Wall clock time and date at job start Tue Mar 31 2020 11:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.53002 * 109.47051 * 239.99975 * 2 1 3 5 5 C 1.53000 * 109.47051 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47145 * 60.00209 * 5 4 2 7 7 C 1.53002 * 109.46975 * 299.99837 * 6 5 4 8 8 H 1.08998 * 109.47292 * 300.00186 * 7 6 5 9 9 C 1.52999 * 109.46975 * 179.97438 * 7 6 5 10 10 N 1.46897 * 109.47165 * 65.00169 * 9 7 6 11 11 C 1.46903 * 111.00060 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38320 * 119.96576 * 269.71983 * 12 11 10 14 14 C 1.38279 * 120.14055 * 179.76258 * 13 12 11 15 15 C 1.38121 * 120.06625 * 0.51629 * 14 13 12 16 16 C 1.38860 * 119.93148 * 359.74429 * 15 14 13 17 17 O 1.35755 * 120.06973 * 179.97438 * 16 15 14 18 18 C 1.34832 * 116.99667 * 354.48523 * 17 16 15 19 19 H 1.07995 * 120.00554 * 5.06358 * 18 17 16 20 20 C 1.38660 * 119.99633 * 185.05749 * 18 17 16 21 21 N 1.31556 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99886 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47255 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47163 * 120.00189 * 22 20 18 25 25 H 1.48499 * 109.47150 * 240.00303 * 22 20 18 26 26 C 1.38085 * 119.96634 * 89.99757 * 12 11 10 27 27 C 1.52999 * 109.47145 * 120.00185 * 2 1 3 28 28 H 1.09000 * 109.47201 * 299.99960 * 1 2 3 29 29 H 1.09004 * 109.46703 * 60.00226 * 1 2 3 30 30 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47087 * 299.99539 * 3 2 1 33 33 H 1.09000 * 109.46990 * 59.99911 * 3 2 1 34 34 H 1.08998 * 109.47292 * 299.99919 * 4 2 1 35 35 H 1.08995 * 109.47454 * 60.00147 * 4 2 1 36 36 H 1.09008 * 109.47096 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.47006 * 300.00094 * 5 4 2 38 38 H 1.09004 * 109.47562 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.47262 * 60.00041 * 6 5 4 40 40 H 1.08998 * 109.47189 * 304.99930 * 9 7 6 41 41 H 1.09001 * 109.47010 * 185.00314 * 9 7 6 42 42 H 1.00896 * 110.99994 * 56.04644 * 10 9 7 43 43 H 1.08997 * 109.47198 * 59.99667 * 11 10 9 44 44 H 1.09003 * 109.47018 * 300.00180 * 11 10 9 45 45 H 1.08005 * 119.92876 * 0.02562 * 13 12 11 46 46 H 1.07997 * 119.97151 * 180.25535 * 14 13 12 47 47 H 1.08005 * 120.03714 * 179.71820 * 15 14 13 48 48 H 0.97001 * 120.00070 * 180.02562 * 21 20 18 49 49 H 1.07996 * 120.03129 * 359.95667 * 26 12 11 50 50 H 1.08998 * 109.47262 * 60.00041 * 27 2 1 51 51 H 1.09000 * 109.46953 * 300.00007 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4435 0.0003 7 6 3.5695 -0.7222 1.2495 8 1 3.9332 0.3053 1.2498 9 6 4.0784 -1.4442 2.4987 10 7 5.5425 -1.3417 2.5613 11 6 6.0677 -2.0247 3.7510 12 6 7.5692 -1.8990 3.7806 13 6 8.3552 -2.8611 3.1725 14 6 9.7331 -2.7467 3.1932 15 6 10.3291 -1.6763 3.8309 16 6 9.5430 -0.7116 4.4470 17 8 10.1258 0.3414 5.0750 18 6 11.4712 0.3329 5.1637 19 1 12.0397 -0.4444 4.6749 20 6 12.1248 1.3221 5.8826 21 7 11.4323 2.2693 6.4776 22 14 13.9887 1.3108 6.0049 23 1 14.5272 0.1498 5.2517 24 1 14.5303 2.5680 5.4292 25 1 14.3905 1.2059 7.4307 26 6 8.1590 -0.8265 4.4198 27 6 2.0400 -0.7213 1.2492 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.9333 -1.2361 -2.1388 37 1 3.9337 0.3057 -1.2487 38 1 5.1695 -1.4443 0.0003 39 1 3.7158 -2.4710 0.0000 40 1 3.7893 -2.4942 2.4546 41 1 3.6437 -0.9847 3.3864 42 1 5.8387 -0.3775 2.5380 43 1 5.7924 -3.0788 3.7161 44 1 5.6468 -1.5688 4.6472 45 1 7.8915 -3.7012 2.6767 46 1 10.3440 -3.4973 2.7139 47 1 11.4055 -1.5898 3.8507 48 1 11.8896 2.9616 6.9801 49 1 7.5449 -0.0776 4.8977 50 1 1.6767 -1.7489 1.2492 51 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335413927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:55 Heat of formation + Delta-G solvation = -38.757465 kcal Electronic energy + Delta-G solvation = -26121.126822 eV Core-core repulsion = 22598.359547 eV Total energy + Delta-G solvation = -3522.767275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.91900 -39.04051 -37.04987 -35.71088 -33.30196 -32.27174 -31.78651 -30.03623 -28.92912 -27.57800 -26.52588 -25.95786 -25.16132 -23.44370 -22.08552 -21.54207 -20.76810 -20.34438 -18.56171 -17.62921 -16.98855 -15.78739 -15.30206 -15.25014 -14.97395 -14.82779 -14.51159 -14.40025 -14.25081 -14.05524 -13.76069 -13.55860 -13.38474 -13.07307 -12.60303 -12.53174 -12.42124 -12.10017 -11.96991 -11.86414 -11.81156 -11.58983 -11.54308 -11.36368 -11.24559 -11.09603 -10.93262 -10.80150 -10.66901 -10.58553 -10.41368 -10.27193 -10.09590 -10.02703 -9.31593 -8.82704 -8.35374 -8.01568 -7.19945 -6.43075 -4.02167 2.13549 2.42114 3.13210 3.14728 3.20210 3.97948 4.18393 4.44620 4.48425 4.55478 4.73790 4.82871 5.01862 5.09165 5.12584 5.18377 5.20756 5.23738 5.34153 5.36203 5.39583 5.45904 5.47269 5.54884 5.57494 5.65144 5.68811 5.70303 5.76615 5.81262 5.84193 5.86108 5.90841 5.91613 6.00308 6.06020 6.12331 6.17378 6.22317 6.24663 6.35854 6.38288 6.45223 6.68866 6.93779 7.09821 7.12198 7.31214 7.41804 7.45943 7.52010 7.85646 8.02249 9.03036 9.73819 10.75303 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.002199 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.779771 B =12731.228989 C =13270.990067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.085 4.085 8 H 0.072 0.928 9 C 0.062 3.938 10 N -0.681 5.681 11 C 0.106 3.894 12 C -0.046 4.046 13 C -0.188 4.188 14 C -0.078 4.078 15 C -0.231 4.231 16 C 0.152 3.848 17 O -0.181 6.181 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.185 4.185 27 C -0.101 4.101 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.026 0.974 42 H 0.344 0.656 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.269 0.731 49 H 0.112 0.888 50 H 0.061 0.939 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 -6.358 -12.237 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.142 4.142 7 C -0.104 4.104 8 H 0.090 0.910 9 C -0.067 4.067 10 N -0.312 5.312 11 C -0.022 4.022 12 C -0.047 4.047 13 C -0.208 4.208 14 C -0.096 4.096 15 C -0.251 4.251 16 C 0.099 3.901 17 O -0.085 6.085 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.205 4.205 27 C -0.139 4.139 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.162 0.838 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.143 0.857 48 H 0.079 0.921 49 H 0.130 0.870 50 H 0.080 0.920 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.472 -6.490 -12.393 23.171 hybrid contribution 0.749 0.599 0.785 1.240 sum -17.722 -5.890 -11.608 21.989 Atomic orbital electron populations 1.21869 0.94915 1.01531 1.01549 1.20511 0.94859 0.95624 0.95413 1.21984 1.01799 0.95180 1.01332 1.21588 0.95983 1.00061 0.96797 1.21622 0.95196 1.01073 0.98255 1.21464 1.01621 0.98376 0.92750 1.21182 0.94543 0.99885 0.94804 0.90966 1.22014 0.88037 1.00476 0.96176 1.60501 1.08929 1.20851 1.40940 1.20782 0.91473 0.99178 0.90783 1.19168 0.93595 0.94541 0.97369 1.20414 0.93256 1.00827 1.06290 1.20746 0.94492 0.96746 0.97613 1.21190 1.00509 0.97561 1.05811 1.19308 0.92051 0.87425 0.91298 1.83978 1.22759 1.35974 1.65753 1.21361 0.78541 1.13164 1.33607 0.89076 1.25279 1.00473 0.95156 0.95682 1.70048 1.35940 1.12816 1.31196 0.85655 0.80769 0.78622 0.78423 1.19119 1.20177 1.20184 1.20029 0.92193 1.00565 1.07699 1.21592 0.95093 1.00284 0.96979 0.92774 0.92849 0.92831 0.91747 0.93026 0.92908 0.92241 0.92461 0.92354 0.91814 0.90537 0.92590 0.91306 0.95593 0.83812 0.90760 0.94835 0.87655 0.87536 0.85683 0.92147 0.86995 0.92049 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.47 37.16 0.31 -0.66 16 2 C -0.06 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.15 -1.16 7.78 37.16 0.29 -0.87 16 4 C -0.11 -0.83 4.73 -26.73 -0.13 -0.95 16 5 C -0.12 -1.07 5.65 -26.73 -0.15 -1.22 16 6 C -0.10 -1.01 5.09 -26.73 -0.14 -1.15 16 7 C -0.09 -0.80 2.06 -90.65 -0.19 -0.99 16 8 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 9 C 0.06 0.66 5.07 -3.83 -0.02 0.64 16 10 N -0.68 -8.81 5.95 -115.06 -0.68 -9.49 16 11 C 0.11 1.51 5.81 -4.98 -0.03 1.49 16 12 C -0.05 -0.82 5.39 -104.65 -0.56 -1.39 16 13 C -0.19 -3.34 9.70 -39.54 -0.38 -3.72 16 14 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 15 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 16 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.18 -5.20 9.76 0.03 0.00 -5.20 16 18 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 21 N -0.86 -25.52 13.67 55.48 0.76 -24.77 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 C -0.18 -3.91 9.65 -39.39 -0.38 -4.29 16 27 C -0.10 -0.84 4.01 -26.76 -0.11 -0.94 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 37 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 38 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.34 4.67 8.72 -39.29 -0.34 4.33 16 43 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 44 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 45 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -29.58 394.74 -10.39 -39.97 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.97 Total: 6.16 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -2.42 Total: -28.29 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.07 Total: -34.26 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.58 -10.39 -39.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335413927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.211 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds