Wall clock time and date at job start Tue Mar 31 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 C 1.53005 * 109.47427 * 239.99851 * 2 1 3 5 5 C 1.50704 * 109.47098 * 119.99717 * 2 1 3 6 6 C 1.38256 * 120.08623 * 0.02562 * 5 2 1 7 7 C 1.38017 * 119.87188 * 180.11029 * 6 5 2 8 8 C 1.38735 * 120.36874 * 0.02562 * 7 6 5 9 9 C 1.37827 * 119.73302 * 359.83153 * 8 7 6 10 10 C 1.38030 * 120.08314 * 180.02562 * 5 2 1 11 11 C 1.50723 * 121.65940 * 180.29093 * 9 8 7 12 12 C 1.52887 * 109.96694 * 343.10139 * 11 9 8 13 13 N 1.47157 * 108.52072 * 50.34945 * 12 11 9 14 14 C 1.46894 * 111.00226 * 52.15801 * 13 12 11 15 15 C 1.53001 * 109.47217 * 70.66414 * 14 13 12 16 16 O 1.42896 * 109.47389 * 65.10777 * 15 14 13 17 17 C 1.42893 * 113.99979 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47290 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99442 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99968 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00425 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99570 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47734 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47129 * 119.99832 * 22 20 18 25 25 H 1.48503 * 109.47280 * 239.99834 * 22 20 18 26 26 C 1.46633 * 110.24268 * 288.74179 * 13 12 11 27 27 H 1.08993 * 109.47283 * 300.00054 * 1 2 3 28 28 H 1.08996 * 109.47000 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46839 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46464 * 299.99931 * 3 2 1 32 32 H 1.08993 * 109.47121 * 59.99847 * 3 2 1 33 33 H 1.08999 * 109.46802 * 300.00022 * 4 2 1 34 34 H 1.09000 * 109.46845 * 59.99554 * 4 2 1 35 35 H 1.08995 * 109.47168 * 180.02562 * 4 2 1 36 36 H 1.08007 * 120.06344 * 0.09438 * 6 5 2 37 37 H 1.07998 * 119.81853 * 179.97438 * 7 6 5 38 38 H 1.08004 * 119.82662 * 359.97438 * 10 5 2 39 39 H 1.08998 * 109.38334 * 222.94845 * 11 9 8 40 40 H 1.09000 * 109.38846 * 103.25897 * 11 9 8 41 41 H 1.09003 * 109.63282 * 290.63431 * 12 11 9 42 42 H 1.09005 * 109.62450 * 170.05663 * 12 11 9 43 43 H 1.09000 * 109.46810 * 310.66161 * 14 13 12 44 44 H 1.09005 * 109.47053 * 190.66343 * 14 13 12 45 45 H 1.09004 * 109.46580 * 305.10646 * 15 14 13 46 46 H 1.08999 * 109.46660 * 185.11390 * 15 14 13 47 47 H 1.08999 * 109.47684 * 300.00568 * 17 16 15 48 48 H 1.09005 * 109.46843 * 60.00374 * 17 16 15 49 49 H 0.96996 * 120.00167 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.30721 * 172.90213 * 26 13 12 51 51 H 1.09002 * 109.30185 * 292.28752 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1355 -1.2369 2.1415 7 6 1.6004 -1.8846 3.2681 8 6 2.9637 -2.0102 3.4925 9 6 3.8573 -1.4877 2.5825 10 6 3.3891 -0.8370 1.4509 11 6 5.3470 -1.6051 2.7798 12 6 5.6545 -1.9622 4.2342 13 7 4.8276 -3.1179 4.6166 14 6 4.9788 -4.2156 3.6523 15 6 6.3725 -4.8308 3.7943 16 8 6.4951 -5.4410 5.0806 17 6 7.7664 -6.0493 5.3165 18 6 7.7842 -6.6574 6.6953 19 1 6.9117 -6.5868 7.3279 20 6 8.9143 -7.3039 7.1490 21 7 9.9765 -7.3904 6.3785 22 14 8.9361 -8.0583 8.8577 23 1 7.6264 -7.8261 9.5182 24 1 9.1851 -9.5184 8.7511 25 1 10.0141 -7.4297 9.6627 26 6 3.4225 -2.7174 4.7409 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 0.0731 -1.1413 1.9720 37 1 0.8991 -2.2952 3.9794 38 1 4.0896 -0.4260 0.7390 39 1 5.8206 -0.6550 2.5325 40 1 5.7384 -2.3839 2.1253 41 1 5.4186 -1.1143 4.8773 42 1 6.7095 -2.2181 4.3331 43 1 4.8531 -3.8302 2.6405 44 1 4.2239 -4.9772 3.8475 45 1 7.1264 -4.0506 3.6888 46 1 6.5179 -5.5836 3.0195 47 1 7.9404 -6.8275 4.5734 48 1 8.5495 -5.2947 5.2425 49 1 10.7714 -7.8455 6.6976 50 1 2.8079 -3.6035 4.8995 51 1 3.3126 -2.0488 5.5947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327800305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:57 Heat of formation + Delta-G solvation = -34.544456 kcal Electronic energy + Delta-G solvation = -26692.975751 eV Core-core repulsion = 23170.391166 eV Total energy + Delta-G solvation = -3522.584586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76406 -38.72004 -36.63613 -35.57179 -32.86378 -32.64258 -30.93952 -29.60826 -28.80727 -27.57881 -27.54795 -26.78643 -24.29951 -23.73418 -22.37808 -22.21849 -21.73070 -19.91620 -18.35620 -16.81607 -16.33239 -16.15021 -15.94736 -15.40823 -14.96713 -14.74624 -14.66926 -14.38604 -14.33134 -14.09802 -13.86506 -13.65122 -13.29083 -13.09044 -12.75525 -12.66291 -12.47672 -12.20071 -12.04433 -12.03447 -11.83448 -11.78098 -11.60357 -11.42919 -11.22264 -11.07785 -11.05139 -10.81851 -10.72198 -10.68223 -10.59874 -10.27784 -9.92309 -9.00138 -8.82121 -8.73390 -8.51509 -8.09639 -8.01808 -6.04669 -4.05161 1.22521 1.27615 3.33396 3.39620 3.46920 3.57558 4.09020 4.28948 4.40032 4.41503 4.66061 4.68199 4.78087 4.83741 4.94815 4.96593 5.05644 5.12397 5.21303 5.27876 5.28778 5.31891 5.38968 5.41429 5.44406 5.52174 5.53809 5.55745 5.57988 5.69154 5.73183 5.75322 5.82294 5.87521 5.91491 5.95900 5.96348 5.99275 6.08077 6.12380 6.21400 6.34458 6.37914 6.48681 6.55910 6.91303 7.17606 7.24630 7.28927 7.51448 7.87862 8.24414 8.70241 9.10442 9.59547 11.07124 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032646 B = 0.002247 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.486735 B =12459.613128 C =12757.269949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.112 4.112 8 C -0.113 4.113 9 C -0.072 4.072 10 C -0.114 4.114 11 C -0.122 4.122 12 C 0.051 3.949 13 N -0.509 5.509 14 C 0.054 3.946 15 C 0.069 3.931 16 O -0.380 6.380 17 C 0.194 3.806 18 C -0.508 4.508 19 H 0.067 0.933 20 C 0.054 3.946 21 N -0.901 5.901 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.091 3.909 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.001 0.999 48 H 0.003 0.997 49 H 0.262 0.738 50 H 0.086 0.914 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.097 17.679 -14.628 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.074 4.074 6 C -0.143 4.143 7 C -0.131 4.131 8 C -0.114 4.114 9 C -0.072 4.072 10 C -0.132 4.132 11 C -0.160 4.160 12 C -0.077 4.077 13 N -0.229 5.229 14 C -0.074 4.074 15 C -0.009 4.009 16 O -0.299 6.299 17 C 0.119 3.881 18 C -0.546 4.546 19 H 0.085 0.915 20 C -0.147 4.147 21 N -0.540 5.540 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.038 4.038 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.880 17.406 -13.998 28.611 hybrid contribution 0.124 -0.126 -0.268 0.321 sum -17.756 17.280 -14.266 28.590 Atomic orbital electron populations 1.21950 0.94251 1.01975 1.01835 1.19486 0.95606 0.95001 0.92804 1.21883 1.01190 0.94651 1.01759 1.21889 1.01214 1.00316 0.96130 1.19682 0.93246 0.98680 0.95815 1.21071 0.99526 0.99137 0.94569 1.21081 0.94828 0.99526 0.97638 1.20538 0.93459 0.99508 0.97941 1.19552 0.95298 0.97870 0.94472 1.20865 0.94936 1.00194 0.97185 1.21167 0.91944 1.02598 1.00308 1.22251 0.99344 0.93287 0.92790 1.62530 1.05800 1.06951 1.47662 1.22275 0.98440 0.93190 0.93486 1.22209 0.94970 0.95433 0.88323 1.87941 1.37661 1.73690 1.30612 1.20172 0.79876 0.91435 0.96597 1.21111 0.99685 1.34369 0.99444 0.91472 1.24954 0.95177 0.96321 0.98244 1.69974 1.03662 1.43684 1.36728 0.86298 0.78173 0.78625 0.83498 1.19459 1.20951 1.20920 1.21199 0.89706 0.99166 0.93718 0.92295 0.92469 0.92267 0.92453 0.92443 0.92530 0.92483 0.92427 0.92436 0.85922 0.86133 0.86515 0.90393 0.90101 0.90616 0.89502 0.93440 0.90413 0.94683 0.94534 0.98090 0.97958 0.92837 0.89567 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 7.13 37.16 0.27 -0.66 16 2 C -0.03 -0.22 0.85 -155.65 -0.13 -0.35 16 3 C -0.14 -0.95 8.29 37.16 0.31 -0.65 16 4 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16 5 C -0.07 -0.71 4.75 -104.69 -0.50 -1.21 16 6 C -0.13 -1.22 8.98 -39.66 -0.36 -1.57 16 7 C -0.11 -1.18 9.65 -39.48 -0.38 -1.57 16 8 C -0.11 -1.34 5.41 -104.62 -0.57 -1.90 16 9 C -0.07 -0.84 5.15 -104.60 -0.54 -1.37 16 10 C -0.11 -1.19 8.34 -39.49 -0.33 -1.52 16 11 C -0.12 -1.38 5.15 -27.93 -0.14 -1.53 16 12 C 0.05 0.69 5.70 -3.74 -0.02 0.67 16 13 N -0.51 -7.79 4.94 -236.20 -1.17 -8.96 16 14 C 0.05 0.85 4.73 -3.83 -0.02 0.83 16 15 C 0.07 1.32 6.07 37.16 0.23 1.54 16 16 O -0.38 -9.44 10.27 -35.23 -0.36 -9.80 16 17 C 0.19 5.45 5.69 36.01 0.20 5.66 16 18 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 19 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 22 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 C 0.09 1.16 5.54 -5.16 -0.03 1.13 16 27 H 0.06 0.37 7.52 -51.93 -0.39 -0.02 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 7.52 -51.93 -0.39 0.00 16 30 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 36 H 0.12 0.98 5.92 -52.48 -0.31 0.67 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.08 7.09 -52.48 -0.37 0.71 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.94 6.62 -51.93 -0.34 0.60 16 41 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 42 H 0.09 1.26 6.89 -51.93 -0.36 0.90 16 43 H 0.05 0.67 5.22 -51.93 -0.27 0.40 16 44 H 0.08 1.26 7.84 -51.93 -0.41 0.85 16 45 H 0.04 0.65 6.68 -51.93 -0.35 0.30 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 48 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.09 1.07 7.85 -51.93 -0.41 0.67 16 51 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -32.35 391.55 -11.02 -43.36 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.98 Total: -3.71 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.12 Total: -17.35 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.43 Total: -35.65 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.36 Total: -9.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.35 -11.02 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327800305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.820 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds