 1.18103 0.82959 0.91073 1.00016 1.84809 1.16015 1.96307 1.34156 1.20705 0.94022 0.94361 1.00179 1.20215 0.93222 0.94202 0.99058 1.20506 0.97323 0.90115 0.98143 0.90810 1.21827 1.01996 1.00300 0.95886 1.22598 0.93977 0.98218 1.01023 1.20800 0.96280 0.90217 0.90948 0.92824 1.60577 1.20878 1.24717 1.24378 1.22227 0.85890 1.00140 0.97474 1.20647 0.98777 0.94630 0.91841 1.21760 0.98142 0.96160 1.02510 1.21587 0.97687 0.98796 0.99115 1.19112 0.87917 0.96503 0.96727 1.21231 0.95349 1.39223 0.98737 0.92338 1.25008 0.96888 0.95568 0.97090 1.69963 1.04099 1.43980 1.35622 0.86678 0.77679 0.78860 0.85283 1.20798 1.21406 1.19962 0.91589 0.91816 0.91501 0.85864 0.85526 0.74818 0.90356 0.92720 0.92965 0.90758 0.90088 0.83836 0.91808 0.95678 0.94843 0.91745 0.94094 0.94447 0.92732 0.93911 0.96798 0.96910 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.86 36.01 0.36 -0.57 16 2 C -0.09 -1.00 5.88 -104.55 -0.62 -1.62 16 3 C -0.11 -1.20 9.68 -39.65 -0.38 -1.59 16 4 C -0.15 -1.87 9.98 -39.47 -0.39 -2.26 16 5 C 0.12 1.78 6.68 -39.17 -0.26 1.52 16 6 O -0.50 -7.53 12.52 -19.43 -0.24 -7.78 16 7 C -0.09 -1.26 5.71 -104.06 -0.59 -1.86 16 8 C -0.07 -0.81 5.31 -104.22 -0.55 -1.36 16 9 C -0.04 -0.43 2.83 -90.74 -0.26 -0.69 16 10 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.14 -1.40 9.11 37.16 0.34 -1.06 16 12 C -0.12 -1.23 6.25 -25.33 -0.16 -1.39 16 13 C 0.13 1.66 3.13 -67.84 -0.21 1.45 16 14 H 0.05 0.77 7.82 -51.93 -0.41 0.37 16 15 N -0.67 -9.33 4.85 -106.87 -0.52 -9.85 16 16 C 0.07 1.19 4.49 -3.83 -0.02 1.17 16 17 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 18 C -0.13 -2.32 7.89 37.16 0.29 -2.02 16 19 C -0.11 -2.16 8.06 37.16 0.30 -1.86 16 20 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 21 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 22 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 23 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 24 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 25 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.53 6.39 -51.93 -0.33 0.20 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.39 5.33 7.07 45.56 0.32 5.65 16 35 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.48 6.89 -51.93 -0.36 0.13 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.75 7.30 -51.93 -0.38 0.37 16 40 H 0.34 4.46 6.08 -39.29 -0.24 4.22 16 41 H 0.06 1.08 4.86 -51.93 -0.25 0.83 16 42 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 43 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 44 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 48 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 49 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -30.03 386.77 -9.90 -39.93 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.95 Total: 6.43 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -2.73 Total: -25.12 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.22 Total: -35.78 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.24 Total: -7.78 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.03 -9.90 -39.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258406435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.552 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds