Wall clock time and date at job start Tue Mar 31 2020 11:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38386 * 119.85319 * 265.25233 * 3 2 1 5 5 C 1.37928 * 120.14668 * 180.29257 * 4 3 2 6 6 C 1.39600 * 119.85418 * 359.72756 * 5 4 3 7 7 C 1.47839 * 120.14742 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00066 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00238 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00224 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47120 * 299.99986 * 11 10 9 13 13 C 1.52998 * 109.47121 * 60.00146 * 11 10 9 14 14 C 1.52996 * 109.47170 * 179.97438 * 11 10 9 15 15 C 1.50711 * 109.47121 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99820 * 359.97438 * 15 14 11 17 17 C 1.37876 * 119.99707 * 180.02562 * 15 14 11 18 18 N 1.31509 * 120.00497 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99699 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46845 * 60.00083 * 19 17 15 21 21 H 1.48497 * 109.47142 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47219 * 300.00559 * 19 17 15 23 23 C 1.39563 * 119.70871 * 359.97438 * 6 5 4 24 24 C 1.37983 * 119.85110 * 0.02562 * 23 6 5 25 25 C 1.50698 * 119.92312 * 179.97438 * 24 23 6 26 26 C 1.53006 * 109.47184 * 264.99735 * 25 24 23 27 27 H 1.08998 * 109.47213 * 300.00018 * 1 2 3 28 28 H 1.09002 * 109.47516 * 60.00432 * 1 2 3 29 29 H 1.09006 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47213 * 239.99982 * 2 1 3 31 31 H 1.09002 * 109.47516 * 119.99568 * 2 1 3 32 32 H 1.08009 * 119.92624 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.07969 * 179.70905 * 5 4 3 34 34 H 0.97001 * 119.99581 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47144 * 299.99783 * 10 9 7 36 36 H 1.08996 * 109.47163 * 60.00031 * 10 9 7 37 37 H 1.09005 * 109.47082 * 60.00301 * 12 11 10 38 38 H 1.09000 * 109.46934 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47248 * 299.99862 * 12 11 10 40 40 H 1.08997 * 109.47299 * 60.00015 * 13 11 10 41 41 H 1.09000 * 109.47468 * 179.97438 * 13 11 10 42 42 H 1.09005 * 109.47258 * 299.99807 * 13 11 10 43 43 H 1.08999 * 109.47658 * 299.99995 * 14 11 10 44 44 H 1.08996 * 109.47157 * 60.00164 * 14 11 10 45 45 H 0.96999 * 120.00118 * 179.97438 * 18 17 15 46 46 H 1.07991 * 120.07337 * 180.02562 * 23 6 5 47 47 H 1.09001 * 109.46665 * 145.00124 * 25 24 23 48 48 H 1.08993 * 109.47304 * 24.99680 * 25 24 23 49 49 H 1.09001 * 109.46801 * 300.00442 * 26 25 24 50 50 H 1.09001 * 109.46998 * 60.00038 * 26 25 24 51 51 H 1.09000 * 109.47050 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0372 -1.1961 5 6 2.8216 3.3354 -1.2027 6 6 2.9615 4.0296 0.0004 7 6 3.4598 5.4214 0.0009 8 8 3.5802 6.0235 1.0499 9 7 3.7808 6.0227 -1.1619 10 6 4.2741 7.4021 -1.1614 11 6 4.5626 7.8410 -2.5984 12 6 5.6212 6.9210 -3.2099 13 6 3.2773 7.7594 -3.4244 14 6 5.0772 9.2819 -2.5981 15 6 5.3608 9.7144 -4.0136 16 1 5.1913 9.0299 -4.8316 17 6 5.8375 10.9836 -4.2642 18 7 6.0453 11.8166 -3.2680 19 14 6.1897 11.5195 -6.0187 20 1 4.9422 11.4401 -6.8203 21 1 6.6902 12.9176 -6.0182 22 1 7.2171 10.6266 -6.6122 23 6 2.6278 3.4042 1.2026 24 6 2.1627 2.1051 1.1951 25 6 1.8024 1.4281 2.4924 26 6 2.9967 0.6116 2.9904 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2468 1.4991 -2.1262 33 1 3.0780 3.8137 -2.1364 34 1 3.6844 5.5424 -1.9990 35 1 3.5201 8.0575 -0.7254 36 1 5.1900 7.4603 -0.5734 37 1 5.2541 5.8947 -3.2103 38 1 5.8263 7.2335 -4.2338 39 1 6.5368 6.9792 -2.6215 40 1 2.5232 8.4148 -2.9888 41 1 3.4827 8.0725 -4.4481 42 1 2.9102 6.7330 -3.4248 43 1 4.3228 9.9371 -2.1626 44 1 5.9927 9.3405 -2.0095 45 1 6.3811 12.7094 -3.4443 46 1 2.7333 3.9359 2.1367 47 1 0.9512 0.7664 2.3326 48 1 1.5424 2.1818 3.2356 49 1 3.2569 -0.1420 2.2472 50 1 3.8480 1.2734 3.1501 51 1 2.7360 0.1216 3.9285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261120187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:56 Heat of formation + Delta-G solvation = -69.318089 kcal Electronic energy + Delta-G solvation = -26385.893889 eV Core-core repulsion = 22861.801405 eV Total energy + Delta-G solvation = -3524.092483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47581 -40.16683 -38.62652 -35.78078 -35.19962 -34.32807 -33.91329 -30.90414 -30.32129 -29.06305 -27.98319 -27.69170 -25.74737 -25.04152 -24.16105 -22.67017 -22.47916 -20.87431 -19.91383 -18.50917 -18.32171 -17.45395 -16.65867 -16.49549 -16.44170 -16.30416 -15.78630 -15.22878 -14.95187 -14.77423 -14.75486 -14.57650 -14.45372 -14.27798 -14.13650 -13.94687 -13.83016 -13.45190 -13.20837 -12.85776 -12.78206 -12.75435 -12.62076 -12.47912 -12.34242 -12.23866 -12.11814 -12.03538 -12.01549 -11.70508 -11.55840 -11.44757 -11.23207 -10.93338 -10.82172 -10.50800 -10.20608 -9.82118 -9.56687 -8.13742 -6.21886 -0.16399 0.38794 1.42732 1.45027 1.52201 1.80508 2.12882 2.45051 2.82764 3.20497 3.63191 3.72068 3.86421 3.94663 3.96114 4.05245 4.13341 4.18724 4.22593 4.41830 4.48209 4.54347 4.55301 4.60410 4.66561 4.68696 4.74342 4.78435 4.89181 4.93593 5.02049 5.06623 5.07212 5.10337 5.10577 5.12815 5.23384 5.31808 5.35350 5.35615 5.43439 5.47522 5.48820 5.50998 5.51320 5.55791 5.67035 5.78632 5.89174 5.96215 6.29439 6.51067 6.92841 7.15550 7.45804 8.98620 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.002302 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.671402 B =12162.267894 C =12769.312123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.121 4.121 5 C -0.087 4.087 6 C -0.153 4.153 7 C 0.548 3.452 8 O -0.590 6.590 9 N -0.702 5.702 10 C 0.140 3.860 11 C -0.064 4.064 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.040 3.960 15 C -0.513 4.513 16 H 0.074 0.926 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.074 4.074 24 C -0.092 4.092 25 C -0.087 4.087 26 C -0.147 4.147 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.412 0.588 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.069 0.931 43 H -0.014 1.014 44 H -0.014 1.014 45 H 0.259 0.741 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.042 0.958 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 -29.507 4.615 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.053 4.053 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.156 4.156 7 C 0.338 3.662 8 O -0.472 6.472 9 N -0.355 5.355 10 C 0.016 3.984 11 C -0.064 4.064 12 C -0.180 4.180 13 C -0.180 4.180 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.580 5.580 19 Si 0.785 3.215 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.191 1.191 23 C -0.093 4.093 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.204 4.204 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.251 0.749 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.134 0.866 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.803 -28.895 5.357 31.311 hybrid contribution 0.578 1.469 -0.693 1.724 sum -10.225 -27.426 4.664 29.640 Atomic orbital electron populations 1.21766 0.93969 1.02707 1.02054 1.20739 0.96682 0.90808 1.04446 1.20317 0.95737 0.97242 0.92047 1.21320 0.99288 0.94263 0.99019 1.21504 0.97168 0.95280 0.96591 1.19827 1.06781 0.93018 0.96000 1.18851 0.76922 0.87081 0.83378 1.90730 1.56125 1.67359 1.32988 1.45879 1.65636 1.14794 1.09149 1.21270 0.97768 0.81596 0.97725 1.20706 0.96975 0.96622 0.92100 1.21707 0.97256 0.97858 1.01150 1.21708 0.95241 1.00770 1.00258 1.18973 0.93915 0.90711 0.96201 1.21551 1.41967 0.98113 0.93514 0.90791 1.25975 0.95986 0.97264 1.01116 1.70118 1.47325 1.07302 1.33257 0.85573 0.78943 0.76951 0.80010 1.19074 1.21794 1.19090 1.21156 0.96297 0.94837 0.97035 1.19912 0.99768 0.92988 0.96526 1.20658 0.99672 0.99499 0.92610 1.21767 0.97089 0.99726 1.01784 0.92847 0.92753 0.90768 0.89360 0.89563 0.82508 0.83861 0.74866 0.93511 0.93516 0.91266 0.92210 0.94442 0.94446 0.92205 0.91266 0.99600 0.99604 0.93185 0.86595 0.88808 0.91342 0.91722 0.93908 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.72 71.98 0.70 -0.48 16 2 C -0.09 -0.78 5.37 29.85 0.16 -0.62 16 3 C -0.05 -0.77 5.14 -19.80 -0.10 -0.88 16 4 C -0.12 -1.76 9.66 22.23 0.21 -1.55 16 5 C -0.09 -1.62 9.54 22.53 0.21 -1.41 16 6 C -0.15 -3.95 5.87 -20.09 -0.12 -4.07 16 7 C 0.55 18.11 7.77 86.78 0.67 18.79 16 8 O -0.59 -24.67 16.35 -3.89 -0.06 -24.73 16 9 N -0.70 -21.10 4.91 -465.99 -2.29 -23.38 16 10 C 0.14 5.26 4.56 86.38 0.39 5.65 16 11 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 12 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 13 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 14 C 0.04 2.04 4.04 29.85 0.12 2.16 16 15 C -0.51 -27.56 7.65 25.60 0.20 -27.36 16 16 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 17 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 18 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 19 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.07 -1.82 9.22 22.53 0.21 -1.62 16 24 C -0.09 -1.66 5.13 -19.90 -0.10 -1.76 16 25 C -0.09 -1.17 5.38 29.85 0.16 -1.01 16 26 C -0.15 -1.73 9.72 71.98 0.70 -1.04 16 27 H 0.05 0.49 6.78 -2.39 -0.02 0.47 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.09 0.55 8.05 -2.39 -0.02 0.53 16 31 H 0.09 0.64 5.57 -2.39 -0.01 0.63 16 32 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.14 2.05 6.41 -2.91 -0.02 2.03 16 34 H 0.41 9.61 4.20 -92.71 -0.39 9.22 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.76 6.86 -2.38 -0.02 1.75 16 38 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 42 H 0.07 1.76 6.86 -2.38 -0.02 1.74 16 43 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 44 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.12 3.17 7.65 -2.92 -0.02 3.15 16 47 H 0.09 0.93 5.61 -2.39 -0.01 0.91 16 48 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 49 H 0.06 0.66 6.76 -2.39 -0.02 0.65 16 50 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -71.67 395.76 5.50 -66.17 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.52 Total: 18.21 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 5.01 Total: -24.68 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.00 Total: -80.61 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.06 Total: -24.73 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -71.67 5.50 -66.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261120187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.144 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds