Wall clock time and date at job start Tue Mar 31 2020 11:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47189 * 240.00307 * 3 2 1 5 5 H 1.48501 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47025 * 120.00079 * 3 2 1 7 7 C 1.38812 * 119.99466 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99417 * 166.81768 * 7 2 1 9 9 N 1.36934 * 120.00496 * 346.80893 * 7 2 1 10 10 C 1.46928 * 120.63046 * 325.50329 * 9 7 2 11 11 C 1.53189 * 108.77613 * 233.63125 * 10 9 7 12 12 C 1.53043 * 109.30759 * 305.36250 * 11 10 9 13 13 N 1.46902 * 109.45585 * 181.38679 * 12 11 10 14 14 C 1.46904 * 110.99882 * 88.01179 * 13 12 11 15 15 C 1.53115 * 109.52229 * 82.35339 * 14 13 12 16 16 C 1.53175 * 109.20934 * 177.56095 * 15 14 13 17 17 N 1.46844 * 109.55652 * 300.86250 * 16 15 14 18 18 C 1.46902 * 111.00254 * 185.84058 * 17 16 15 19 19 C 1.52998 * 109.47272 * 158.57025 * 18 17 16 20 20 F 1.39892 * 109.46976 * 304.42998 * 19 18 17 21 21 F 1.39893 * 109.47198 * 64.43138 * 19 18 17 22 22 C 1.46841 * 111.20335 * 61.73846 * 17 16 15 23 23 C 1.53045 * 109.52307 * 298.26106 * 22 17 16 24 24 C 1.53039 * 109.52736 * 61.37435 * 12 11 10 25 25 C 1.46925 * 120.63396 * 145.52224 * 9 7 2 26 26 H 0.96999 * 119.99379 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58862 * 113.83763 * 10 9 7 28 28 H 1.09003 * 109.58636 * 353.41923 * 10 9 7 29 29 H 1.09005 * 109.49641 * 185.41844 * 11 10 9 30 30 H 1.08997 * 109.52842 * 65.33137 * 11 10 9 31 31 H 1.08999 * 109.46356 * 301.35827 * 12 11 10 32 32 H 1.00900 * 111.00353 * 211.95899 * 13 12 11 33 33 H 1.08995 * 109.52194 * 322.22395 * 14 13 12 34 34 H 1.09000 * 109.50347 * 297.56130 * 15 14 13 35 35 H 1.08995 * 109.50823 * 57.67870 * 15 14 13 36 36 H 1.08996 * 109.44973 * 180.83073 * 16 15 14 37 37 H 1.09009 * 109.43779 * 60.88021 * 16 15 14 38 38 H 1.09007 * 109.46365 * 278.57086 * 18 17 16 39 39 H 1.08997 * 109.47278 * 38.56120 * 18 17 16 40 40 H 1.09001 * 109.46736 * 184.43245 * 19 18 17 41 41 H 1.08998 * 109.46973 * 178.24775 * 22 17 16 42 42 H 1.09001 * 109.45466 * 58.26977 * 22 17 16 43 43 H 1.08999 * 109.50340 * 299.23872 * 23 22 17 44 44 H 1.09002 * 109.50420 * 179.11576 * 23 22 17 45 45 H 1.08995 * 109.49484 * 58.57951 * 24 12 11 46 46 H 1.09003 * 109.49575 * 178.67360 * 24 12 11 47 47 H 1.08998 * 109.58945 * 246.16455 * 25 9 7 48 48 H 1.09000 * 109.58145 * 6.44071 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0689 -1.2144 -0.2139 9 7 1.3526 -2.3726 0.2695 10 6 0.2442 -2.4032 1.2335 11 6 0.5319 -3.4828 2.2816 12 6 0.7889 -4.8167 1.5766 13 7 1.0325 -5.8615 2.5801 14 6 -0.2277 -6.4816 3.0109 15 6 -0.6416 -7.5547 2.0002 16 6 -1.9230 -8.2382 2.4872 17 7 -1.6870 -8.8439 3.8039 18 6 -2.8516 -9.6259 4.2400 19 6 -2.4158 -10.6444 5.2953 20 9 -1.3853 -11.4378 4.7800 21 9 -1.9610 -9.9707 6.4338 22 6 -1.3335 -7.8257 4.8012 23 6 -0.0352 -7.1306 4.3844 24 6 2.0134 -4.6873 0.6677 25 6 1.7423 -3.6217 -0.3988 26 1 -0.4849 0.8401 0.0004 27 1 -0.6853 -2.6364 0.7142 28 1 0.1583 -1.4328 1.7225 29 1 -0.3261 -3.5821 2.9465 30 1 1.4112 -3.2025 2.8615 31 1 -0.0814 -5.0844 0.9775 32 1 1.6760 -6.5556 2.2307 33 1 -1.0054 -5.7206 3.0734 34 1 -0.8208 -7.0911 1.0301 35 1 0.1533 -8.2949 1.9090 36 1 -2.2131 -9.0131 1.7777 37 1 -2.7210 -7.4998 2.5648 38 1 -3.5989 -8.9571 4.6673 39 1 -3.2790 -10.1490 3.3847 40 1 -3.2628 -11.2768 5.5614 41 1 -1.1954 -8.3009 5.7723 42 1 -2.1344 -7.0893 4.8678 43 1 0.7692 -7.8642 4.3308 44 1 0.2185 -6.3642 5.1167 45 1 2.8787 -4.3953 1.2626 46 1 2.2100 -5.6441 0.1840 47 1 0.9350 -3.9543 -1.0512 48 1 2.6435 -3.4546 -0.9887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319394426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:13 Heat of formation + Delta-G solvation = -104.530289 kcal Electronic energy + Delta-G solvation = -27728.763953 eV Core-core repulsion = 23681.207776 eV Total energy + Delta-G solvation = -4047.556178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.197 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.76593 -47.78630 -40.48870 -39.19191 -36.80642 -34.65563 -32.93870 -31.83105 -31.63468 -30.82321 -28.88098 -26.53108 -24.57654 -24.04864 -23.86314 -23.08799 -22.38021 -20.99144 -20.55674 -18.68933 -18.50241 -18.15901 -17.28823 -17.00727 -16.72135 -16.32689 -15.89622 -15.67417 -15.55859 -15.33093 -14.96391 -14.89035 -14.82943 -14.62784 -14.28788 -14.15213 -13.96959 -13.74658 -13.37368 -13.20295 -13.06364 -12.99107 -12.93003 -12.63907 -12.58612 -12.40508 -12.18058 -12.09098 -11.99461 -11.84513 -11.77916 -11.55281 -11.33562 -11.17055 -10.98157 -10.56971 -9.40637 -9.23324 -8.60818 -7.88855 -5.41814 1.45538 1.48357 1.54932 2.49925 2.70474 3.09010 3.13635 3.29125 3.49658 3.67464 3.69591 3.79229 3.91413 3.99853 4.09895 4.13271 4.19149 4.26095 4.40721 4.43015 4.51145 4.55302 4.59744 4.60521 4.66557 4.71479 4.73744 4.86033 4.89052 4.97576 4.99005 5.03226 5.12343 5.14888 5.21653 5.25597 5.36137 5.40327 5.47899 5.64414 5.72732 5.96559 6.01060 6.20664 6.41430 6.59185 7.15127 7.83873 8.39582 9.17258 Molecular weight = 317.20amu Principal moments of inertia in cm(-1) A = 0.034386 B = 0.002375 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.089562 B =11788.904786 C =11972.857640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.269 4.269 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.185 3.815 11 C -0.109 4.109 12 C 0.110 3.890 13 N -0.682 5.682 14 C 0.090 3.910 15 C -0.139 4.139 16 C 0.065 3.935 17 N -0.545 5.545 18 C -0.002 4.002 19 C 0.262 3.738 20 F -0.216 7.216 21 F -0.220 7.220 22 C 0.046 3.954 23 C -0.095 4.095 24 C -0.120 4.120 25 C 0.144 3.856 26 H 0.251 0.749 27 H -0.006 1.006 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.345 0.655 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.012 0.988 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 -23.669 9.515 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.399 4.399 8 H 0.080 0.920 9 N -0.333 5.333 10 C 0.059 3.941 11 C -0.149 4.149 12 C 0.001 3.999 13 N -0.312 5.312 14 C -0.020 4.020 15 C -0.178 4.178 16 C -0.063 4.063 17 N -0.270 5.270 18 C -0.131 4.131 19 C 0.208 3.792 20 F -0.197 7.197 21 F -0.202 7.202 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.160 4.160 25 C 0.018 3.982 26 H 0.060 0.940 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.171 0.829 41 H 0.110 0.890 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.030 0.970 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.954 -23.402 9.991 26.379 hybrid contribution -0.535 1.385 -0.815 1.694 sum -7.489 -22.017 9.176 25.001 Atomic orbital electron populations 1.70161 1.06800 1.26028 1.54983 1.26004 0.96121 1.01779 1.00307 0.85334 0.77608 0.78988 0.78453 1.19811 1.21866 1.20381 1.19419 0.91583 0.85526 1.43421 0.92012 1.44229 1.38610 1.04599 1.45886 1.20466 0.88365 0.96228 0.89090 1.21951 1.00087 0.95198 0.97637 1.21166 0.96577 0.91245 0.90942 1.60578 1.12920 1.15639 1.42066 1.21619 0.91118 0.94319 0.94941 1.22262 0.98715 0.98200 0.98667 1.22045 0.96219 0.97872 0.90159 1.61877 1.36263 1.25729 1.03098 1.23366 0.92776 0.96905 1.00049 1.22518 0.87278 0.88543 0.80858 1.92958 1.63959 1.75298 1.87528 1.92868 1.91295 1.81851 1.54177 1.22418 0.96617 0.92944 0.96214 1.21442 0.97346 0.98798 0.95730 1.22052 0.97564 0.99028 0.97340 1.21020 0.97444 0.86392 0.93375 0.94048 0.98794 0.93963 0.92919 0.93440 0.94864 0.83523 0.92386 0.91954 0.90865 0.89164 0.94748 0.90308 0.85972 0.82886 0.88980 0.94855 0.91604 0.91542 0.92345 0.90056 0.97029 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 11.45 21.65 0.25 -56.33 16 2 C -0.05 -2.64 4.96 84.86 0.42 -2.22 16 3 Si 0.97 45.65 29.57 68.60 2.03 47.68 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.27 -15.25 9.53 84.03 0.80 -14.44 16 8 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16 9 N -0.61 -31.65 2.96 -699.12 -2.07 -33.72 16 10 C 0.18 9.27 5.25 86.36 0.45 9.73 16 11 C -0.11 -4.37 5.61 30.67 0.17 -4.19 16 12 C 0.11 3.65 2.26 44.94 0.10 3.75 16 13 N -0.68 -18.56 6.06 -468.91 -2.84 -21.40 16 14 C 0.09 2.16 2.35 44.99 0.11 2.26 16 15 C -0.14 -2.83 5.34 30.69 0.16 -2.66 16 16 C 0.07 1.10 5.42 86.37 0.47 1.57 16 17 N -0.54 -9.28 4.43 -896.08 -3.97 -13.25 16 18 C 0.00 -0.02 5.39 86.30 0.47 0.44 16 19 C 0.26 2.95 5.59 71.98 0.40 3.35 16 20 F -0.22 -3.89 17.18 44.97 0.77 -3.12 16 21 F -0.22 -3.68 14.64 44.97 0.66 -3.02 16 22 C 0.05 0.88 5.23 86.33 0.45 1.33 16 23 C -0.09 -2.09 5.70 30.65 0.17 -1.91 16 24 C -0.12 -4.05 5.33 30.67 0.16 -3.88 16 25 C 0.14 6.08 6.52 86.36 0.56 6.64 16 26 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 27 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.04 2.39 6.44 -2.39 -0.02 2.38 16 29 H 0.05 1.98 7.61 -2.38 -0.02 1.96 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.14 6.94 -2.39 -0.02 1.13 16 32 H 0.35 8.40 8.06 -89.69 -0.72 7.67 16 33 H 0.06 1.59 7.34 -2.39 -0.02 1.58 16 34 H 0.06 1.35 7.32 -2.39 -0.02 1.34 16 35 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.09 1.25 7.92 -2.39 -0.02 1.23 16 37 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.08 0.69 7.98 -2.38 -0.02 0.67 16 39 H 0.12 0.81 7.77 -2.39 -0.02 0.80 16 40 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.09 1.80 5.44 -2.39 -0.01 1.79 16 42 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -67.57 368.50 -0.05 -67.62 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.22 Total: 15.79 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.91 Total: -0.24 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -8.63 Total: -124.71 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.43 Total: -6.14 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -67.57 -0.05 -67.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319394426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.915 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds