Wall clock time and date at job start Tue Mar 31 2020 11:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47474 * 2 1 4 4 C 1.52997 * 109.47232 * 185.05883 * 3 2 1 5 5 C 1.52995 * 109.47303 * 296.06664 * 4 3 2 6 6 C 1.52994 * 109.47001 * 305.06669 * 3 2 1 7 7 C 1.53005 * 109.47001 * 180.02562 * 6 3 2 8 8 C 1.53000 * 109.46776 * 299.99540 * 7 6 3 9 9 N 1.46504 * 109.46865 * 180.02562 * 8 7 6 10 10 C 1.39674 * 119.99502 * 155.00270 * 9 8 7 11 11 C 1.38997 * 120.04418 * 359.72010 * 10 9 8 12 12 C 1.38149 * 120.06485 * 180.30201 * 11 10 9 13 13 C 1.38168 * 120.14223 * 359.95517 * 12 11 10 14 14 C 1.38917 * 120.07978 * 0.04449 * 13 12 11 15 15 O 1.35751 * 120.03585 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00276 * 174.15011 * 15 14 13 17 17 H 1.08000 * 119.99978 * 5.09462 * 16 15 14 18 18 C 1.38648 * 119.99816 * 185.09661 * 16 15 14 19 19 N 1.31561 * 120.00485 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99771 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47161 * 59.99894 * 20 18 16 22 22 H 1.48503 * 109.46835 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47028 * 299.99601 * 20 18 16 24 24 C 1.38753 * 120.03326 * 179.97438 * 10 9 8 25 25 C 1.52997 * 109.47198 * 59.99955 * 8 7 6 26 26 C 1.52997 * 109.47264 * 300.00174 * 25 8 7 27 27 H 1.09002 * 109.47005 * 65.08184 * 1 2 3 28 28 H 1.09000 * 109.47121 * 185.08350 * 1 2 3 29 29 H 1.08996 * 109.47251 * 305.08577 * 1 2 3 30 30 H 1.08996 * 109.47432 * 240.00275 * 2 1 3 31 31 H 1.09001 * 109.47396 * 120.00248 * 2 1 3 32 32 H 1.09004 * 109.47037 * 56.07028 * 4 3 2 33 33 H 1.09004 * 109.47238 * 176.06363 * 4 3 2 34 34 H 1.08997 * 109.47157 * 304.46419 * 5 4 3 35 35 H 1.08999 * 109.47603 * 64.46874 * 5 4 3 36 36 H 1.09007 * 109.47229 * 184.47041 * 5 4 3 37 37 H 1.08996 * 109.47673 * 59.99353 * 6 3 2 38 38 H 1.09002 * 109.47197 * 299.99338 * 6 3 2 39 39 H 1.09000 * 109.47258 * 179.97438 * 7 6 3 40 40 H 1.09004 * 109.47227 * 59.99528 * 7 6 3 41 41 H 1.09004 * 109.47233 * 299.99985 * 8 7 6 42 42 H 0.96996 * 119.99757 * 334.99871 * 9 8 7 43 43 H 1.08005 * 119.96873 * 0.27407 * 11 10 9 44 44 H 1.08003 * 119.93239 * 179.97438 * 12 11 10 45 45 H 1.08004 * 119.96345 * 180.02562 * 13 12 11 46 46 H 0.96998 * 120.00319 * 180.02562 * 19 18 16 47 47 H 1.07992 * 120.07321 * 359.70096 * 24 10 9 48 48 H 1.09004 * 109.47005 * 59.99890 * 25 8 7 49 49 H 1.09004 * 109.47198 * 179.97438 * 25 8 7 50 50 H 1.09004 * 109.46877 * 299.99794 * 26 25 8 51 51 H 1.09000 * 109.47229 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4443 -0.1272 5 6 4.1799 0.7733 1.1024 6 6 1.4287 2.1996 -1.1806 7 6 1.9393 3.6419 -1.1810 8 6 1.5364 4.3258 0.1270 9 7 2.0248 5.7071 0.1264 10 6 1.3851 6.6742 0.9050 11 6 0.2815 6.3285 1.6762 12 6 -0.3553 7.2861 2.4416 13 6 0.1026 8.5897 2.4440 14 6 1.2050 8.9418 1.6755 15 8 1.6538 10.2229 1.6781 16 6 2.7972 10.4724 1.0084 17 1 3.2682 9.6888 0.4334 18 6 3.3682 11.7349 1.0578 19 7 2.7948 12.6893 1.7586 20 14 4.9518 12.0807 0.1294 21 1 4.7383 11.8400 -1.3203 22 1 5.3523 13.4946 0.3433 23 1 6.0241 11.1822 0.6277 24 6 1.8473 7.9825 0.9055 25 6 2.1476 3.5687 1.3077 26 6 1.6371 2.1264 1.3080 27 1 -0.3633 0.4330 -0.9320 28 1 -0.3633 -1.0236 0.0911 29 1 -0.3633 0.5907 0.8409 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8552 0.8964 -1.0236 33 1 3.9223 2.4717 -0.1975 34 1 3.8259 1.2728 2.0042 35 1 3.8859 -0.2760 1.1291 36 1 5.2663 0.8450 1.0501 37 1 0.3425 2.1983 -1.0900 38 1 1.7161 1.7127 -2.1125 39 1 1.5042 4.1812 -2.0224 40 1 3.0256 3.6428 -1.2719 41 1 0.4502 4.3249 0.2179 42 1 2.7924 5.9498 -0.4146 43 1 -0.0787 5.3103 1.6766 44 1 -1.2129 7.0152 3.0397 45 1 -0.3973 9.3359 3.0438 46 1 3.1941 13.5726 1.7929 47 1 2.7049 8.2537 0.3078 48 1 3.2339 3.5696 1.2168 49 1 1.8610 4.0562 2.2396 50 1 0.5509 2.1255 1.3989 51 1 2.0729 1.5869 2.1489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308677317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:01 Heat of formation + Delta-G solvation = -46.149985 kcal Electronic energy + Delta-G solvation = -27128.841932 eV Core-core repulsion = 23605.754093 eV Total energy + Delta-G solvation = -3523.087839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29668 -40.56399 -38.64756 -36.51533 -34.27664 -33.54509 -32.83865 -31.66969 -30.69990 -29.83929 -27.88844 -27.20180 -25.06678 -24.02418 -23.59772 -23.05071 -22.56566 -21.45299 -19.71370 -19.19781 -18.58893 -17.22059 -16.78064 -16.56245 -16.02048 -15.96166 -15.92697 -15.53105 -15.43971 -15.36510 -15.23614 -14.46370 -14.32392 -14.22422 -14.06229 -13.66328 -13.48296 -13.28227 -13.09939 -12.84337 -12.73707 -12.64476 -12.61367 -12.55929 -12.41418 -12.27387 -12.17394 -12.08987 -11.87775 -11.51838 -11.41810 -11.27663 -11.01420 -10.87520 -10.78142 -10.75839 -10.48732 -9.09471 -8.44725 -8.19838 -6.13144 0.77725 0.93829 1.33669 1.45650 1.50342 2.18818 2.55985 2.90044 3.27722 3.60395 3.71104 3.77874 3.88027 4.02159 4.20968 4.23660 4.31434 4.40273 4.42358 4.50879 4.51469 4.57128 4.61636 4.63319 4.69259 4.70297 4.79695 4.83496 4.85427 4.97532 5.00532 5.06275 5.14142 5.16127 5.16362 5.16926 5.24105 5.27327 5.30640 5.34360 5.38354 5.39370 5.43405 5.50315 5.60917 5.65736 5.73406 5.76943 5.82154 6.05982 6.13608 6.64643 6.90784 7.00543 7.84160 8.78788 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.002817 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.658792 B = 9935.666003 C =10811.121165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.051 4.051 4 C -0.116 4.116 5 C -0.156 4.156 6 C -0.101 4.101 7 C -0.123 4.123 8 C 0.158 3.842 9 N -0.741 5.741 10 C 0.260 3.740 11 C -0.264 4.264 12 C -0.027 4.027 13 C -0.264 4.264 14 C 0.153 3.847 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.923 5.923 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.318 4.318 25 C -0.130 4.130 26 C -0.104 4.104 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.397 0.603 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.105 0.895 46 H 0.272 0.728 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.068 0.932 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -28.640 -5.631 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.154 4.154 5 C -0.213 4.213 6 C -0.139 4.139 7 C -0.161 4.161 8 C 0.053 3.947 9 N -0.369 5.369 10 C 0.156 3.844 11 C -0.286 4.286 12 C -0.045 4.045 13 C -0.284 4.284 14 C 0.102 3.898 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.837 3.163 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.342 4.342 25 C -0.169 4.169 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.231 0.769 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.130 0.870 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.981 -28.415 -5.468 28.953 hybrid contribution 1.016 1.077 -0.324 1.516 sum 0.035 -27.337 -5.792 27.944 Atomic orbital electron populations 1.21902 0.95854 1.01631 1.02093 1.21553 0.95915 0.95087 1.02125 1.20534 0.94857 0.95094 0.94619 1.21655 0.94480 1.00757 0.98462 1.21879 1.00112 1.00976 0.98295 1.21576 1.00778 0.93144 0.98401 1.21804 1.01882 0.96629 0.95784 1.20980 0.98541 0.79487 0.95679 1.44834 1.35027 1.07259 1.49809 1.17540 0.90675 0.87092 0.89113 1.20539 1.00690 1.00624 1.06768 1.20815 0.97707 0.90350 0.95651 1.20245 1.01451 0.98457 1.08294 1.19637 0.93200 0.84223 0.92771 1.83946 1.39668 1.23092 1.67214 1.21741 0.99932 0.98435 1.28586 0.88440 1.26585 1.03154 0.94026 0.98369 1.70186 1.41486 1.03434 1.41012 0.84665 0.75287 0.78093 0.78240 1.18167 1.19533 1.18290 1.20514 1.08028 0.93504 1.12145 1.21994 1.00828 0.96053 0.97986 1.21643 1.01097 0.93818 0.97627 0.92391 0.92688 0.92618 0.91734 0.91742 0.91763 0.92347 0.92749 0.92018 0.93295 0.91034 0.90805 0.91841 0.91120 0.90808 0.76909 0.84324 0.83185 0.87668 0.91900 0.86993 0.92090 0.93290 0.91354 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.11 71.98 0.66 -0.98 16 2 C -0.11 -1.15 4.59 30.59 0.14 -1.01 16 3 C -0.05 -0.63 0.32 -52.18 -0.02 -0.64 16 4 C -0.12 -1.52 4.29 30.59 0.13 -1.39 16 5 C -0.16 -2.00 9.21 71.98 0.66 -1.34 16 6 C -0.10 -1.30 4.24 30.59 0.13 -1.17 16 7 C -0.12 -2.03 5.12 30.60 0.16 -1.87 16 8 C 0.16 3.30 2.15 44.99 0.10 3.39 16 9 N -0.74 -20.76 5.25 -319.01 -1.67 -22.44 16 10 C 0.26 9.52 6.63 38.20 0.25 9.77 16 11 C -0.26 -8.79 8.86 22.43 0.20 -8.60 16 12 C -0.03 -0.95 10.03 22.23 0.22 -0.73 16 13 C -0.26 -12.00 9.99 22.42 0.22 -11.77 16 14 C 0.15 8.05 6.64 22.56 0.15 8.20 16 15 O -0.23 -14.64 9.76 -22.77 -0.22 -14.86 16 16 C -0.41 -24.79 9.49 67.92 0.64 -24.15 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 19 N -0.92 -58.17 13.67 21.61 0.30 -57.88 16 20 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 C -0.32 -14.63 9.01 22.52 0.20 -14.43 16 25 C -0.13 -2.55 5.17 30.59 0.16 -2.39 16 26 C -0.10 -1.53 4.04 30.59 0.12 -1.41 16 27 H 0.06 0.59 6.65 -2.39 -0.02 0.57 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.62 6.35 -2.39 -0.02 0.60 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.68 6.90 -2.39 -0.02 0.66 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.90 4.82 -2.38 -0.01 0.89 16 34 H 0.05 0.77 6.11 -2.39 -0.01 0.75 16 35 H 0.06 0.69 6.88 -2.39 -0.02 0.67 16 36 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.07 0.91 6.46 -2.39 -0.02 0.89 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.15 6.34 -2.39 -0.02 1.13 16 41 H 0.07 1.61 6.47 -2.39 -0.02 1.59 16 42 H 0.40 10.62 8.61 -92.71 -0.80 9.82 16 43 H 0.14 3.72 6.12 -2.91 -0.02 3.70 16 44 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 47 H 0.11 5.27 5.64 -2.91 -0.02 5.26 16 48 H 0.06 1.26 6.52 -2.39 -0.02 1.25 16 49 H 0.05 1.16 7.73 -2.38 -0.02 1.14 16 50 H 0.07 0.97 6.47 -2.39 -0.02 0.96 16 51 H 0.07 1.00 6.26 -2.39 -0.01 0.99 16 Total: -1.00 -71.35 376.75 5.17 -66.18 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.14 Total: 34.43 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 4.60 Total: -51.46 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.38 Total: -80.32 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.35 5.17 -66.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308677317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.035 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds