Wall clock time and date at job start Tue Mar 31 2020 11:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47474 * 2 1 4 4 C 1.52997 * 109.47232 * 185.05883 * 3 2 1 5 5 C 1.52995 * 109.47303 * 296.06664 * 4 3 2 6 6 C 1.52994 * 109.47001 * 305.06669 * 3 2 1 7 7 C 1.53005 * 109.47001 * 180.02562 * 6 3 2 8 8 C 1.53000 * 109.46776 * 299.99540 * 7 6 3 9 9 N 1.46504 * 109.46865 * 180.02562 * 8 7 6 10 10 C 1.39674 * 119.99502 * 155.00270 * 9 8 7 11 11 C 1.38997 * 120.04418 * 359.72010 * 10 9 8 12 12 C 1.38149 * 120.06485 * 180.30201 * 11 10 9 13 13 C 1.38168 * 120.14223 * 359.95517 * 12 11 10 14 14 C 1.38917 * 120.07978 * 0.04449 * 13 12 11 15 15 O 1.35751 * 120.03585 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00276 * 174.15011 * 15 14 13 17 17 H 1.08000 * 119.99978 * 5.09462 * 16 15 14 18 18 C 1.38648 * 119.99816 * 185.09661 * 16 15 14 19 19 N 1.31561 * 120.00485 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99771 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47161 * 59.99894 * 20 18 16 22 22 H 1.48503 * 109.46835 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47028 * 299.99601 * 20 18 16 24 24 C 1.38753 * 120.03326 * 179.97438 * 10 9 8 25 25 C 1.52997 * 109.47198 * 59.99955 * 8 7 6 26 26 C 1.52997 * 109.47264 * 300.00174 * 25 8 7 27 27 H 1.09002 * 109.47005 * 65.08184 * 1 2 3 28 28 H 1.09000 * 109.47121 * 185.08350 * 1 2 3 29 29 H 1.08996 * 109.47251 * 305.08577 * 1 2 3 30 30 H 1.08996 * 109.47432 * 240.00275 * 2 1 3 31 31 H 1.09001 * 109.47396 * 120.00248 * 2 1 3 32 32 H 1.09004 * 109.47037 * 56.07028 * 4 3 2 33 33 H 1.09004 * 109.47238 * 176.06363 * 4 3 2 34 34 H 1.08997 * 109.47157 * 304.46419 * 5 4 3 35 35 H 1.08999 * 109.47603 * 64.46874 * 5 4 3 36 36 H 1.09007 * 109.47229 * 184.47041 * 5 4 3 37 37 H 1.08996 * 109.47673 * 59.99353 * 6 3 2 38 38 H 1.09002 * 109.47197 * 299.99338 * 6 3 2 39 39 H 1.09000 * 109.47258 * 179.97438 * 7 6 3 40 40 H 1.09004 * 109.47227 * 59.99528 * 7 6 3 41 41 H 1.09004 * 109.47233 * 299.99985 * 8 7 6 42 42 H 0.96996 * 119.99757 * 334.99871 * 9 8 7 43 43 H 1.08005 * 119.96873 * 0.27407 * 11 10 9 44 44 H 1.08003 * 119.93239 * 179.97438 * 12 11 10 45 45 H 1.08004 * 119.96345 * 180.02562 * 13 12 11 46 46 H 0.96998 * 120.00319 * 180.02562 * 19 18 16 47 47 H 1.07992 * 120.07321 * 359.70096 * 24 10 9 48 48 H 1.09004 * 109.47005 * 59.99890 * 25 8 7 49 49 H 1.09004 * 109.47198 * 179.97438 * 25 8 7 50 50 H 1.09004 * 109.46877 * 299.99794 * 26 25 8 51 51 H 1.09000 * 109.47229 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4443 -0.1272 5 6 4.1799 0.7733 1.1024 6 6 1.4287 2.1996 -1.1806 7 6 1.9393 3.6419 -1.1810 8 6 1.5364 4.3258 0.1270 9 7 2.0248 5.7071 0.1264 10 6 1.3851 6.6742 0.9050 11 6 0.2815 6.3285 1.6762 12 6 -0.3553 7.2861 2.4416 13 6 0.1026 8.5897 2.4440 14 6 1.2050 8.9418 1.6755 15 8 1.6538 10.2229 1.6781 16 6 2.7972 10.4724 1.0084 17 1 3.2682 9.6888 0.4334 18 6 3.3682 11.7349 1.0578 19 7 2.7948 12.6893 1.7586 20 14 4.9518 12.0807 0.1294 21 1 4.7383 11.8400 -1.3203 22 1 5.3523 13.4946 0.3433 23 1 6.0241 11.1822 0.6277 24 6 1.8473 7.9825 0.9055 25 6 2.1476 3.5687 1.3077 26 6 1.6371 2.1264 1.3080 27 1 -0.3633 0.4330 -0.9320 28 1 -0.3633 -1.0236 0.0911 29 1 -0.3633 0.5907 0.8409 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8552 0.8964 -1.0236 33 1 3.9223 2.4717 -0.1975 34 1 3.8259 1.2728 2.0042 35 1 3.8859 -0.2760 1.1291 36 1 5.2663 0.8450 1.0501 37 1 0.3425 2.1983 -1.0900 38 1 1.7161 1.7127 -2.1125 39 1 1.5042 4.1812 -2.0224 40 1 3.0256 3.6428 -1.2719 41 1 0.4502 4.3249 0.2179 42 1 2.7924 5.9498 -0.4146 43 1 -0.0787 5.3103 1.6766 44 1 -1.2129 7.0152 3.0397 45 1 -0.3973 9.3359 3.0438 46 1 3.1941 13.5726 1.7929 47 1 2.7049 8.2537 0.3078 48 1 3.2339 3.5696 1.2168 49 1 1.8610 4.0562 2.2396 50 1 0.5509 2.1255 1.3989 51 1 2.0729 1.5869 2.1489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308677317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:02 Heat of formation + Delta-G solvation = -29.883922 kcal Electronic energy + Delta-G solvation = -27128.136583 eV Core-core repulsion = 23605.754093 eV Total energy + Delta-G solvation = -3522.382490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43767 -38.90713 -37.05762 -35.22427 -32.60437 -32.25158 -32.04734 -30.89039 -29.21651 -28.35638 -26.85312 -25.20345 -24.29774 -23.31272 -22.63086 -21.74552 -21.26244 -20.14119 -18.21512 -17.81455 -17.14062 -15.93473 -15.44408 -15.24358 -15.08704 -14.86476 -14.76132 -14.61552 -14.22212 -13.87282 -13.59293 -13.34195 -13.22335 -12.99220 -12.76780 -12.46837 -12.32456 -12.20148 -12.13900 -11.90408 -11.81685 -11.78777 -11.58704 -11.38417 -11.26026 -10.97057 -10.81602 -10.74376 -10.65442 -10.54120 -10.36979 -10.20760 -10.11986 -10.02702 -9.33086 -9.29085 -8.71127 -7.29812 -6.69603 -6.36938 -3.96141 2.44054 2.63316 3.16364 3.18285 3.20271 3.79484 4.02940 4.41477 4.46512 4.54152 4.75170 4.79252 4.92738 5.01535 5.10494 5.18062 5.20253 5.22658 5.26668 5.27951 5.37309 5.41250 5.45606 5.50600 5.54495 5.64630 5.69165 5.72987 5.78195 5.80466 5.83904 5.91719 5.93904 5.96369 6.03291 6.05708 6.14037 6.17611 6.22393 6.31302 6.34463 6.40681 6.49232 6.72091 6.73589 7.11005 7.20109 7.45045 7.54770 7.73962 8.09497 8.10466 8.28996 9.09193 9.82593 10.81508 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.002817 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.658792 B = 9935.666003 C =10811.121165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.056 4.056 4 C -0.117 4.117 5 C -0.156 4.156 6 C -0.105 4.105 7 C -0.129 4.129 8 C 0.160 3.840 9 N -0.751 5.751 10 C 0.252 3.748 11 C -0.279 4.279 12 C -0.041 4.041 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.179 6.179 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.866 5.866 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.303 4.303 25 C -0.136 4.136 26 C -0.109 4.109 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.392 0.608 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.269 0.731 47 H 0.123 0.877 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 -24.894 -4.465 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.056 4.056 4 C -0.154 4.154 5 C -0.214 4.214 6 C -0.143 4.143 7 C -0.167 4.167 8 C 0.055 3.945 9 N -0.381 5.381 10 C 0.151 3.849 11 C -0.302 4.302 12 C -0.060 4.060 13 C -0.259 4.259 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.166 4.166 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.327 4.327 25 C -0.175 4.175 26 C -0.147 4.147 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.226 0.774 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.141 0.859 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.081 -24.578 -4.283 24.971 hybrid contribution 1.191 0.246 -0.706 1.406 sum 0.110 -24.331 -4.989 24.838 Atomic orbital electron populations 1.21901 0.96058 1.01289 1.02208 1.21587 0.95801 0.95912 1.01723 1.20582 0.94993 0.94588 0.95466 1.21666 0.94406 1.01302 0.98042 1.21891 1.00166 1.00550 0.98746 1.21582 1.00615 0.94380 0.97703 1.21849 1.01595 0.95820 0.97428 1.20740 0.98663 0.81251 0.93895 1.44641 1.35527 1.06618 1.51267 1.17462 0.90613 0.87682 0.89179 1.20095 1.02073 0.99235 1.08815 1.20373 0.97217 0.92109 0.96263 1.20027 1.01473 0.96695 1.07693 1.19071 0.91724 0.84674 0.91012 1.83985 1.38537 1.20561 1.65180 1.21240 0.99498 0.97596 1.28135 0.89296 1.25257 0.99191 0.94704 0.97410 1.70032 1.39014 1.02754 1.38324 0.85819 0.80464 0.77931 0.79403 1.19624 1.20342 1.19626 1.20505 1.08015 0.92182 1.12011 1.22082 1.01052 0.94807 0.99548 1.21672 1.00913 0.95396 0.96694 0.92492 0.93214 0.92275 0.92297 0.91932 0.92434 0.91249 0.92099 0.92879 0.93181 0.91379 0.91937 0.91581 0.91440 0.90717 0.77408 0.87793 0.87338 0.87025 0.92111 0.85933 0.91702 0.91418 0.91786 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.11 37.15 0.34 -0.73 16 2 C -0.11 -0.78 4.59 -26.73 -0.12 -0.90 16 3 C -0.06 -0.43 0.32 -154.51 -0.05 -0.48 16 4 C -0.12 -0.92 4.29 -26.74 -0.11 -1.03 16 5 C -0.16 -1.19 9.21 37.15 0.34 -0.84 16 6 C -0.10 -0.85 4.24 -26.73 -0.11 -0.96 16 7 C -0.13 -1.24 5.12 -26.73 -0.14 -1.38 16 8 C 0.16 1.89 2.15 -67.93 -0.15 1.74 16 9 N -0.75 -11.17 5.25 -52.18 -0.27 -11.44 16 10 C 0.25 4.76 6.63 -83.81 -0.56 4.20 16 11 C -0.28 -5.04 8.86 -39.33 -0.35 -5.39 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.30 9.99 -39.36 -0.39 -5.69 16 14 C 0.19 4.77 6.64 -39.13 -0.26 4.51 16 15 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 16 C -0.39 -11.12 9.49 30.88 0.29 -10.82 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 20 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 C -0.30 -6.81 9.01 -39.19 -0.35 -7.16 16 25 C -0.14 -1.50 5.17 -26.73 -0.14 -1.64 16 26 C -0.11 -0.96 4.04 -26.73 -0.11 -1.07 16 27 H 0.06 0.38 6.65 -51.93 -0.35 0.04 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 6.35 -51.93 -0.33 0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 6.90 -51.93 -0.36 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.61 4.82 -51.93 -0.25 0.36 16 34 H 0.06 0.49 6.11 -51.93 -0.32 0.17 16 35 H 0.05 0.37 6.88 -51.93 -0.36 0.01 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.56 6.46 -51.93 -0.34 0.22 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 41 H 0.07 0.95 6.47 -51.93 -0.34 0.61 16 42 H 0.39 5.51 8.61 -40.82 -0.35 5.16 16 43 H 0.10 1.63 6.12 -52.48 -0.32 1.31 16 44 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 45 H 0.11 2.42 8.06 -52.48 -0.42 1.99 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.12 2.77 5.64 -52.49 -0.30 2.48 16 48 H 0.06 0.73 6.52 -51.93 -0.34 0.40 16 49 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16 50 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 51 H 0.07 0.56 6.26 -51.93 -0.32 0.23 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -30.67 376.75 -9.34 -40.01 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.12 Total: 8.13 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.36 Total: -27.83 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.48 Total: -36.61 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.67 -9.34 -40.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308677317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.122 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds