Wall clock time and date at job start Tue Mar 31 2020 11:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99973 * 2 1 4 4 C 1.38238 * 120.00283 * 180.02562 * 3 2 1 5 5 C 1.38238 * 119.99432 * 0.25355 * 4 3 2 6 6 C 1.50707 * 119.99833 * 179.72431 * 5 4 3 7 7 C 1.52998 * 109.46745 * 90.00346 * 6 5 4 8 8 C 1.53123 * 109.52387 * 294.87318 * 7 6 5 9 9 C 1.53044 * 109.27614 * 182.50842 * 8 7 6 10 10 N 1.46849 * 109.57774 * 59.08010 * 9 8 7 11 11 C 1.46892 * 111.00096 * 174.19157 * 10 9 8 12 12 C 1.52994 * 109.47358 * 199.93174 * 11 10 9 13 13 O 1.42901 * 109.47178 * 64.58937 * 12 11 10 14 14 C 1.42902 * 114.00216 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47038 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00272 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99584 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99832 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00315 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47233 * 90.00305 * 19 17 15 21 21 H 1.48499 * 109.47318 * 210.00153 * 19 17 15 22 22 H 1.48501 * 109.47343 * 330.00374 * 19 17 15 23 23 C 1.46848 * 111.19968 * 298.29485 * 10 9 8 24 24 C 1.53038 * 109.52468 * 61.74042 * 23 10 9 25 25 C 1.38235 * 120.00270 * 359.49274 * 5 4 3 26 26 C 1.38234 * 119.99704 * 0.48341 * 25 5 4 27 27 H 1.09000 * 109.46959 * 89.99929 * 1 2 3 28 28 H 1.09000 * 109.46775 * 210.00080 * 1 2 3 29 29 H 1.09000 * 109.47080 * 330.00046 * 1 2 3 30 30 H 1.07997 * 120.00322 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.00465 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47015 * 210.00428 * 6 5 4 33 33 H 1.09002 * 109.47281 * 330.00646 * 6 5 4 34 34 H 1.08997 * 109.52603 * 55.00199 * 7 6 5 35 35 H 1.09002 * 109.50063 * 302.38286 * 8 7 6 36 36 H 1.09000 * 109.50555 * 62.50130 * 8 7 6 37 37 H 1.08999 * 109.40818 * 299.06768 * 9 8 7 38 38 H 1.08992 * 109.45421 * 179.12728 * 9 8 7 39 39 H 1.09000 * 109.47658 * 319.93398 * 11 10 9 40 40 H 1.09008 * 109.46932 * 79.93157 * 11 10 9 41 41 H 1.09004 * 109.47701 * 184.58954 * 12 11 10 42 42 H 1.09001 * 109.47357 * 304.59018 * 12 11 10 43 43 H 1.09004 * 109.46811 * 300.00126 * 14 13 12 44 44 H 1.09000 * 109.47029 * 59.99604 * 14 13 12 45 45 H 0.96993 * 120.00236 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.46197 * 301.72350 * 23 10 9 47 47 H 1.08999 * 109.45594 * 181.75067 * 23 10 9 48 48 H 1.08996 * 109.50408 * 180.88379 * 24 23 10 49 49 H 1.09000 * 109.50571 * 60.76084 * 24 23 10 50 50 H 1.08005 * 120.00145 * 180.25195 * 25 5 4 51 51 H 1.08000 * 120.00057 * 179.76265 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0064 6 6 5.7787 0.0000 -0.0132 7 6 6.2952 -0.0033 1.4269 8 6 5.8965 1.3044 2.1166 9 6 6.4692 1.3222 3.5357 10 7 7.9316 1.2029 3.4778 11 6 8.5255 1.3546 4.8127 12 6 10.0045 1.7207 4.6744 13 8 10.1220 3.0015 4.0517 14 6 11.4704 3.4399 3.8738 15 6 11.4753 4.7942 3.2128 16 1 10.5421 5.2721 2.9540 17 6 12.6712 5.4226 2.9375 18 7 12.6755 6.6043 2.3602 19 14 14.2854 4.5957 3.3845 20 1 14.7467 3.7621 2.2453 21 1 15.3060 5.6318 3.6846 22 1 14.0871 3.7356 4.5787 23 6 8.3369 -0.0674 2.8626 24 6 7.8215 -0.1259 1.4229 25 6 3.5805 -1.1972 -0.0011 26 6 2.1982 -1.1971 0.0000 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 -0.0010 32 1 6.1397 -0.8888 -0.5308 33 1 6.1397 0.8912 -0.5266 34 1 5.8635 -0.8461 1.9668 35 1 6.2949 2.1487 1.5538 36 1 4.8098 1.3760 2.1607 37 1 6.0589 0.4863 4.1023 38 1 6.2002 2.2587 4.0240 39 1 8.0049 2.1442 5.3545 40 1 8.4330 0.4165 5.3602 41 1 10.4648 1.7533 5.6620 42 1 10.5086 0.9720 4.0633 43 1 11.9613 3.5080 4.8447 44 1 12.0045 2.7267 3.2459 45 1 13.5168 7.0465 2.1668 46 1 7.9179 -0.8968 3.4324 47 1 9.4245 -0.1399 2.8623 48 1 8.1091 -1.0755 0.9717 49 1 8.2510 0.6952 0.8489 50 1 4.1206 -2.1325 -0.0015 51 1 1.6582 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343894758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:10 Heat of formation + Delta-G solvation = -59.616265 kcal Electronic energy + Delta-G solvation = -26199.541177 eV Core-core repulsion = 22675.869396 eV Total energy + Delta-G solvation = -3523.671781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77652 -39.83300 -38.45386 -36.23032 -34.84341 -33.63673 -31.96262 -31.65594 -31.14545 -29.84820 -28.44281 -26.19072 -24.20935 -23.95940 -23.66496 -23.39381 -22.18717 -21.33599 -20.54700 -19.02825 -17.47968 -17.30635 -16.94887 -16.49977 -16.36516 -16.02625 -15.95269 -15.75945 -15.34105 -15.13968 -14.74941 -14.73685 -14.52412 -14.25730 -14.19773 -14.01818 -13.74846 -13.41936 -13.16673 -13.14135 -12.95613 -12.76475 -12.62238 -12.55618 -12.35810 -12.19221 -12.09588 -11.90570 -11.78889 -11.74584 -11.55101 -11.32715 -11.16983 -11.02628 -10.90595 -10.26298 -9.77054 -9.29820 -9.08814 -8.35935 -6.43194 0.46965 0.54274 1.32645 1.36259 1.47180 2.30071 2.86360 2.95912 2.96501 3.17470 3.74057 3.81516 3.89175 4.00733 4.06549 4.15136 4.20177 4.24782 4.31826 4.33940 4.40584 4.47080 4.52171 4.55111 4.60158 4.62566 4.65524 4.67711 4.75740 4.80244 4.84153 4.88296 4.91335 4.94172 4.96853 5.00228 5.04144 5.10680 5.16000 5.22798 5.26309 5.28901 5.36465 5.46366 5.53655 5.58408 5.75271 5.81068 5.96689 6.18773 6.23338 6.30457 6.60996 6.84095 7.21425 8.81441 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.002267 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.923128 B =12349.224426 C =12801.351631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.089 4.089 6 C -0.072 4.072 7 C -0.068 4.068 8 C -0.106 4.106 9 C 0.062 3.938 10 N -0.555 5.555 11 C 0.066 3.934 12 C 0.056 3.944 13 O -0.393 6.393 14 C 0.180 3.820 15 C -0.541 4.541 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.943 5.943 19 Si 0.958 3.042 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.246 1.246 23 C 0.057 3.943 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.010 0.990 44 H 0.006 0.994 45 H 0.272 0.728 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.050 0.950 50 H 0.134 0.866 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 -22.011 -2.012 30.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.150 4.150 4 C -0.144 4.144 5 C -0.089 4.089 6 C -0.109 4.109 7 C -0.087 4.087 8 C -0.144 4.144 9 C -0.066 4.066 10 N -0.280 5.280 11 C -0.061 4.061 12 C -0.021 4.021 13 O -0.312 6.312 14 C 0.104 3.896 15 C -0.579 4.579 16 H 0.045 0.955 17 C -0.188 4.188 18 N -0.583 5.583 19 Si 0.779 3.221 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.169 1.169 23 C -0.071 4.071 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.145 4.145 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.023 0.977 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.069 0.931 50 H 0.152 0.848 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.790 -21.376 -2.424 29.917 hybrid contribution 0.734 -0.126 0.516 0.906 sum -20.056 -21.502 -1.908 29.465 Atomic orbital electron populations 1.20814 0.89797 1.03410 1.02864 1.20231 0.97309 0.93126 0.99750 1.21248 0.94180 0.98377 1.01154 1.21217 0.94592 0.97984 1.00560 1.19967 0.95821 0.93355 0.99778 1.20623 0.90595 1.03139 0.96575 1.21055 0.94803 0.97560 0.95281 1.21634 0.99971 0.97848 0.94956 1.22046 0.86529 1.00437 0.97580 1.61705 1.09457 1.35288 1.21558 1.22055 0.93399 1.00799 0.89892 1.22674 0.97335 0.85680 0.96442 1.87962 1.27287 1.34797 1.81155 1.20271 0.81486 0.93310 0.94553 1.21151 0.93700 1.02771 1.40244 0.95487 1.25875 1.03433 0.95378 0.94079 1.70039 1.28605 1.16337 1.43296 0.85579 0.77440 0.78880 0.80237 1.18459 1.19743 1.16922 1.22127 1.00162 0.89141 0.95653 1.21630 0.95177 1.02193 0.95719 1.21249 0.94503 0.97878 1.00343 1.21284 0.94267 0.98204 1.00786 0.90598 0.90667 0.91185 0.85327 0.86412 0.89741 0.91820 0.90707 0.93189 0.90841 0.94111 0.91897 0.90936 0.90864 0.92682 0.93688 0.97272 0.97656 0.91855 0.93697 0.91639 0.89620 0.93099 0.84774 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.50 16 2 C -0.10 -1.68 5.88 -19.87 -0.12 -1.80 16 3 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 4 C -0.13 -2.50 8.04 22.27 0.18 -2.32 16 5 C -0.09 -1.68 4.72 -19.86 -0.09 -1.78 16 6 C -0.07 -1.33 4.84 29.85 0.14 -1.18 16 7 C -0.07 -1.36 2.24 -10.71 -0.02 -1.39 16 8 C -0.11 -2.51 4.88 30.65 0.15 -2.36 16 9 C 0.06 1.57 5.42 86.33 0.47 2.03 16 10 N -0.55 -16.46 4.53 -896.38 -4.06 -20.52 16 11 C 0.07 1.90 5.39 86.30 0.47 2.37 16 12 C 0.06 1.95 6.13 71.98 0.44 2.39 16 13 O -0.39 -19.11 10.27 -148.98 -1.53 -20.64 16 14 C 0.18 9.37 4.76 71.24 0.34 9.71 16 15 C -0.54 -34.11 9.99 25.60 0.26 -33.85 16 16 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 17 C 0.01 0.60 5.47 84.65 0.46 1.07 16 18 N -0.94 -60.71 13.96 21.45 0.30 -60.41 16 19 Si 0.96 44.43 27.47 68.60 1.88 46.31 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 23 C 0.06 1.39 5.29 86.33 0.46 1.85 16 24 C -0.11 -2.43 5.38 30.65 0.16 -2.27 16 25 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 26 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.12 2.37 8.04 -2.91 -0.02 2.35 16 32 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 33 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.61 6.45 -2.39 -0.02 1.59 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 39 H 0.07 2.16 7.79 -2.39 -0.02 2.14 16 40 H 0.07 1.62 8.00 -2.38 -0.02 1.60 16 41 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.04 1.49 6.71 -2.39 -0.02 1.47 16 43 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 44 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 45 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 46 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 47 H 0.07 1.71 6.65 -2.39 -0.02 1.70 16 48 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 51 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -73.77 398.88 2.05 -71.72 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.81 Total: 17.29 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 4.65 Total: -33.75 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.76 Total: -80.93 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.53 Total: -20.64 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -73.77 2.05 -71.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343894758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.103 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds