Wall clock time and date at job start Tue Mar 31 2020 11:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38170 * 119.82911 * 2 1 4 4 C 1.38124 * 119.99959 * 180.31336 * 3 2 1 5 5 C 1.38652 * 119.86738 * 359.94264 * 4 3 2 6 6 O 1.35902 * 119.95064 * 180.02562 * 5 4 3 7 7 C 1.38949 * 120.09808 * 0.04073 * 5 4 3 8 8 C 1.38163 * 119.81618 * 359.97438 * 7 5 4 9 9 C 1.51382 * 109.75274 * 179.97438 * 8 7 5 10 10 H 1.08996 * 110.30055 * 136.11470 * 9 8 7 11 11 C 1.53000 * 110.30152 * 258.16647 * 9 8 7 12 12 C 1.54340 * 105.17114 * 17.18755 * 9 8 7 13 13 C 1.51361 * 130.40050 * 179.97438 * 7 5 4 14 14 H 1.08999 * 110.30283 * 43.92947 * 13 7 5 15 15 N 1.46897 * 110.38689 * 281.81449 * 13 7 5 16 16 C 1.46895 * 111.00175 * 89.20848 * 15 13 7 17 17 C 1.52997 * 109.47135 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47792 * 300.00485 * 17 16 15 19 19 C 1.53002 * 109.47123 * 60.00683 * 17 16 15 20 20 C 1.53006 * 109.46942 * 180.02562 * 17 16 15 21 21 C 1.50706 * 109.47072 * 180.02562 * 20 17 16 22 22 H 1.08002 * 119.99624 * 0.02562 * 21 20 17 23 23 C 1.37872 * 120.00092 * 180.02562 * 21 20 17 24 24 N 1.31509 * 119.99847 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46747 * 90.00035 * 25 23 21 27 27 H 1.48494 * 109.47144 * 210.00104 * 25 23 21 28 28 H 1.48497 * 109.47269 * 330.00415 * 25 23 21 29 29 H 1.09003 * 109.47427 * 269.72761 * 1 2 3 30 30 H 1.08996 * 109.47338 * 29.72502 * 1 2 3 31 31 H 1.08999 * 109.47265 * 149.73017 * 1 2 3 32 32 H 1.08002 * 120.00358 * 0.25530 * 3 2 1 33 33 H 1.07994 * 120.06549 * 180.02562 * 4 3 2 34 34 H 0.96693 * 113.99709 * 269.98112 * 6 5 4 35 35 H 1.09002 * 109.47028 * 58.54138 * 11 9 8 36 36 H 1.09000 * 109.46922 * 178.54458 * 11 9 8 37 37 H 1.09003 * 109.47008 * 298.54563 * 11 9 8 38 38 H 1.09002 * 110.82525 * 91.88298 * 12 9 8 39 39 H 1.08998 * 110.82479 * 215.43584 * 12 9 8 40 40 H 1.00899 * 111.00051 * 213.16943 * 15 13 7 41 41 H 1.08998 * 109.47496 * 300.00227 * 16 15 13 42 42 H 1.09000 * 109.46700 * 60.00517 * 16 15 13 43 43 H 1.09000 * 109.46536 * 59.99404 * 18 17 16 44 44 H 1.08994 * 109.47535 * 179.97438 * 18 17 16 45 45 H 1.09006 * 109.47060 * 300.00317 * 18 17 16 46 46 H 1.09007 * 109.46940 * 59.99176 * 19 17 16 47 47 H 1.08994 * 109.47288 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47165 * 299.99974 * 19 17 16 49 49 H 1.08998 * 109.47476 * 300.00365 * 20 17 16 50 50 H 1.09000 * 109.46913 * 60.00774 * 20 17 16 51 51 H 0.97004 * 120.00354 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1986 0.0000 4 6 3.5755 1.2028 -0.0065 5 6 4.2695 0.0025 -0.0119 6 8 5.6285 0.0045 -0.0178 7 6 3.5777 -1.2025 -0.0115 8 6 2.1960 -1.2014 -0.0053 9 6 1.6832 -2.6257 -0.0069 10 1 0.8651 -2.7338 0.7052 11 6 1.2202 -3.0216 -1.4104 12 6 2.8873 -3.4890 0.4255 13 6 4.0888 -2.6272 -0.0171 14 1 4.9127 -2.7362 0.6881 15 7 4.5208 -3.0106 -1.3678 16 6 5.9355 -2.6782 -1.5821 17 6 6.3480 -3.0919 -2.9962 18 6 6.1468 -4.5991 -3.1659 19 6 5.4882 -2.3445 -4.0175 20 6 7.8217 -2.7463 -3.2192 21 6 8.2279 -3.1532 -4.6123 22 1 7.5069 -3.6121 -5.2726 23 6 9.5199 -2.9398 -5.0437 24 7 10.3979 -2.3815 -4.2394 25 14 10.0231 -3.4435 -6.7706 26 1 9.7886 -2.3127 -7.7042 27 1 11.4637 -3.8036 -6.7812 28 1 9.2170 -4.6146 -7.1994 29 1 -0.3634 -0.0049 1.0277 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3634 -0.8875 -0.5180 32 1 1.6516 2.1324 0.0042 33 1 4.1138 2.1390 -0.0061 34 1 6.0179 0.0066 -0.9029 35 1 2.0504 -2.9191 -2.1093 36 1 0.8782 -4.0565 -1.4016 37 1 0.4022 -2.3712 -1.7200 38 1 2.8921 -3.6340 1.5058 39 1 2.8844 -4.4466 -0.0951 40 1 4.3497 -3.9903 -1.5377 41 1 6.0790 -1.6045 -1.4609 42 1 6.5481 -3.2110 -0.8549 43 1 5.0971 -4.8456 -3.0067 44 1 6.4403 -4.8937 -4.1734 45 1 6.7594 -5.1316 -2.4382 46 1 5.6316 -1.2707 -3.8966 47 1 5.7824 -2.6389 -5.0248 48 1 4.4385 -2.5910 -3.8585 49 1 7.9655 -1.6726 -3.0982 50 1 8.4340 -3.2791 -2.4916 51 1 11.3070 -2.2317 -4.5428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258406435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:04 Heat of formation + Delta-G solvation = -58.280401 kcal Electronic energy + Delta-G solvation = -28020.074600 eV Core-core repulsion = 24496.460747 eV Total energy + Delta-G solvation = -3523.613853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71347 -39.11872 -38.55967 -37.09098 -34.95188 -33.87437 -32.61784 -30.80364 -29.43832 -28.65625 -27.89125 -27.22473 -26.54318 -25.20512 -24.12595 -22.95548 -21.49609 -20.84227 -19.69670 -18.60067 -18.32696 -17.36923 -16.72626 -16.54305 -16.29165 -16.17130 -15.65702 -15.37669 -14.94998 -14.73072 -14.54057 -14.48466 -14.32875 -14.08068 -13.84930 -13.58200 -13.46164 -13.38021 -12.89939 -12.80613 -12.70882 -12.68953 -12.56938 -12.47681 -12.27429 -12.24269 -12.13254 -11.94235 -11.83854 -11.76165 -11.48745 -11.38355 -11.23007 -10.85061 -10.69768 -10.50395 -9.57522 -9.27763 -9.22188 -8.13644 -6.20684 0.32536 0.42796 1.40759 1.40985 1.51543 2.43569 2.62023 3.20345 3.23554 3.38018 3.56448 3.61012 3.99527 4.05713 4.17257 4.17960 4.22329 4.27382 4.39356 4.43038 4.54710 4.60745 4.68050 4.76603 4.80166 4.82072 4.88715 4.91451 4.94755 5.01350 5.07008 5.07952 5.10676 5.16073 5.21517 5.23128 5.24757 5.38987 5.46457 5.52076 5.53967 5.57868 5.59238 5.60773 5.66499 5.75873 5.87572 5.93001 5.99488 6.08936 6.37059 6.56878 6.73442 6.94647 7.46740 8.98558 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.003373 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.194930 B = 8298.667220 C = 8867.344398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.108 4.108 4 C -0.159 4.159 5 C 0.090 3.910 6 O -0.515 6.515 7 C -0.114 4.114 8 C -0.072 4.072 9 C -0.038 4.038 10 H 0.095 0.905 11 C -0.139 4.139 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.033 0.967 15 N -0.661 5.661 16 C 0.084 3.916 17 C -0.052 4.052 18 C -0.122 4.122 19 C -0.103 4.103 20 C 0.042 3.958 21 C -0.513 4.513 22 H 0.066 0.934 23 C -0.004 4.004 24 N -0.938 5.938 25 Si 0.955 3.045 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.262 1.262 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.392 0.608 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.348 0.652 41 H 0.057 0.943 42 H 0.011 0.989 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.026 0.974 47 H 0.038 0.962 48 H 0.066 0.934 49 H -0.016 1.016 50 H -0.019 1.019 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.540 1.149 9.747 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.178 4.178 5 C 0.046 3.954 6 O -0.328 6.328 7 C -0.115 4.115 8 C -0.072 4.072 9 C -0.056 4.056 10 H 0.113 0.887 11 C -0.196 4.196 12 C -0.152 4.152 13 C 0.017 3.983 14 H 0.051 0.949 15 N -0.294 5.294 16 C -0.045 4.045 17 C -0.053 4.053 18 C -0.179 4.179 19 C -0.161 4.161 20 C 0.004 3.996 21 C -0.551 4.551 22 H 0.084 0.916 23 C -0.201 4.201 24 N -0.579 5.579 25 Si 0.780 3.220 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.186 1.186 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.250 0.750 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.170 0.830 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.002 0.998 50 H -0.001 1.001 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.661 1.738 10.058 25.769 hybrid contribution 2.200 -0.328 -0.726 2.340 sum -21.461 1.410 9.332 23.445 Atomic orbital electron populations 1.20814 0.89066 1.03647 1.03078 1.19794 0.97597 0.91343 1.00406 1.21086 0.92867 0.98627 1.00023 1.21466 0.95501 0.97212 1.03573 1.18486 0.82585 0.92338 1.02020 1.84794 1.17150 1.96490 1.34345 1.20882 0.95145 0.94239 1.01263 1.20563 0.92522 0.95748 0.98413 1.20550 0.97611 0.88518 0.98949 0.88735 1.21790 1.01322 1.01602 0.94900 1.22626 0.92390 0.98286 1.01886 1.20849 0.96881 0.90969 0.89624 0.94933 1.60505 1.18302 1.25147 1.25486 1.21927 0.87639 0.99558 0.95366 1.20478 0.95185 0.95959 0.93635 1.21678 1.00373 0.94625 1.01229 1.21470 0.98808 0.98002 0.97789 1.18986 0.91381 0.94039 0.95158 1.21616 0.95514 1.38354 0.99605 0.91577 1.25908 0.97136 0.95748 1.01290 1.70111 1.04461 1.45560 1.37782 0.85597 0.77236 0.78913 0.80233 1.20174 1.21357 1.18587 0.90230 0.90572 0.90793 0.83248 0.84939 0.74965 0.92529 0.90939 0.92352 0.89678 0.88579 0.83031 0.92494 0.97127 0.91175 0.93480 0.94618 0.95434 0.94290 0.91473 0.99757 1.00083 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.86 71.24 0.70 -0.72 16 2 C -0.09 -1.83 5.88 -19.82 -0.12 -1.94 16 3 C -0.11 -2.24 9.68 22.23 0.22 -2.03 16 4 C -0.16 -4.04 9.98 22.34 0.22 -3.82 16 5 C 0.09 2.68 6.68 22.54 0.15 2.83 16 6 O -0.51 -16.68 12.52 -92.44 -1.16 -17.84 16 7 C -0.11 -3.12 5.71 -19.50 -0.11 -3.23 16 8 C -0.07 -1.61 5.31 -19.60 -0.10 -1.71 16 9 C -0.04 -0.65 2.83 -10.87 -0.03 -0.68 16 10 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 11 C -0.14 -2.25 9.11 71.98 0.66 -1.60 16 12 C -0.11 -2.06 6.25 31.50 0.20 -1.86 16 13 C 0.13 3.23 3.13 44.83 0.14 3.37 16 14 H 0.03 0.97 7.82 -2.39 -0.02 0.95 16 15 N -0.66 -17.86 4.85 -492.03 -2.38 -20.24 16 16 C 0.08 2.90 4.49 86.30 0.39 3.29 16 17 C -0.05 -2.04 0.60 -52.18 -0.03 -2.07 16 18 C -0.12 -4.30 7.89 71.98 0.57 -3.74 16 19 C -0.10 -3.87 8.06 71.98 0.58 -3.29 16 20 C 0.04 2.17 4.04 29.85 0.12 2.29 16 21 C -0.51 -28.32 7.65 25.60 0.20 -28.12 16 22 H 0.07 3.49 5.68 -2.91 -0.02 3.48 16 23 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 24 N -0.94 -57.67 13.29 21.44 0.28 -57.38 16 25 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 31 H 0.07 0.87 6.39 -2.39 -0.02 0.86 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.39 11.83 7.07 -74.06 -0.52 11.31 16 35 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.87 6.89 -2.39 -0.02 0.86 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.45 7.30 -2.39 -0.02 1.43 16 40 H 0.35 8.40 6.08 -89.69 -0.55 7.85 16 41 H 0.06 2.05 4.86 -2.39 -0.01 2.04 16 42 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 43 H 0.07 1.95 6.57 -2.39 -0.02 1.94 16 44 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 45 H 0.03 1.27 8.14 -2.38 -0.02 1.26 16 46 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 48 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 49 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 51 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -67.17 386.77 2.84 -64.33 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.14 Total: 27.35 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 4.20 Total: -42.81 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.10 Total: -77.62 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.16 Total: -17.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.17 2.84 -64.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258406435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.053 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds