Wall clock time and date at job start Tue Mar 31 2020 12:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47245 * 2 1 4 4 C 1.53004 * 109.46789 * 119.99646 * 2 1 3 5 5 C 1.52997 * 109.46967 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47388 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47115 * 59.99656 * 6 5 4 8 8 N 1.46909 * 109.46961 * 60.00569 * 7 6 5 9 9 C 1.46899 * 110.99948 * 84.99752 * 8 7 6 10 10 C 1.50699 * 109.46733 * 180.02562 * 9 8 7 11 11 C 1.38326 * 119.96426 * 269.71999 * 10 9 8 12 12 C 1.38289 * 120.13595 * 179.76764 * 11 10 9 13 13 C 1.38119 * 120.06495 * 0.51452 * 12 11 10 14 14 C 1.38852 * 119.93506 * 359.74306 * 13 12 11 15 15 O 1.35757 * 120.07067 * 179.97438 * 14 13 12 16 16 C 1.34825 * 116.99493 * 354.48670 * 15 14 13 17 17 H 1.08000 * 120.00690 * 5.06020 * 16 15 14 18 18 C 1.38658 * 119.99643 * 185.05724 * 16 15 14 19 19 N 1.31558 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46865 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47383 * 119.99975 * 20 18 16 23 23 H 1.48500 * 109.47244 * 240.00359 * 20 18 16 24 24 C 1.38079 * 119.96529 * 90.00437 * 10 9 8 25 25 C 1.53001 * 109.47626 * 300.00411 * 7 6 5 26 26 C 1.53004 * 109.46789 * 59.99963 * 25 7 6 27 27 H 1.09008 * 109.47048 * 300.00249 * 1 2 3 28 28 H 1.08998 * 109.47022 * 59.99693 * 1 2 3 29 29 H 1.08997 * 109.47659 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47195 * 239.99479 * 2 1 3 31 31 H 1.08998 * 109.46798 * 299.99340 * 3 2 1 32 32 H 1.08996 * 109.47531 * 60.00122 * 3 2 1 33 33 H 1.09001 * 109.46925 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47720 * 300.00021 * 4 2 1 35 35 H 1.09000 * 109.47368 * 300.00048 * 5 4 2 36 36 H 1.08997 * 109.47307 * 60.00035 * 5 4 2 37 37 H 1.09000 * 109.46647 * 300.00173 * 6 5 4 38 38 H 1.08992 * 109.47441 * 180.02562 * 6 5 4 39 39 H 1.08998 * 109.47490 * 180.02562 * 7 6 5 40 40 H 1.00894 * 110.99681 * 208.95315 * 8 7 6 41 41 H 1.08999 * 109.46834 * 299.99807 * 9 8 7 42 42 H 1.08998 * 109.46752 * 60.00391 * 9 8 7 43 43 H 1.07997 * 119.93292 * 0.02562 * 11 10 9 44 44 H 1.07995 * 119.96147 * 180.25676 * 12 11 10 45 45 H 1.08001 * 120.02920 * 179.76588 * 13 12 11 46 46 H 0.96999 * 120.00210 * 180.02562 * 19 18 16 47 47 H 1.07993 * 120.03316 * 359.94859 * 24 10 9 48 48 H 1.09000 * 109.47195 * 300.00130 * 25 7 6 49 49 H 1.08997 * 109.47651 * 179.97438 * 25 7 6 50 50 H 1.09001 * 109.47117 * 180.02562 * 26 25 7 51 51 H 1.08992 * 109.47720 * 59.99979 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0799 -1.4435 2.4980 7 6 3.5694 -2.8858 2.4978 8 7 4.0586 -3.5783 1.2981 9 6 5.4058 -4.1217 1.5166 10 6 5.8733 -4.8226 0.2671 11 6 5.6149 -6.1704 0.0931 12 6 6.0381 -6.8160 -1.0543 13 6 6.7296 -6.1187 -2.0255 14 6 6.9952 -4.7670 -1.8514 15 8 7.6752 -4.0792 -2.8040 16 6 8.1638 -4.7897 -3.8405 17 1 7.9376 -5.8421 -3.9283 18 6 8.9568 -4.1692 -4.7938 19 7 9.2328 -2.8874 -4.6867 20 14 9.6332 -5.1534 -6.2302 21 1 9.1811 -6.5637 -6.1205 22 1 9.1396 -4.5725 -7.5045 23 1 11.1173 -5.1068 -6.2070 24 6 6.5642 -4.1201 -0.7002 25 6 2.0393 -2.8853 2.4981 26 6 1.5294 -2.1636 1.2491 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 -0.2074 2.1393 35 1 3.9329 -1.2359 0.3591 36 1 3.9337 0.3057 1.2488 37 1 3.7169 -0.9297 3.3882 38 1 5.1699 -1.4435 2.4981 39 1 3.9323 -3.3999 3.3878 40 1 3.4179 -4.3036 1.0128 41 1 6.0913 -3.3085 1.7547 42 1 5.3816 -4.8309 2.3440 43 1 5.0779 -6.7186 0.8530 44 1 5.8312 -7.8673 -1.1891 45 1 7.0631 -6.6244 -2.9197 46 1 9.7872 -2.4533 -5.3537 47 1 6.7689 -3.0688 -0.5621 48 1 1.6763 -2.3715 3.3883 49 1 1.6756 -3.9128 2.4975 50 1 0.4394 -2.1628 1.2494 51 1 1.8924 -2.6773 0.3589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318717346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:22 Heat of formation + Delta-G solvation = -36.019148 kcal Electronic energy + Delta-G solvation = -26792.867113 eV Core-core repulsion = 23270.218580 eV Total energy + Delta-G solvation = -3522.648533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.62677 -38.93525 -36.94089 -35.89462 -33.27014 -32.22685 -30.94722 -30.42022 -29.07246 -27.97870 -27.22334 -25.45156 -24.37805 -22.67806 -22.36280 -21.56769 -20.55793 -19.84572 -19.13504 -17.65626 -16.94190 -15.89661 -15.68405 -15.14444 -14.93450 -14.62903 -14.34031 -14.14449 -14.07697 -13.82163 -13.50704 -13.43776 -13.26522 -12.95108 -12.77563 -12.39232 -12.29622 -12.27673 -12.03670 -11.78306 -11.64828 -11.55504 -11.25707 -11.21951 -11.09245 -10.98353 -10.81145 -10.76872 -10.64989 -10.50828 -10.38635 -10.30184 -9.91607 -9.79301 -9.29256 -8.81728 -8.25936 -8.01080 -7.19495 -6.41291 -4.00237 2.16454 2.40875 3.14127 3.15654 3.21113 3.99235 4.25279 4.61713 4.63249 4.74368 4.78779 4.97015 5.02410 5.10986 5.14930 5.20347 5.34889 5.37595 5.41806 5.51991 5.53993 5.58664 5.59652 5.63019 5.65920 5.73853 5.79123 5.80104 5.81414 5.89381 5.94863 5.96338 6.00711 6.05347 6.15802 6.22093 6.23926 6.29250 6.32356 6.40849 6.42495 6.46442 6.71040 6.72522 6.96563 7.11057 7.18766 7.34786 7.38933 7.48155 7.57378 7.86600 8.03885 9.04547 9.75851 10.76915 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.003021 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.802529 B = 9265.964262 C =10586.404653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.109 4.109 6 C -0.105 4.105 7 C 0.087 3.913 8 N -0.671 5.671 9 C 0.107 3.893 10 C -0.046 4.046 11 C -0.208 4.208 12 C -0.076 4.076 13 C -0.233 4.233 14 C 0.152 3.848 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.165 4.165 25 C -0.119 4.119 26 C -0.111 4.111 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.341 0.659 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.269 0.731 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 2.171 13.485 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.093 4.093 5 C -0.146 4.146 6 C -0.143 4.143 7 C -0.023 4.023 8 N -0.303 5.303 9 C -0.022 4.022 10 C -0.047 4.047 11 C -0.227 4.227 12 C -0.094 4.094 13 C -0.253 4.253 14 C 0.099 3.901 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.185 4.185 25 C -0.156 4.156 26 C -0.148 4.148 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.134 0.866 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.193 3.174 13.040 19.533 hybrid contribution 0.177 -1.373 -0.177 1.396 sum -14.015 1.801 12.863 19.108 Atomic orbital electron populations 1.21891 0.95819 1.01607 1.01171 1.21146 0.95166 0.96110 0.98796 1.21886 1.01547 0.96048 1.01095 1.21117 0.95933 0.95212 0.97033 1.21522 0.94280 0.99419 0.99420 1.21496 1.00374 0.94526 0.97953 1.21507 0.94175 0.95340 0.91297 1.60501 1.03203 1.33096 1.33490 1.20833 0.90736 0.96897 0.93688 1.19162 0.97470 0.93146 0.94877 1.20416 1.08499 0.94440 0.99364 1.20681 0.96866 0.98307 0.93594 1.21172 1.07217 0.95063 1.01820 1.19364 0.91261 0.90472 0.89027 1.83984 1.60558 1.34940 1.28791 1.21358 1.30417 0.94347 1.00587 0.89121 1.25273 0.96379 0.96161 0.98717 1.70050 1.35474 1.09343 1.34935 0.85667 0.78753 0.79173 0.79947 1.19148 1.20163 1.20187 1.20010 1.05441 0.99812 0.93257 1.21700 0.94747 1.00281 0.98920 1.21562 0.99225 0.95564 0.98460 0.93158 0.93117 0.92491 0.90919 0.93108 0.93186 0.92143 0.92264 0.89962 0.92734 0.92668 0.92162 0.94442 0.84037 0.90635 0.95140 0.88180 0.87678 0.85735 0.92140 0.86595 0.91824 0.92389 0.92552 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.84 37.16 0.33 -0.97 16 2 C -0.09 -0.94 2.51 -90.62 -0.23 -1.16 16 3 C -0.15 -1.43 8.84 37.16 0.33 -1.10 16 4 C -0.07 -0.74 1.78 -90.61 -0.16 -0.90 16 5 C -0.11 -1.24 4.69 -26.73 -0.13 -1.36 16 6 C -0.11 -1.14 5.53 -26.73 -0.15 -1.28 16 7 C 0.09 0.91 2.82 -67.71 -0.19 0.72 16 8 N -0.67 -8.46 4.81 -107.99 -0.52 -8.98 16 9 C 0.11 1.50 5.61 -4.98 -0.03 1.48 16 10 C -0.05 -0.81 5.39 -104.65 -0.56 -1.38 16 11 C -0.21 -3.57 9.70 -39.53 -0.38 -3.96 16 12 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -5.14 9.17 -39.40 -0.36 -5.51 16 14 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 16 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 20 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 24 C -0.17 -3.54 9.65 -39.39 -0.38 -3.92 16 25 C -0.12 -1.09 5.30 -26.73 -0.14 -1.23 16 26 C -0.11 -1.08 4.69 -26.72 -0.13 -1.20 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.15 7.60 -51.93 -0.39 0.76 16 36 H 0.05 0.61 6.43 -51.93 -0.33 0.27 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 39 H 0.04 0.39 7.80 -51.93 -0.41 -0.01 16 40 H 0.34 4.23 8.18 -39.30 -0.32 3.91 16 41 H 0.08 1.08 7.38 -51.93 -0.38 0.70 16 42 H 0.03 0.39 8.00 -51.93 -0.42 -0.02 16 43 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.12 2.76 5.64 -52.49 -0.30 2.47 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 50 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 51 H 0.07 0.85 7.48 -51.93 -0.39 0.47 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -29.50 391.48 -10.33 -39.84 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.81 Total: 7.38 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -2.64 Total: -29.89 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.24 Total: -33.75 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.50 -10.33 -39.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318717346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.816 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds