Wall clock time and date at job start Tue Mar 31 2020 11:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.46992 * 2 1 4 4 C 1.38383 * 119.85255 * 265.23075 * 3 2 1 5 5 C 1.37940 * 120.14574 * 180.27426 * 4 3 2 6 6 C 1.39596 * 119.85067 * 359.75519 * 5 4 3 7 7 C 1.47842 * 120.14330 * 180.02562 * 6 5 4 8 8 O 1.21553 * 120.00039 * 150.58206 * 7 6 5 9 9 N 1.34770 * 119.99953 * 330.58088 * 7 6 5 10 10 C 1.46503 * 120.00069 * 6.33315 * 9 7 6 11 11 C 1.50693 * 109.47407 * 98.67238 * 10 9 7 12 12 H 1.08006 * 120.00211 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00092 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99907 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47112 * 60.00506 * 15 13 11 17 17 H 1.48494 * 109.46957 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47151 * 300.00315 * 15 13 11 19 19 C 1.46507 * 119.99983 * 186.32928 * 9 7 6 20 20 C 1.52998 * 109.46958 * 95.73691 * 19 9 7 21 21 C 1.52995 * 109.47224 * 174.45761 * 20 19 9 22 22 C 1.52999 * 109.47043 * 294.45790 * 20 19 9 23 23 C 1.39562 * 119.71309 * 359.97438 * 6 5 4 24 24 C 1.37977 * 119.85022 * 0.02562 * 23 6 5 25 25 C 1.50700 * 119.92657 * 179.97438 * 24 23 6 26 26 C 1.52994 * 109.47565 * 265.00019 * 25 24 23 27 27 H 1.08995 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47562 * 300.00280 * 1 2 3 29 29 H 1.09003 * 109.47163 * 59.99695 * 1 2 3 30 30 H 1.08997 * 109.47140 * 240.00021 * 2 1 3 31 31 H 1.08994 * 109.47165 * 119.99466 * 2 1 3 32 32 H 1.08000 * 119.92826 * 0.02562 * 4 3 2 33 33 H 1.07991 * 120.07464 * 179.72197 * 5 4 3 34 34 H 1.09005 * 109.46704 * 218.67431 * 10 9 7 35 35 H 1.08993 * 109.46702 * 338.67041 * 10 9 7 36 36 H 0.96995 * 120.00512 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.46671 * 215.73387 * 19 9 7 38 38 H 1.08991 * 109.47101 * 335.73532 * 19 9 7 39 39 H 1.09001 * 109.47634 * 54.45699 * 20 19 9 40 40 H 1.09003 * 109.47086 * 60.00215 * 21 20 19 41 41 H 1.09003 * 109.47374 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47454 * 300.00052 * 21 20 19 43 43 H 1.09003 * 109.47420 * 65.42348 * 22 20 19 44 44 H 1.08999 * 109.46981 * 185.41665 * 22 20 19 45 45 H 1.08992 * 109.47375 * 305.41735 * 22 20 19 46 46 H 1.07999 * 120.07505 * 180.02562 * 23 6 5 47 47 H 1.09000 * 109.47100 * 145.00052 * 25 24 23 48 48 H 1.08996 * 109.47145 * 25.00586 * 25 24 23 49 49 H 1.08993 * 109.47466 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.47352 * 300.00441 * 26 25 24 51 51 H 1.09000 * 109.46884 * 59.99901 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0370 -1.1961 5 6 2.8216 3.3354 -1.2026 6 6 2.9612 4.0296 0.0004 7 6 3.4592 5.4217 0.0009 8 8 3.1055 6.1934 0.8708 9 7 4.3053 5.8350 -0.9633 10 6 4.6229 4.9508 -2.0875 11 6 3.7785 5.3279 -3.2773 12 1 3.0758 6.1447 -3.2037 13 6 3.9038 4.6307 -4.4603 14 7 4.7598 3.6365 -4.5501 15 14 2.8565 5.0977 -5.9349 16 1 3.1382 6.5050 -6.3164 17 1 3.1786 4.2016 -7.0744 18 1 1.4199 4.9574 -5.5861 19 6 4.9074 7.1684 -0.8873 20 6 6.2928 7.0666 -0.2461 21 6 6.9777 8.4339 -0.2919 22 6 6.1495 6.6165 1.2091 23 6 2.6277 3.4042 1.2027 24 6 2.1630 2.1051 1.1952 25 6 1.8029 1.4279 2.4924 26 6 2.9973 0.6119 2.9906 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.2475 1.4988 -2.1261 33 1 3.0781 3.8137 -2.1363 34 1 5.6776 5.0531 -2.3433 35 1 4.4155 3.9182 -1.8073 36 1 4.8477 3.1458 -5.3821 37 1 5.0012 7.5824 -1.8912 38 1 4.2746 7.8189 -0.2837 39 1 6.8941 6.3406 -0.7934 40 1 6.3765 9.1599 0.2555 41 1 7.9646 8.3615 0.1653 42 1 7.0799 8.7547 -1.3286 43 1 5.7502 5.6026 1.2382 44 1 7.1257 6.6365 1.6934 45 1 5.4704 7.2896 1.7324 46 1 2.7330 3.9360 2.1368 47 1 0.9518 0.7659 2.3326 48 1 1.5423 2.1815 3.2355 49 1 2.7369 0.1225 3.9291 50 1 3.2578 -0.1417 2.2475 51 1 3.8483 1.2739 3.1504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341766828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:03 Heat of formation + Delta-G solvation = -23.607850 kcal Electronic energy + Delta-G solvation = -27945.146086 eV Core-core repulsion = 24423.035748 eV Total energy + Delta-G solvation = -3522.110339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01638 -38.54481 -35.91875 -34.96859 -33.64288 -33.17786 -32.38145 -29.51814 -29.07529 -27.52790 -26.78269 -25.86670 -24.25922 -23.19966 -22.97230 -21.23702 -20.74137 -19.65478 -18.55139 -16.65359 -16.31196 -15.98501 -15.45476 -15.21453 -14.65549 -14.57134 -14.19617 -14.01904 -13.61895 -13.50938 -13.39710 -13.29011 -12.90981 -12.85368 -12.41890 -12.38108 -12.24337 -12.14533 -11.89919 -11.79198 -11.42314 -11.26904 -11.16394 -11.12353 -11.03585 -10.86948 -10.83305 -10.67998 -10.57178 -10.46934 -10.31668 -10.10246 -9.82750 -9.60841 -8.97565 -8.68762 -8.28294 -7.90815 -7.65522 -6.29212 -4.38712 1.52371 1.95391 3.19312 3.24421 3.27543 3.53451 3.93992 4.23865 4.42486 4.94257 5.00602 5.07181 5.11816 5.14244 5.27879 5.33190 5.40247 5.43466 5.51542 5.53650 5.56670 5.67759 5.76703 5.89639 5.90587 5.91568 5.93877 5.96008 6.01360 6.06261 6.16646 6.18621 6.22231 6.29370 6.32856 6.38712 6.39106 6.43625 6.54599 6.64761 6.66247 6.73598 6.81794 6.97691 7.10971 7.18907 7.21347 7.51351 7.60772 7.66734 7.93505 8.36151 8.71261 9.03998 9.29679 10.74964 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.005611 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.272254 B = 4989.135143 C = 7433.771584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.065 4.065 4 C -0.131 4.131 5 C -0.095 4.095 6 C -0.136 4.136 7 C 0.558 3.442 8 O -0.571 6.571 9 N -0.586 5.586 10 C 0.206 3.794 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.882 5.882 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.123 3.877 20 C -0.112 4.112 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.065 4.065 24 C -0.110 4.110 25 C -0.081 4.081 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.202 0.798 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.121 0.879 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.056 0.944 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -4.569 9.108 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.066 4.066 4 C -0.149 4.149 5 C -0.112 4.112 6 C -0.139 4.139 7 C 0.348 3.652 8 O -0.453 6.453 9 N -0.315 5.315 10 C 0.087 3.913 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.518 5.518 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.000 4.000 20 C -0.132 4.132 21 C -0.199 4.199 22 C -0.194 4.194 23 C -0.084 4.084 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.204 4.204 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.218 0.782 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.139 0.861 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.697 -4.309 9.398 10.477 hybrid contribution -0.382 0.180 -1.079 1.159 sum -2.079 -4.128 8.318 9.516 Atomic orbital electron populations 1.21752 0.95044 1.01218 1.02344 1.20602 0.95984 0.93304 1.02639 1.19863 0.98203 0.95562 0.92928 1.21064 1.00938 0.95859 0.97013 1.23466 0.91674 0.94435 1.01654 1.19942 1.04821 0.94762 0.94385 1.18277 0.78603 0.87108 0.81208 1.90646 1.59821 1.55764 1.39079 1.48009 1.43538 1.16269 1.23688 1.20332 0.97099 0.91213 0.82679 1.21428 1.23026 1.17790 0.95935 0.91766 1.24978 0.95247 0.94681 0.98634 1.69919 1.34369 1.20085 1.27468 0.86574 0.80846 0.78699 0.81623 1.19959 1.20989 1.19841 1.21378 0.92596 0.84985 1.01055 1.21489 0.97325 0.97467 0.96914 1.21743 0.99822 0.96700 1.01601 1.21740 1.00318 1.01592 0.95718 1.20943 0.96604 0.93676 0.97196 1.19433 1.02967 0.94241 0.94376 1.20497 0.98321 0.98937 0.94079 1.21770 0.98269 1.00008 1.00381 0.92767 0.92553 0.92420 0.91187 0.90961 0.86092 0.78158 0.95041 0.91229 0.92153 0.90512 0.90662 0.91011 0.92861 0.92990 0.92611 0.93135 0.93759 0.92529 0.86113 0.91045 0.91490 0.92852 0.92504 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.72 37.16 0.36 -1.25 16 2 C -0.09 -1.08 5.38 -27.88 -0.15 -1.23 16 3 C -0.07 -1.03 5.14 -104.53 -0.54 -1.56 16 4 C -0.13 -2.38 9.66 -39.64 -0.38 -2.77 16 5 C -0.10 -1.99 7.50 -39.18 -0.29 -2.28 16 6 C -0.14 -2.82 5.59 -104.97 -0.59 -3.41 16 7 C 0.56 12.32 6.12 -12.33 -0.08 12.24 16 8 O -0.57 -13.32 15.69 5.32 0.08 -13.23 16 9 N -0.59 -12.60 2.28 -176.18 -0.40 -13.00 16 10 C 0.21 4.82 4.67 -5.20 -0.02 4.79 16 11 C -0.54 -13.59 7.53 -34.44 -0.26 -13.85 16 12 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 13 C 0.07 1.74 5.34 -17.82 -0.10 1.65 16 14 N -0.88 -22.93 13.29 55.43 0.74 -22.19 16 15 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.12 2.34 4.97 -4.04 -0.02 2.32 16 20 C -0.11 -1.85 3.12 -90.62 -0.28 -2.13 16 21 C -0.14 -1.89 9.19 37.15 0.34 -1.55 16 22 C -0.14 -2.23 8.26 37.16 0.31 -1.92 16 23 C -0.07 -1.18 9.22 -39.18 -0.36 -1.55 16 24 C -0.11 -1.72 5.13 -104.68 -0.54 -2.26 16 25 C -0.08 -0.99 5.37 -27.89 -0.15 -1.14 16 26 C -0.15 -1.61 9.72 37.15 0.36 -1.25 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 6.78 -51.93 -0.35 0.26 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 31 H 0.07 0.79 5.57 -51.93 -0.29 0.51 16 32 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.20 4.69 3.03 -52.49 -0.16 4.53 16 34 H 0.03 0.78 7.96 -51.93 -0.41 0.37 16 35 H 0.07 1.68 3.99 -52.26 -0.21 1.47 16 36 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 38 H 0.07 1.46 7.19 -51.93 -0.37 1.08 16 39 H 0.07 1.25 7.97 -51.93 -0.41 0.84 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.92 7.02 -51.93 -0.36 0.56 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.12 2.12 7.92 -52.49 -0.42 1.71 16 47 H 0.07 0.78 5.61 -51.93 -0.29 0.49 16 48 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.62 6.76 -51.93 -0.35 0.27 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -27.03 395.21 -9.69 -36.72 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.66 Total: 8.10 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.39 Total: -17.13 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.33 Total: -35.19 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.03 -9.69 -36.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341766828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.116 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds