Wall clock time and date at job start Tue Mar 31 2020 12:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47245 * 2 1 4 4 C 1.53004 * 109.46789 * 119.99646 * 2 1 3 5 5 C 1.52997 * 109.46967 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47388 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47115 * 59.99656 * 6 5 4 8 8 N 1.46909 * 109.46961 * 60.00569 * 7 6 5 9 9 C 1.46899 * 110.99948 * 84.99752 * 8 7 6 10 10 C 1.50699 * 109.46733 * 180.02562 * 9 8 7 11 11 C 1.38326 * 119.96426 * 269.71999 * 10 9 8 12 12 C 1.38289 * 120.13595 * 179.76764 * 11 10 9 13 13 C 1.38119 * 120.06495 * 0.51452 * 12 11 10 14 14 C 1.38852 * 119.93506 * 359.74306 * 13 12 11 15 15 O 1.35757 * 120.07067 * 179.97438 * 14 13 12 16 16 C 1.34825 * 116.99493 * 354.48670 * 15 14 13 17 17 H 1.08000 * 120.00690 * 5.06020 * 16 15 14 18 18 C 1.38658 * 119.99643 * 185.05724 * 16 15 14 19 19 N 1.31558 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46865 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47383 * 119.99975 * 20 18 16 23 23 H 1.48500 * 109.47244 * 240.00359 * 20 18 16 24 24 C 1.38079 * 119.96529 * 90.00437 * 10 9 8 25 25 C 1.53001 * 109.47626 * 300.00411 * 7 6 5 26 26 C 1.53004 * 109.46789 * 59.99963 * 25 7 6 27 27 H 1.09008 * 109.47048 * 300.00249 * 1 2 3 28 28 H 1.08998 * 109.47022 * 59.99693 * 1 2 3 29 29 H 1.08997 * 109.47659 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47195 * 239.99479 * 2 1 3 31 31 H 1.08998 * 109.46798 * 299.99340 * 3 2 1 32 32 H 1.08996 * 109.47531 * 60.00122 * 3 2 1 33 33 H 1.09001 * 109.46925 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47720 * 300.00021 * 4 2 1 35 35 H 1.09000 * 109.47368 * 300.00048 * 5 4 2 36 36 H 1.08997 * 109.47307 * 60.00035 * 5 4 2 37 37 H 1.09000 * 109.46647 * 300.00173 * 6 5 4 38 38 H 1.08992 * 109.47441 * 180.02562 * 6 5 4 39 39 H 1.08998 * 109.47490 * 180.02562 * 7 6 5 40 40 H 1.00894 * 110.99681 * 208.95315 * 8 7 6 41 41 H 1.08999 * 109.46834 * 299.99807 * 9 8 7 42 42 H 1.08998 * 109.46752 * 60.00391 * 9 8 7 43 43 H 1.07997 * 119.93292 * 0.02562 * 11 10 9 44 44 H 1.07995 * 119.96147 * 180.25676 * 12 11 10 45 45 H 1.08001 * 120.02920 * 179.76588 * 13 12 11 46 46 H 0.96999 * 120.00210 * 180.02562 * 19 18 16 47 47 H 1.07993 * 120.03316 * 359.94859 * 24 10 9 48 48 H 1.09000 * 109.47195 * 300.00130 * 25 7 6 49 49 H 1.08997 * 109.47651 * 179.97438 * 25 7 6 50 50 H 1.09001 * 109.47117 * 180.02562 * 26 25 7 51 51 H 1.08992 * 109.47720 * 59.99979 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0799 -1.4435 2.4980 7 6 3.5694 -2.8858 2.4978 8 7 4.0586 -3.5783 1.2981 9 6 5.4058 -4.1217 1.5166 10 6 5.8733 -4.8226 0.2671 11 6 5.6149 -6.1704 0.0931 12 6 6.0381 -6.8160 -1.0543 13 6 6.7296 -6.1187 -2.0255 14 6 6.9952 -4.7670 -1.8514 15 8 7.6752 -4.0792 -2.8040 16 6 8.1638 -4.7897 -3.8405 17 1 7.9376 -5.8421 -3.9283 18 6 8.9568 -4.1692 -4.7938 19 7 9.2328 -2.8874 -4.6867 20 14 9.6332 -5.1534 -6.2302 21 1 9.1811 -6.5637 -6.1205 22 1 9.1396 -4.5725 -7.5045 23 1 11.1173 -5.1068 -6.2070 24 6 6.5642 -4.1201 -0.7002 25 6 2.0393 -2.8853 2.4981 26 6 1.5294 -2.1636 1.2491 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 -0.2074 2.1393 35 1 3.9329 -1.2359 0.3591 36 1 3.9337 0.3057 1.2488 37 1 3.7169 -0.9297 3.3882 38 1 5.1699 -1.4435 2.4981 39 1 3.9323 -3.3999 3.3878 40 1 3.4179 -4.3036 1.0128 41 1 6.0913 -3.3085 1.7547 42 1 5.3816 -4.8309 2.3440 43 1 5.0779 -6.7186 0.8530 44 1 5.8312 -7.8673 -1.1891 45 1 7.0631 -6.6244 -2.9197 46 1 9.7872 -2.4533 -5.3537 47 1 6.7689 -3.0688 -0.5621 48 1 1.6763 -2.3715 3.3883 49 1 1.6756 -3.9128 2.4975 50 1 0.4394 -2.1628 1.2494 51 1 1.8924 -2.6773 0.3589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318717346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:21 Heat of formation + Delta-G solvation = -51.227167 kcal Electronic energy + Delta-G solvation = -26793.526582 eV Core-core repulsion = 23270.218580 eV Total energy + Delta-G solvation = -3523.308002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85297 -40.32799 -38.50903 -36.99430 -34.48378 -34.14521 -31.86688 -31.67882 -30.67626 -29.05503 -27.98035 -27.39354 -25.74007 -23.53130 -23.31519 -23.09791 -22.19763 -20.66679 -20.01861 -19.50288 -18.76098 -16.90959 -16.79553 -16.56791 -16.26036 -16.05305 -16.00962 -15.46259 -15.09008 -15.03935 -14.79271 -14.57372 -14.40941 -14.17956 -13.86534 -13.82062 -13.62854 -13.19050 -13.14829 -13.01705 -12.95912 -12.79129 -12.44896 -12.40624 -12.26613 -12.12032 -12.09401 -12.01950 -11.89834 -11.78936 -11.56241 -11.20898 -11.13617 -10.81155 -10.74270 -10.62018 -9.65565 -9.19855 -8.95460 -8.46381 -6.14947 0.55454 0.76432 1.34275 1.43042 1.52899 2.17706 2.80601 3.12637 3.41284 3.54346 3.80566 3.86144 3.94458 4.04722 4.13647 4.18533 4.25832 4.32859 4.36393 4.45423 4.55345 4.57763 4.61293 4.66591 4.71503 4.75803 4.77021 4.80285 4.81605 4.87480 4.95163 5.05084 5.07194 5.11719 5.14075 5.16662 5.18267 5.21356 5.32490 5.36953 5.40789 5.46825 5.48764 5.55620 5.63419 5.68821 5.75285 5.79934 5.82314 6.04009 6.18277 6.29286 6.59186 6.98289 7.80829 8.77327 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.003021 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.802529 B = 9265.964262 C =10586.404653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.068 4.068 5 C -0.106 4.106 6 C -0.106 4.106 7 C 0.089 3.911 8 N -0.682 5.682 9 C 0.114 3.886 10 C -0.035 4.035 11 C -0.183 4.183 12 C -0.071 4.071 13 C -0.246 4.246 14 C 0.112 3.888 15 O -0.236 6.236 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.182 4.182 25 C -0.113 4.113 26 C -0.108 4.108 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.116 0.884 46 H 0.272 0.728 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.949 -0.110 15.926 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.087 4.087 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.021 4.021 8 N -0.315 5.315 9 C -0.015 4.015 10 C -0.035 4.035 11 C -0.202 4.202 12 C -0.089 4.089 13 C -0.266 4.266 14 C 0.062 3.938 15 O -0.143 6.143 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.202 4.202 25 C -0.150 4.150 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.164 0.836 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.573 0.865 15.529 22.728 hybrid contribution 0.726 -0.706 -0.664 1.211 sum -15.847 0.158 14.865 21.728 Atomic orbital electron populations 1.21848 0.94406 1.01990 1.01783 1.21140 0.96333 0.96009 0.97932 1.21872 1.00743 0.96061 1.01785 1.21069 0.94524 0.95745 0.97319 1.21447 0.95648 0.98876 0.98403 1.21516 0.99517 0.95196 0.98145 1.21553 0.95308 0.94587 0.90603 1.60412 1.02562 1.33302 1.35190 1.20761 0.91419 0.97038 0.92261 1.19588 0.95299 0.93736 0.94894 1.20977 1.05937 0.93939 0.99323 1.21124 0.95071 1.00055 0.92688 1.21287 1.08240 0.94223 1.02815 1.19916 0.92309 0.92038 0.89545 1.83947 1.63207 1.36696 1.30410 1.21857 1.30927 0.95003 1.01089 0.88184 1.26603 0.96412 0.97369 1.01768 1.70201 1.37468 1.11602 1.36767 0.84526 0.78051 0.78028 0.75561 1.17429 1.19312 1.19314 1.20171 1.06725 0.99521 0.93779 1.21678 0.93307 1.01064 0.98977 1.21524 0.99955 0.95011 0.98058 0.91968 0.93088 0.92202 0.93432 0.93017 0.91872 0.93421 0.90904 0.93452 0.93070 0.90735 0.93678 0.93245 0.83603 0.91435 0.92384 0.83541 0.83737 0.86615 0.91907 0.88265 0.90149 0.91277 0.91230 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.84 71.98 0.64 -1.67 16 2 C -0.10 -1.89 2.51 -10.79 -0.03 -1.92 16 3 C -0.15 -2.82 8.84 71.98 0.64 -2.19 16 4 C -0.07 -1.28 1.78 -10.79 -0.02 -1.29 16 5 C -0.11 -2.44 4.69 30.59 0.14 -2.29 16 6 C -0.11 -2.14 5.53 30.59 0.17 -1.97 16 7 C 0.09 1.64 2.82 44.91 0.13 1.77 16 8 N -0.68 -15.98 4.81 -495.57 -2.38 -18.36 16 9 C 0.11 2.96 5.61 85.56 0.48 3.44 16 10 C -0.03 -1.18 5.39 -19.88 -0.11 -1.28 16 11 C -0.18 -5.58 9.70 22.30 0.22 -5.36 16 12 C -0.07 -2.45 10.04 22.25 0.22 -2.23 16 13 C -0.25 -10.99 9.17 22.39 0.21 -10.78 16 14 C 0.11 5.78 6.65 22.58 0.15 5.93 16 15 O -0.24 -14.71 9.76 -22.77 -0.22 -14.93 16 16 C -0.41 -24.72 9.49 67.92 0.64 -24.07 16 17 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 19 N -0.92 -57.98 13.67 21.61 0.30 -57.68 16 20 Si 1.02 43.83 29.55 68.60 2.03 45.85 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 C -0.18 -8.14 9.65 22.39 0.22 -7.92 16 25 C -0.11 -1.68 5.30 30.60 0.16 -1.52 16 26 C -0.11 -1.90 4.69 30.60 0.14 -1.76 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.92 6.43 -2.39 -0.02 0.91 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.02 6.43 -2.39 -0.02 1.00 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.41 7.60 -2.39 -0.02 1.40 16 36 H 0.05 1.18 6.43 -2.39 -0.02 1.16 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 1.04 7.45 -2.39 -0.02 1.02 16 39 H 0.05 0.84 7.80 -2.39 -0.02 0.82 16 40 H 0.34 7.61 8.18 -89.70 -0.73 6.88 16 41 H 0.07 1.89 7.38 -2.39 -0.02 1.87 16 42 H 0.06 1.23 8.00 -2.39 -0.02 1.21 16 43 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 44 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 50 H 0.07 1.05 6.43 -2.39 -0.02 1.04 16 51 H 0.05 1.16 7.48 -2.39 -0.02 1.14 16 Total: -1.00 -70.73 391.48 4.35 -66.38 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.17 Total: 34.84 kcal Atomic # 6 Polarization: -60.56 SS G_CDS: 4.47 Total: -56.09 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -2.09 Total: -76.05 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.22 Total: -14.93 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.73 4.35 -66.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318717346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.150 kcal (2) G-P(sol) polarization free energy of solvation -70.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds