Wall clock time and date at job start Tue Mar 31 2020 11:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47163 * 2 1 4 4 C 1.52998 * 109.46948 * 120.00127 * 2 1 3 5 5 C 1.53003 * 109.46948 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47226 * 300.00113 * 5 4 2 7 7 C 1.53001 * 109.46755 * 59.99914 * 6 5 4 8 8 H 1.08995 * 109.46993 * 60.00399 * 7 6 5 9 9 C 1.53006 * 109.46755 * 179.97438 * 7 6 5 10 10 N 1.46904 * 109.47218 * 295.00305 * 9 7 6 11 11 C 1.46898 * 111.00059 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.38318 * 119.96634 * 89.99901 * 12 11 10 14 14 C 1.38276 * 120.14065 * 180.02562 * 13 12 11 15 15 C 1.38119 * 120.06841 * 359.97438 * 14 13 12 16 16 C 1.38857 * 119.93126 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06981 * 180.02562 * 16 15 14 18 18 C 1.34825 * 117.00349 * 354.45665 * 17 16 15 19 19 H 1.08010 * 119.99750 * 5.06160 * 18 17 16 20 20 C 1.38653 * 120.00604 * 185.05685 * 18 17 16 21 21 N 1.31560 * 119.99553 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00312 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46860 * 90.00139 * 22 20 18 24 24 H 1.48497 * 109.47259 * 210.00475 * 22 20 18 25 25 H 1.48500 * 109.47202 * 330.00220 * 22 20 18 26 26 C 1.38081 * 119.96352 * 269.72610 * 12 11 10 27 27 C 1.52993 * 109.47344 * 300.00047 * 7 6 5 28 28 H 1.08995 * 109.46842 * 300.00013 * 1 2 3 29 29 H 1.09004 * 109.47059 * 59.99604 * 1 2 3 30 30 H 1.08991 * 109.46909 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47184 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47393 * 300.00296 * 3 2 1 33 33 H 1.09003 * 109.46641 * 60.00147 * 3 2 1 34 34 H 1.08999 * 109.46977 * 60.00677 * 4 2 1 35 35 H 1.08995 * 109.47235 * 299.99619 * 4 2 1 36 36 H 1.09004 * 109.47059 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47280 * 59.99757 * 5 4 2 38 38 H 1.09000 * 109.46700 * 299.99999 * 6 5 4 39 39 H 1.08996 * 109.46991 * 180.02562 * 6 5 4 40 40 H 1.09001 * 109.47050 * 175.00112 * 9 7 6 41 41 H 1.09006 * 109.46764 * 55.00003 * 9 7 6 42 42 H 1.00903 * 110.99409 * 303.95677 * 10 9 7 43 43 H 1.09002 * 109.46702 * 300.00042 * 11 10 9 44 44 H 1.08998 * 109.46766 * 59.99606 * 11 10 9 45 45 H 1.08008 * 119.93191 * 359.97438 * 13 12 11 46 46 H 1.08005 * 119.96717 * 180.02562 * 14 13 12 47 47 H 1.08004 * 120.03564 * 180.02562 * 15 14 13 48 48 H 0.97004 * 119.99803 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03566 * 0.02562 * 26 12 11 50 50 H 1.09003 * 109.47056 * 180.02562 * 27 7 6 51 51 H 1.09007 * 109.47072 * 300.00346 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0806 -1.4416 0.0002 7 6 3.5705 -0.7202 -1.2489 8 1 3.9335 0.3075 -1.2486 9 6 4.0816 -1.4407 -2.4982 10 7 5.5456 -1.3360 -2.5594 11 6 6.0729 -2.0174 -3.7492 12 6 7.5741 -1.8884 -3.7780 13 6 8.3617 -2.8460 -3.1649 14 6 9.7395 -2.7309 -3.1887 15 6 10.3335 -1.6590 -3.8257 16 6 9.5456 -0.6960 -4.4422 17 8 10.1264 0.3584 -5.0696 18 6 11.4653 0.4741 -4.9602 19 1 12.0350 -0.2968 -4.4625 20 6 12.1108 1.5826 -5.4865 21 7 11.4167 2.5218 -6.0923 22 14 13.9657 1.7425 -5.3355 23 1 14.6143 1.1146 -6.5146 24 1 14.3353 3.1794 -5.2738 25 1 14.4222 1.0605 -4.0978 26 6 8.1620 -0.8174 -4.4214 27 6 2.0406 -0.7208 -1.2493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 1.2491 35 1 1.6767 -0.2075 2.1392 36 1 3.9333 -1.2350 2.1393 37 1 3.9330 0.3071 1.2498 38 1 3.7176 -2.4693 0.0000 39 1 5.1705 -1.4415 0.0007 40 1 3.6470 -0.9812 -3.3860 41 1 3.7940 -2.4912 -2.4550 42 1 5.8404 -0.3713 -2.5352 43 1 5.7990 -3.0719 -3.7151 44 1 5.6521 -1.5615 -4.6453 45 1 7.8996 -3.6849 -2.6657 46 1 10.3518 -3.4804 -2.7093 47 1 11.4097 -1.5698 -3.8443 48 1 11.8682 3.2975 -6.4602 49 1 7.5466 -0.0723 -4.9034 50 1 1.6773 -0.2072 -2.1395 51 1 1.6776 -1.7486 -1.2495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335413932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:57 Heat of formation + Delta-G solvation = -38.650045 kcal Electronic energy + Delta-G solvation = -26142.846237 eV Core-core repulsion = 22620.083619 eV Total energy + Delta-G solvation = -3522.762617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.91254 -39.04017 -37.04847 -35.70765 -33.29704 -32.27031 -31.78116 -30.03405 -28.92691 -27.57363 -26.52234 -25.95553 -25.15896 -23.44044 -22.08033 -21.54198 -20.76516 -20.34125 -18.55665 -17.62686 -16.98601 -15.78233 -15.29779 -15.24825 -14.97117 -14.82475 -14.50474 -14.40468 -14.25046 -14.05524 -13.76394 -13.50076 -13.43166 -13.06602 -12.60071 -12.52316 -12.42400 -12.09635 -11.96245 -11.85602 -11.80807 -11.58649 -11.54416 -11.36004 -11.23486 -11.09071 -10.92834 -10.80069 -10.67501 -10.58453 -10.42169 -10.26728 -10.09108 -10.02638 -9.31634 -8.82191 -8.34975 -8.01524 -7.19821 -6.42848 -4.01995 2.13652 2.42360 3.13799 3.14783 3.19527 3.97870 4.18756 4.45094 4.48762 4.55825 4.74006 4.83183 5.02377 5.10366 5.13416 5.18529 5.20992 5.24287 5.34304 5.35894 5.39990 5.46276 5.47618 5.54994 5.57793 5.65281 5.69117 5.70674 5.77018 5.81377 5.84611 5.86587 5.91040 5.92054 6.00382 6.06506 6.12812 6.17823 6.22388 6.25074 6.35911 6.38876 6.45739 6.69018 6.93851 7.09622 7.12568 7.31251 7.41906 7.45973 7.52417 7.85743 8.02343 9.03149 9.73856 10.75448 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002252 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.481067 B =12429.663139 C =13022.904876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.085 4.085 8 H 0.072 0.928 9 C 0.062 3.938 10 N -0.681 5.681 11 C 0.106 3.894 12 C -0.046 4.046 13 C -0.189 4.189 14 C -0.078 4.078 15 C -0.231 4.231 16 C 0.152 3.848 17 O -0.181 6.181 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.185 4.185 27 C -0.101 4.101 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.068 0.932 42 H 0.344 0.656 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.269 0.731 49 H 0.112 0.888 50 H 0.059 0.941 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.484 -6.686 11.709 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.142 4.142 7 C -0.104 4.104 8 H 0.090 0.910 9 C -0.067 4.067 10 N -0.312 5.312 11 C -0.022 4.022 12 C -0.047 4.047 13 C -0.208 4.208 14 C -0.096 4.096 15 C -0.251 4.251 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.205 4.205 27 C -0.139 4.139 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.162 0.838 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.143 0.857 48 H 0.079 0.921 49 H 0.130 0.870 50 H 0.078 0.922 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.435 -6.814 11.860 22.956 hybrid contribution 0.749 0.679 -0.644 1.199 sum -17.687 -6.135 11.216 21.823 Atomic orbital electron populations 1.21867 0.94917 1.01527 1.01550 1.20512 0.94853 0.95628 0.95414 1.21986 1.01810 0.95179 1.01332 1.21588 0.95986 1.00056 0.96795 1.21624 0.95189 1.01083 0.98253 1.21465 1.01623 0.98373 0.92754 1.21191 0.94525 0.99902 0.94802 0.90961 1.22017 0.88037 1.00471 0.96177 1.60503 1.08917 1.20882 1.40927 1.20781 0.91460 0.99176 0.90787 1.19170 0.93601 0.94528 0.97377 1.20411 0.93246 1.00920 1.06222 1.20746 0.94506 0.96706 0.97633 1.21185 1.00489 0.97231 1.06190 1.19308 0.92013 0.88194 0.90567 1.83973 1.23313 1.39394 1.61749 1.21310 0.79216 1.07156 1.39031 0.89138 1.25275 1.00444 0.94561 0.96275 1.70042 1.36096 1.09146 1.34730 0.85722 0.80746 0.78026 0.78999 1.19923 1.20280 1.19213 1.20029 0.92158 1.00632 1.07671 1.21599 0.95084 1.00282 0.96975 0.92843 0.92783 0.92833 0.91737 0.92907 0.93027 0.92237 0.92466 0.92354 0.91808 0.92594 0.90531 0.95597 0.91314 0.83785 0.90761 0.94855 0.87656 0.87538 0.85692 0.92097 0.86994 0.92228 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.48 37.16 0.31 -0.66 16 2 C -0.06 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.15 -1.17 7.78 37.16 0.29 -0.88 16 4 C -0.11 -0.83 4.73 -26.73 -0.13 -0.96 16 5 C -0.12 -1.08 5.65 -26.73 -0.15 -1.23 16 6 C -0.10 -1.02 5.09 -26.73 -0.14 -1.16 16 7 C -0.09 -0.81 2.05 -90.62 -0.19 -1.00 16 8 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 9 C 0.06 0.66 5.08 -3.82 -0.02 0.64 16 10 N -0.68 -8.86 5.95 -115.05 -0.68 -9.54 16 11 C 0.11 1.52 5.81 -4.98 -0.03 1.49 16 12 C -0.05 -0.83 5.39 -104.65 -0.56 -1.39 16 13 C -0.19 -3.34 9.70 -39.54 -0.38 -3.72 16 14 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 15 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 16 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.18 -5.19 9.76 0.06 0.00 -5.19 16 18 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 19 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 22 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.18 -3.91 9.64 -39.39 -0.38 -4.29 16 27 C -0.10 -0.84 4.01 -26.74 -0.11 -0.95 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.56 4.80 -51.93 -0.25 0.31 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.34 4.72 8.72 -39.29 -0.34 4.37 16 43 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 44 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 45 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 47 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 48 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -29.56 394.74 -10.39 -39.95 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.97 Total: 6.30 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -2.42 Total: -28.35 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.07 Total: -34.31 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.56 -10.39 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335413932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.301 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds