Wall clock time and date at job start Tue Mar 31 2020 11:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.46992 * 2 1 4 4 C 1.38383 * 119.85255 * 265.23075 * 3 2 1 5 5 C 1.37940 * 120.14574 * 180.27426 * 4 3 2 6 6 C 1.39596 * 119.85067 * 359.75519 * 5 4 3 7 7 C 1.47842 * 120.14330 * 180.02562 * 6 5 4 8 8 O 1.21553 * 120.00039 * 150.58206 * 7 6 5 9 9 N 1.34770 * 119.99953 * 330.58088 * 7 6 5 10 10 C 1.46503 * 120.00069 * 6.33315 * 9 7 6 11 11 C 1.50693 * 109.47407 * 98.67238 * 10 9 7 12 12 H 1.08006 * 120.00211 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00092 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99907 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47112 * 60.00506 * 15 13 11 17 17 H 1.48494 * 109.46957 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47151 * 300.00315 * 15 13 11 19 19 C 1.46507 * 119.99983 * 186.32928 * 9 7 6 20 20 C 1.52998 * 109.46958 * 95.73691 * 19 9 7 21 21 C 1.52995 * 109.47224 * 174.45761 * 20 19 9 22 22 C 1.52999 * 109.47043 * 294.45790 * 20 19 9 23 23 C 1.39562 * 119.71309 * 359.97438 * 6 5 4 24 24 C 1.37977 * 119.85022 * 0.02562 * 23 6 5 25 25 C 1.50700 * 119.92657 * 179.97438 * 24 23 6 26 26 C 1.52994 * 109.47565 * 265.00019 * 25 24 23 27 27 H 1.08995 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47562 * 300.00280 * 1 2 3 29 29 H 1.09003 * 109.47163 * 59.99695 * 1 2 3 30 30 H 1.08997 * 109.47140 * 240.00021 * 2 1 3 31 31 H 1.08994 * 109.47165 * 119.99466 * 2 1 3 32 32 H 1.08000 * 119.92826 * 0.02562 * 4 3 2 33 33 H 1.07991 * 120.07464 * 179.72197 * 5 4 3 34 34 H 1.09005 * 109.46704 * 218.67431 * 10 9 7 35 35 H 1.08993 * 109.46702 * 338.67041 * 10 9 7 36 36 H 0.96995 * 120.00512 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.46671 * 215.73387 * 19 9 7 38 38 H 1.08991 * 109.47101 * 335.73532 * 19 9 7 39 39 H 1.09001 * 109.47634 * 54.45699 * 20 19 9 40 40 H 1.09003 * 109.47086 * 60.00215 * 21 20 19 41 41 H 1.09003 * 109.47374 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47454 * 300.00052 * 21 20 19 43 43 H 1.09003 * 109.47420 * 65.42348 * 22 20 19 44 44 H 1.08999 * 109.46981 * 185.41665 * 22 20 19 45 45 H 1.08992 * 109.47375 * 305.41735 * 22 20 19 46 46 H 1.07999 * 120.07505 * 180.02562 * 23 6 5 47 47 H 1.09000 * 109.47100 * 145.00052 * 25 24 23 48 48 H 1.08996 * 109.47145 * 25.00586 * 25 24 23 49 49 H 1.08993 * 109.47466 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.47352 * 300.00441 * 26 25 24 51 51 H 1.09000 * 109.46884 * 59.99901 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0370 -1.1961 5 6 2.8216 3.3354 -1.2026 6 6 2.9612 4.0296 0.0004 7 6 3.4592 5.4217 0.0009 8 8 3.1055 6.1934 0.8708 9 7 4.3053 5.8350 -0.9633 10 6 4.6229 4.9508 -2.0875 11 6 3.7785 5.3279 -3.2773 12 1 3.0758 6.1447 -3.2037 13 6 3.9038 4.6307 -4.4603 14 7 4.7598 3.6365 -4.5501 15 14 2.8565 5.0977 -5.9349 16 1 3.1382 6.5050 -6.3164 17 1 3.1786 4.2016 -7.0744 18 1 1.4199 4.9574 -5.5861 19 6 4.9074 7.1684 -0.8873 20 6 6.2928 7.0666 -0.2461 21 6 6.9777 8.4339 -0.2919 22 6 6.1495 6.6165 1.2091 23 6 2.6277 3.4042 1.2027 24 6 2.1630 2.1051 1.1952 25 6 1.8029 1.4279 2.4924 26 6 2.9973 0.6119 2.9906 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.2475 1.4988 -2.1261 33 1 3.0781 3.8137 -2.1363 34 1 5.6776 5.0531 -2.3433 35 1 4.4155 3.9182 -1.8073 36 1 4.8477 3.1458 -5.3821 37 1 5.0012 7.5824 -1.8912 38 1 4.2746 7.8189 -0.2837 39 1 6.8941 6.3406 -0.7934 40 1 6.3765 9.1599 0.2555 41 1 7.9646 8.3615 0.1653 42 1 7.0799 8.7547 -1.3286 43 1 5.7502 5.6026 1.2382 44 1 7.1257 6.6365 1.6934 45 1 5.4704 7.2896 1.7324 46 1 2.7330 3.9360 2.1368 47 1 0.9518 0.7659 2.3326 48 1 1.5423 2.1815 3.2355 49 1 2.7369 0.1225 3.9291 50 1 3.2578 -0.1417 2.2475 51 1 3.8483 1.2739 3.1504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341766828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:02 Heat of formation + Delta-G solvation = -34.065887 kcal Electronic energy + Delta-G solvation = -27945.599581 eV Core-core repulsion = 24423.035748 eV Total energy + Delta-G solvation = -3522.563833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58212 -40.00361 -37.52995 -36.47083 -35.08080 -34.27312 -34.18809 -30.82683 -30.39276 -29.31107 -28.06815 -27.30898 -25.54931 -24.79897 -24.36184 -22.42577 -22.12701 -21.04036 -20.17619 -18.59980 -17.85239 -17.59579 -16.79139 -16.62176 -16.36791 -16.16364 -15.56250 -15.40905 -14.86716 -14.78046 -14.61849 -14.51415 -14.42998 -14.15107 -14.12423 -13.72781 -13.49224 -13.34345 -13.13695 -13.00395 -12.85634 -12.76054 -12.66308 -12.57711 -12.31792 -12.22049 -12.09918 -11.97731 -11.90223 -11.87540 -11.65517 -11.57018 -11.53026 -11.21978 -10.75280 -10.52608 -9.75187 -9.43180 -9.32110 -8.24351 -6.40366 0.04754 0.51627 1.40894 1.42185 1.49562 1.90307 2.26634 2.41886 2.90047 3.04308 3.67474 3.82830 3.90928 3.96541 4.02078 4.06663 4.15965 4.19163 4.34323 4.51145 4.55782 4.58176 4.62728 4.63622 4.65527 4.70884 4.75968 4.82910 4.85467 4.90732 4.96632 4.97539 5.02943 5.06746 5.08988 5.12658 5.16933 5.21688 5.25056 5.31751 5.37312 5.37603 5.42042 5.51071 5.59924 5.62223 5.64200 5.78216 5.83837 5.98591 6.13422 6.53405 6.76823 7.24432 7.36060 8.79338 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.005611 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.272254 B = 4989.135143 C = 7433.771584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.055 4.055 4 C -0.140 4.140 5 C -0.118 4.118 6 C -0.162 4.162 7 C 0.553 3.447 8 O -0.591 6.591 9 N -0.589 5.589 10 C 0.222 3.778 11 C -0.551 4.551 12 H 0.050 0.950 13 C 0.034 3.966 14 N -0.905 5.905 15 Si 0.951 3.049 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.273 1.273 19 C 0.119 3.881 20 C -0.107 4.107 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.072 4.072 24 C -0.100 4.100 25 C -0.080 4.080 26 C -0.145 4.145 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.175 0.825 34 H 0.011 0.989 35 H 0.066 0.934 36 H 0.272 0.728 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.123 0.877 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 -6.084 10.243 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.055 4.055 4 C -0.158 4.158 5 C -0.136 4.136 6 C -0.164 4.164 7 C 0.344 3.656 8 O -0.475 6.475 9 N -0.317 5.317 10 C 0.102 3.898 11 C -0.589 4.589 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.543 5.543 15 Si 0.776 3.224 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.003 4.003 20 C -0.127 4.127 21 C -0.191 4.191 22 C -0.185 4.185 23 C -0.091 4.091 24 C -0.100 4.100 25 C -0.117 4.117 26 C -0.202 4.202 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.191 0.809 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.077 0.923 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.333 -5.814 10.531 12.253 hybrid contribution -0.213 0.596 -1.374 1.513 sum -2.546 -5.217 9.157 10.842 Atomic orbital electron populations 1.21746 0.93697 1.02792 1.01907 1.20707 0.96973 0.90669 1.04022 1.20258 0.96202 0.97282 0.91779 1.21187 1.01117 0.94991 0.98515 1.23155 0.93969 0.95840 1.00607 1.19961 1.06694 0.94341 0.95445 1.18587 0.78338 0.87787 0.80871 1.90606 1.60665 1.56474 1.39751 1.48036 1.43623 1.16834 1.23173 1.20034 0.95426 0.91463 0.82859 1.21467 1.23015 1.17493 0.96881 0.93154 1.25567 0.96099 0.94494 1.00667 1.69993 1.35398 1.20757 1.28136 0.85708 0.79288 0.78456 0.78927 1.19788 1.20143 1.19834 1.21537 0.94043 0.83805 1.00957 1.21441 0.95542 0.99246 0.96460 1.21695 1.00556 0.94551 1.02323 1.21657 1.01416 0.99714 0.95732 1.21093 0.96865 0.94882 0.96266 1.19873 1.00736 0.93164 0.96258 1.20605 0.99627 0.99417 0.92028 1.21760 0.97106 0.99654 1.01698 0.90215 0.92202 0.93719 0.90651 0.88808 0.85665 0.80895 0.97069 0.91710 0.91916 0.91057 0.91146 0.92316 0.92050 0.90947 0.92218 0.95757 0.91096 0.93147 0.85910 0.88906 0.90835 0.90262 0.92286 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.72 71.98 0.70 -2.01 16 2 C -0.09 -1.87 5.38 29.85 0.16 -1.71 16 3 C -0.05 -1.65 5.14 -19.80 -0.10 -1.76 16 4 C -0.14 -5.18 9.66 22.23 0.21 -4.96 16 5 C -0.12 -5.17 7.50 22.53 0.17 -5.00 16 6 C -0.16 -6.98 5.59 -20.09 -0.11 -7.09 16 7 C 0.55 25.67 6.12 86.79 0.53 26.20 16 8 O -0.59 -28.69 15.69 -3.88 -0.06 -28.76 16 9 N -0.59 -26.74 2.28 -829.59 -1.89 -28.64 16 10 C 0.22 11.01 4.67 85.63 0.40 11.41 16 11 C -0.55 -28.74 7.53 25.60 0.19 -28.55 16 12 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 13 C 0.03 1.76 5.34 84.66 0.45 2.22 16 14 N -0.91 -48.21 13.29 21.45 0.28 -47.92 16 15 Si 0.95 41.17 29.54 68.60 2.03 43.20 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C 0.12 4.74 4.97 86.38 0.43 5.17 16 20 C -0.11 -3.58 3.12 -10.80 -0.03 -3.62 16 21 C -0.13 -3.43 9.19 71.98 0.66 -2.77 16 22 C -0.13 -4.21 8.26 71.98 0.59 -3.62 16 23 C -0.07 -2.65 9.22 22.53 0.21 -2.44 16 24 C -0.10 -3.01 5.13 -19.90 -0.10 -3.11 16 25 C -0.08 -1.70 5.37 29.85 0.16 -1.54 16 26 C -0.15 -2.71 9.72 71.98 0.70 -2.01 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.08 6.78 -2.39 -0.02 1.07 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.58 8.05 -2.39 -0.02 1.57 16 31 H 0.09 1.67 5.57 -2.39 -0.01 1.65 16 32 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 33 H 0.17 8.59 3.03 -2.92 -0.01 8.58 16 34 H 0.01 0.59 7.96 -2.38 -0.02 0.57 16 35 H 0.07 3.33 3.99 -2.70 -0.01 3.32 16 36 H 0.27 13.69 8.31 -92.71 -0.77 12.91 16 37 H 0.07 2.85 8.11 -2.39 -0.02 2.83 16 38 H 0.07 2.84 7.19 -2.39 -0.02 2.82 16 39 H 0.06 2.11 7.97 -2.39 -0.02 2.09 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.02 0.90 7.02 -2.39 -0.02 0.88 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.12 4.38 7.92 -2.91 -0.02 4.35 16 47 H 0.09 1.63 5.61 -2.39 -0.01 1.62 16 48 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.08 6.76 -2.39 -0.02 1.06 16 51 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -60.64 395.21 6.48 -54.16 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.90 Total: 33.15 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.22 Total: -25.19 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.61 Total: -76.56 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -60.64 6.48 -54.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341766828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.093 kcal (2) G-P(sol) polarization free energy of solvation -60.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds