Wall clock time and date at job start Tue Mar 31 2020 11:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38173 * 119.83337 * 2 1 4 4 C 1.38121 * 120.00075 * 179.97438 * 3 2 1 5 5 C 1.38643 * 119.86701 * 0.02562 * 4 3 2 6 6 O 1.35906 * 119.94927 * 179.97438 * 5 4 3 7 7 C 1.38944 * 120.09980 * 359.97438 * 5 4 3 8 8 C 1.38160 * 119.82055 * 0.02562 * 7 5 4 9 9 C 1.51377 * 109.75359 * 180.02562 * 8 7 5 10 10 H 1.09003 * 110.29858 * 223.88533 * 9 8 7 11 11 C 1.53002 * 110.30652 * 101.83584 * 9 8 7 12 12 C 1.54343 * 105.17226 * 342.81052 * 9 8 7 13 13 C 1.51369 * 130.39946 * 180.02562 * 7 5 4 14 14 H 1.08999 * 110.30499 * 78.26411 * 13 7 5 15 15 N 1.46898 * 110.30248 * 316.10873 * 13 7 5 16 16 C 1.46899 * 111.00045 * 154.52475 * 15 13 7 17 17 C 1.52995 * 109.47424 * 185.42927 * 16 15 13 18 18 C 1.52999 * 109.47539 * 300.00074 * 17 16 15 19 19 C 1.53010 * 109.46892 * 60.00197 * 17 16 15 20 20 C 1.53004 * 109.47115 * 180.02562 * 17 16 15 21 21 C 1.50698 * 109.46708 * 180.02562 * 20 17 16 22 22 H 1.08003 * 120.00529 * 359.97438 * 21 20 17 23 23 C 1.37881 * 119.99976 * 180.02562 * 21 20 17 24 24 N 1.31518 * 119.99532 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00327 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47130 * 59.99796 * 25 23 21 27 27 H 1.48501 * 109.47169 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46759 * 299.99686 * 25 23 21 29 29 H 1.09000 * 109.47170 * 269.96112 * 1 2 3 30 30 H 1.08997 * 109.47017 * 29.96224 * 1 2 3 31 31 H 1.09002 * 109.47018 * 149.95880 * 1 2 3 32 32 H 1.08000 * 120.00006 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.06446 * 180.02562 * 4 3 2 34 34 H 0.96700 * 113.99782 * 270.02167 * 6 5 4 35 35 H 1.09000 * 109.46809 * 62.77302 * 11 9 8 36 36 H 1.08994 * 109.46917 * 182.77413 * 11 9 8 37 37 H 1.08996 * 109.46487 * 302.77508 * 11 9 8 38 38 H 1.09002 * 110.82099 * 144.56933 * 12 9 8 39 39 H 1.09003 * 110.82577 * 268.11875 * 12 9 8 40 40 H 1.00905 * 111.00099 * 278.47351 * 15 13 7 41 41 H 1.09002 * 109.46946 * 305.43747 * 16 15 13 42 42 H 1.09005 * 109.47333 * 65.42975 * 16 15 13 43 43 H 1.09004 * 109.46871 * 59.99902 * 18 17 16 44 44 H 1.09000 * 109.47368 * 179.97438 * 18 17 16 45 45 H 1.08999 * 109.47034 * 300.00038 * 18 17 16 46 46 H 1.09002 * 109.46815 * 59.99585 * 19 17 16 47 47 H 1.09001 * 109.47070 * 179.97438 * 19 17 16 48 48 H 1.08995 * 109.47012 * 299.99944 * 19 17 16 49 49 H 1.09003 * 109.46829 * 299.99803 * 20 17 16 50 50 H 1.08997 * 109.47237 * 60.00709 * 20 17 16 51 51 H 0.97007 * 120.00068 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5756 1.2026 0.0005 5 6 4.2695 0.0024 0.0005 6 8 5.6286 0.0044 0.0005 7 6 3.5776 -1.2025 0.0005 8 6 2.1960 -1.2014 0.0000 9 6 1.6833 -2.6257 0.0008 10 1 0.8622 -2.7324 -0.7082 11 6 1.2260 -3.0247 1.4053 12 6 2.8856 -3.4881 -0.4384 13 6 4.0888 -2.6273 0.0010 14 1 4.4118 -2.9129 1.0021 15 7 5.1958 -2.7720 -0.9537 16 6 6.0779 -3.8831 -0.5725 17 6 7.2879 -3.9179 -1.5081 18 6 6.8129 -4.1151 -2.9491 19 6 8.0543 -2.5980 -1.3998 20 6 8.2062 -5.0756 -1.1114 21 6 9.3983 -5.1094 -2.0326 22 1 9.4915 -4.3785 -2.8224 23 6 10.3697 -6.0740 -1.8680 24 7 10.2560 -6.9642 -0.9066 25 14 11.8478 -6.1155 -3.0095 26 1 12.5921 -4.8349 -2.9023 27 1 12.7391 -7.2392 -2.6245 28 1 11.3876 -6.3050 -4.4086 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3633 0.8903 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 1.6517 2.1323 -0.0004 33 1 4.1139 2.1389 0.0010 34 1 6.0219 0.0053 -0.8829 35 1 0.3938 -2.3903 1.7102 36 1 0.9060 -4.0666 1.4009 37 1 2.0524 -2.9013 2.1051 38 1 2.8847 -4.4469 0.0802 39 1 2.8859 -3.6309 -1.5191 40 1 4.8493 -2.8917 -1.8938 41 1 6.4162 -3.7427 0.4542 42 1 5.5319 -4.8235 -0.6495 43 1 6.1585 -3.2906 -3.2320 44 1 7.6750 -4.1394 -3.6157 45 1 6.2669 -5.0554 -3.0262 46 1 8.3926 -2.4576 -0.3732 47 1 8.9167 -2.6230 -2.0661 48 1 7.3999 -1.7736 -1.6827 49 1 8.5447 -4.9355 -0.0847 50 1 7.6600 -6.0156 -1.1889 51 1 10.9396 -7.6427 -0.7905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258406436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:07 Heat of formation + Delta-G solvation = -44.786492 kcal Electronic energy + Delta-G solvation = -27530.387008 eV Core-core repulsion = 24007.358295 eV Total energy + Delta-G solvation = -3523.028714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77898 -37.83326 -37.25569 -35.99447 -33.61761 -32.30792 -31.57241 -29.99290 -28.01644 -26.85625 -26.38850 -26.27985 -25.30127 -24.13984 -22.33217 -21.99694 -20.82909 -19.91773 -18.00859 -17.56564 -16.29464 -16.23801 -15.71517 -15.16780 -14.95704 -14.73611 -14.52305 -14.08785 -13.88128 -13.73653 -13.60089 -13.32194 -12.89082 -12.86167 -12.60909 -12.50399 -12.33369 -12.02796 -11.97074 -11.77677 -11.71327 -11.43325 -11.21360 -11.05479 -10.95142 -10.90593 -10.79049 -10.72145 -10.45800 -10.29883 -10.21328 -10.09859 -9.64056 -8.98555 -8.82566 -8.66471 -8.33159 -8.29216 -8.03114 -5.93982 -3.93990 1.22698 1.26823 3.35918 3.40608 3.42711 3.51802 4.22522 4.35473 4.43257 4.49535 4.57641 4.77847 4.84869 4.95096 5.06066 5.09673 5.26668 5.30708 5.36652 5.41770 5.46678 5.49240 5.61197 5.66441 5.73592 5.74991 5.80090 5.85098 5.89864 5.92392 6.02393 6.10393 6.11570 6.27640 6.31167 6.36527 6.45849 6.54944 6.57438 6.68755 6.81921 6.82795 6.87299 7.24814 7.26277 7.30064 7.43414 7.69242 7.73999 7.89168 7.93289 8.06509 8.50957 9.11286 9.68594 11.17680 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.002915 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.346647 B = 9601.752862 C =10303.611909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.107 4.107 4 C -0.153 4.153 5 C 0.140 3.860 6 O -0.487 6.487 7 C -0.101 4.101 8 C -0.078 4.078 9 C -0.048 4.048 10 H 0.077 0.923 11 C -0.139 4.139 12 C -0.147 4.147 13 C 0.133 3.867 14 H 0.089 0.911 15 N -0.673 5.673 16 C 0.072 3.928 17 C -0.056 4.056 18 C -0.127 4.127 19 C -0.112 4.112 20 C 0.034 3.966 21 C -0.506 4.506 22 H 0.058 0.942 23 C 0.054 3.946 24 N -0.898 5.898 25 Si 0.887 3.113 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.278 1.278 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.392 0.608 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.338 0.662 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.052 0.948 48 H 0.040 0.960 49 H 0.014 0.986 50 H 0.011 0.989 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 13.465 1.537 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.171 4.171 5 C 0.094 3.906 6 O -0.298 6.298 7 C -0.102 4.102 8 C -0.079 4.079 9 C -0.067 4.067 10 H 0.096 0.904 11 C -0.197 4.197 12 C -0.186 4.186 13 C 0.023 3.977 14 H 0.107 0.893 15 N -0.303 5.303 16 C -0.056 4.056 17 C -0.056 4.056 18 C -0.185 4.185 19 C -0.169 4.169 20 C -0.003 4.003 21 C -0.545 4.545 22 H 0.076 0.924 23 C -0.146 4.146 24 N -0.538 5.538 25 Si 0.716 3.284 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.204 1.204 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.249 0.751 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.157 0.843 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.033 0.967 50 H 0.030 0.970 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.448 13.772 2.524 24.782 hybrid contribution 0.478 -0.873 -1.268 1.611 sum -19.970 12.899 1.257 23.807 Atomic orbital electron populations 1.20729 0.91530 1.02439 1.01997 1.19351 0.95753 0.91774 1.02194 1.20732 0.93560 0.97133 1.01102 1.21336 0.94458 0.97663 1.03692 1.18049 0.83510 0.90475 0.98533 1.84761 1.15115 1.96245 1.33632 1.20867 0.93485 0.94934 1.00920 1.20244 0.93487 0.94185 0.99968 1.20536 0.97885 0.90346 0.97891 0.90433 1.21756 1.01314 1.01070 0.95519 1.23149 0.95016 0.98906 1.01512 1.20935 0.89680 0.89501 0.97610 0.89262 1.60473 1.18397 1.46720 1.04726 1.22127 0.93604 0.90000 0.99873 1.20603 0.93660 0.97982 0.93399 1.21755 1.00462 0.98685 0.97573 1.21560 0.98957 0.95577 1.00819 1.19114 0.93206 0.91438 0.96586 1.21203 1.05380 1.13105 1.14779 0.92379 1.25016 0.98204 0.95862 0.95511 1.69960 1.34859 1.17195 1.31785 0.86736 0.82980 0.77471 0.81260 1.20319 1.21468 1.20392 0.91493 0.91860 0.91732 0.85922 0.85569 0.75069 0.92513 0.92170 0.92360 0.90348 0.90786 0.84287 0.91606 0.95930 0.94872 0.91882 0.94240 0.94130 0.92927 0.94069 0.96744 0.97023 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.86 36.01 0.36 -0.46 16 2 C -0.09 -0.92 5.88 -104.55 -0.62 -1.53 16 3 C -0.11 -1.07 9.68 -39.65 -0.38 -1.45 16 4 C -0.15 -1.71 9.98 -39.47 -0.39 -2.11 16 5 C 0.14 1.81 6.69 -39.17 -0.26 1.55 16 6 O -0.49 -6.66 13.06 -19.44 -0.25 -6.91 16 7 C -0.10 -1.28 5.78 -104.06 -0.60 -1.88 16 8 C -0.08 -0.87 5.31 -104.22 -0.55 -1.42 16 9 C -0.05 -0.46 2.96 -90.73 -0.27 -0.73 16 10 H 0.08 0.67 7.62 -51.93 -0.40 0.28 16 11 C -0.14 -1.21 9.15 37.16 0.34 -0.87 16 12 C -0.15 -1.57 6.24 -25.33 -0.16 -1.73 16 13 C 0.13 1.70 3.13 -67.84 -0.21 1.49 16 14 H 0.09 1.26 7.73 -51.93 -0.40 0.86 16 15 N -0.67 -9.32 5.04 -106.86 -0.54 -9.86 16 16 C 0.07 1.22 4.55 -3.83 -0.02 1.20 16 17 C -0.06 -1.09 0.60 -154.50 -0.09 -1.18 16 18 C -0.13 -2.31 7.88 37.16 0.29 -2.02 16 19 C -0.11 -2.11 8.07 37.16 0.30 -1.82 16 20 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 21 C -0.51 -13.83 7.65 -34.44 -0.26 -14.09 16 22 H 0.06 1.54 5.68 -52.48 -0.30 1.24 16 23 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 24 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 25 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 7.28 -51.93 -0.38 0.07 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.39 4.40 9.02 45.56 0.41 4.81 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 39 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 40 H 0.34 4.51 6.39 -39.29 -0.25 4.26 16 41 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.51 6.70 -51.93 -0.35 0.16 16 44 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.05 1.07 6.62 -51.93 -0.34 0.73 16 48 H 0.04 0.67 7.56 -51.93 -0.39 0.27 16 49 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -30.19 395.61 -10.02 -40.21 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.16 Total: 5.06 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -2.75 Total: -24.87 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.20 Total: -36.09 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.25 Total: -6.91 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.19 -10.02 -40.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258406436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.577 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds