Wall clock time and date at job start Tue Mar 31 2020 11:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47289 * 270.02764 * 15 14 13 17 17 C 1.46895 * 111.00328 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47381 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.54244 * 108.89201 * 296.39735 * 19 18 17 21 21 C 1.50558 * 108.48296 * 159.18094 * 20 19 18 22 22 C 1.54062 * 112.41990 * 94.26661 * 21 20 19 23 23 C 1.54078 * 112.81035 * 318.28166 * 22 21 20 24 24 C 1.50475 * 112.49575 * 318.28042 * 23 22 21 25 25 C 1.45534 * 108.89566 * 173.60973 * 19 18 17 26 26 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 30 30 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 1.00897 * 111.00096 * 56.03882 * 16 15 14 34 34 H 1.08997 * 109.47200 * 300.00449 * 17 16 15 35 35 H 1.09005 * 109.47043 * 59.99675 * 17 16 15 36 36 H 1.08994 * 109.47463 * 299.99903 * 18 17 16 37 37 H 1.08998 * 109.47215 * 60.00319 * 18 17 16 38 38 H 1.08996 * 108.87225 * 54.99866 * 19 18 17 39 39 H 1.08994 * 109.62981 * 278.97276 * 20 19 18 40 40 H 1.09000 * 109.63385 * 39.55189 * 20 19 18 41 41 H 1.09001 * 108.92073 * 333.50782 * 21 20 19 42 42 H 1.09000 * 108.83397 * 214.96515 * 21 20 19 43 43 H 1.08998 * 108.81647 * 197.42220 * 22 21 20 44 44 H 1.08992 * 108.72844 * 79.07456 * 22 21 20 45 45 H 1.09005 * 108.87183 * 197.50404 * 23 22 21 46 46 H 1.08995 * 108.87878 * 79.06488 * 23 22 21 47 47 H 1.08999 * 109.62859 * 334.44819 * 24 23 22 48 48 H 1.08994 * 109.62908 * 213.86588 * 24 23 22 49 49 H 1.09003 * 108.89282 * 303.43751 * 25 19 18 50 50 H 1.08997 * 108.90069 * 62.02876 * 25 19 18 51 51 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0846 -3.8569 0.8687 17 6 9.5490 -3.9303 0.7785 18 6 10.1430 -4.0159 2.1858 19 6 11.6683 -4.0917 2.0919 20 6 12.0597 -5.3938 1.3635 21 6 13.4559 -5.2369 0.8225 22 6 14.5242 -5.7929 1.7832 23 6 14.2444 -5.4398 3.2567 24 6 13.7698 -4.0223 3.4288 25 6 12.2273 -4.0193 3.4336 26 6 5.3550 -2.4724 -0.2267 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2703 -5.7081 -0.1879 30 1 5.7198 -5.8205 -0.4034 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.7147 -4.6408 1.3851 34 1 9.8340 -4.8149 0.2090 35 1 9.9274 -3.0388 0.2783 36 1 9.8581 -3.1310 2.7549 37 1 9.7648 -4.9072 2.6863 38 1 12.0286 -3.2414 1.5129 39 1 12.0283 -6.2286 2.0636 40 1 11.3676 -5.5757 0.5412 41 1 13.6519 -4.1784 0.6516 42 1 13.5266 -5.7661 -0.1278 43 1 15.4956 -5.3857 1.5025 44 1 14.5557 -6.8777 1.6817 45 1 15.1598 -5.5776 3.8323 46 1 13.4821 -6.1164 3.6428 47 1 14.1346 -3.4112 2.6033 48 1 14.1396 -3.6245 4.3738 49 1 11.8777 -3.1048 3.9128 50 1 11.8759 -4.8755 4.0092 51 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347167407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:02 Heat of formation + Delta-G solvation = -34.129740 kcal Electronic energy + Delta-G solvation = -25619.893573 eV Core-core repulsion = 22097.326971 eV Total energy + Delta-G solvation = -3522.566602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.71724 -39.19802 -37.26145 -35.95451 -33.89030 -32.49054 -32.35801 -30.97323 -29.41179 -28.31332 -25.66705 -25.24753 -24.75938 -23.54931 -21.79102 -21.61512 -20.61943 -20.30163 -19.58862 -17.71426 -17.10119 -16.25929 -16.00190 -15.35227 -15.10877 -15.05345 -14.87483 -14.54676 -14.23556 -13.99319 -13.78735 -13.70212 -13.30939 -13.26615 -12.96220 -12.75608 -12.47488 -12.37395 -12.33693 -12.17341 -11.91782 -11.65348 -11.33216 -11.19534 -11.00631 -10.85242 -10.79107 -10.77293 -10.69675 -10.67462 -10.65875 -10.43531 -10.31853 -10.11300 -9.36640 -8.85608 -8.39526 -8.11858 -7.35607 -6.39122 -4.05764 2.05455 2.28163 3.24289 3.27857 3.43607 4.06689 4.26475 4.26608 4.40630 4.47932 4.63995 4.73531 4.77632 4.81629 4.89623 4.95380 4.99065 5.07376 5.12223 5.15843 5.24818 5.33306 5.40759 5.44707 5.48050 5.51860 5.64219 5.65104 5.69887 5.75071 5.82143 5.83632 5.84634 5.85354 5.90166 5.90317 5.96130 6.02928 6.10306 6.14369 6.21044 6.24233 6.29665 6.55874 6.81351 7.03931 7.14513 7.22462 7.32786 7.44444 7.62603 7.82821 8.06490 8.96436 9.59540 10.68594 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002006 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.191672 B =13956.465163 C =14768.910635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.157 3.843 11 C -0.219 4.219 12 C -0.078 4.078 13 C -0.199 4.199 14 C -0.050 4.050 15 C 0.107 3.893 16 N -0.684 5.684 17 C 0.057 3.943 18 C -0.116 4.116 19 C -0.083 4.083 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.167 4.167 27 H 0.279 0.721 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.342 0.658 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.866 -11.383 3.595 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.123 6.123 10 C 0.105 3.895 11 C -0.238 4.238 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.050 4.050 15 C -0.022 4.022 16 N -0.315 5.315 17 C -0.072 4.072 18 C -0.154 4.154 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.187 4.187 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 26.746 -10.324 3.713 28.909 hybrid contribution 0.127 -0.308 -0.329 0.468 sum 26.872 -10.632 3.384 29.097 Atomic orbital electron populations 1.69649 1.05554 1.28429 1.48244 1.24463 0.95029 0.98820 0.95728 0.86183 0.80394 0.81427 0.78934 1.19925 1.20819 1.18287 1.20761 0.76931 0.96590 1.52151 0.87688 1.83576 1.22549 1.25656 1.80542 1.19102 0.91662 0.85527 0.93163 1.21302 1.01151 0.91968 1.09393 1.20746 0.94161 0.96711 0.97961 1.20487 0.93954 0.96562 1.10853 1.19163 0.93551 0.92661 0.99649 1.20786 0.91061 1.00568 0.89761 1.60469 1.04420 1.49829 1.16810 1.22068 0.87905 1.00256 0.96935 1.21695 0.94151 1.02619 0.96887 1.20072 0.95084 0.98073 0.96944 1.21520 0.96221 0.97579 1.00097 1.21351 0.94746 1.01341 0.98213 1.21912 0.98467 1.00426 0.94637 1.21344 1.00953 0.97114 0.96214 1.21326 0.95666 0.96906 1.01610 1.20531 0.95146 1.02203 0.97171 1.20021 0.91625 0.97394 1.09628 0.91104 0.85039 0.87278 0.87896 0.94875 0.90573 0.84036 0.95213 0.91259 0.90982 0.92148 0.91400 0.91782 0.91491 0.92075 0.92546 0.92550 0.92538 0.92663 0.92101 0.91678 0.92125 0.92131 0.92183 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.48 0.77 -24.86 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.96 28.62 -169.99 -4.86 17.09 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.39 -11.08 9.95 30.89 0.31 -10.77 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 9 O -0.22 -5.85 8.59 0.05 0.00 -5.85 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.22 -4.78 9.17 -39.40 -0.36 -5.14 16 12 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.20 -3.32 9.70 -39.54 -0.38 -3.70 16 14 C -0.05 -0.85 5.39 -104.65 -0.56 -1.41 16 15 C 0.11 1.45 5.81 -4.98 -0.03 1.42 16 16 N -0.68 -8.58 6.49 -115.06 -0.75 -9.33 16 17 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 18 C -0.12 -1.01 4.86 -26.73 -0.13 -1.14 16 19 C -0.08 -0.61 1.71 -93.49 -0.16 -0.77 16 20 C -0.12 -0.81 4.91 -27.30 -0.13 -0.95 16 21 C -0.12 -0.77 5.32 -27.40 -0.15 -0.92 16 22 C -0.12 -0.71 5.85 -25.61 -0.15 -0.86 16 23 C -0.12 -0.72 5.31 -27.43 -0.15 -0.87 16 24 C -0.12 -0.75 5.61 -27.34 -0.15 -0.90 16 25 C -0.11 -0.79 4.44 -29.60 -0.13 -0.93 16 26 C -0.17 -3.39 9.65 -39.39 -0.38 -3.77 16 27 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.13 3.01 5.64 -52.48 -0.30 2.72 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.10 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.03 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.34 4.14 8.72 -39.29 -0.34 3.80 16 34 H 0.03 0.27 6.14 -51.93 -0.32 -0.04 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 7.46 -51.93 -0.39 0.14 16 39 H 0.06 0.46 6.97 -51.93 -0.36 0.10 16 40 H 0.07 0.49 5.82 -51.93 -0.30 0.19 16 41 H 0.06 0.41 6.63 -51.93 -0.34 0.07 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.39 6.62 -51.93 -0.34 0.04 16 47 H 0.06 0.43 6.98 -51.93 -0.36 0.07 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.44 8.04 -51.93 -0.42 0.03 16 50 H 0.06 0.43 7.46 -51.93 -0.39 0.04 16 51 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -29.02 389.92 -11.07 -40.09 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.77 Total: 3.85 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -3.33 Total: -26.87 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.03 Total: -34.19 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: 0.00 Total: -5.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.86 Total: 17.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.02 -11.07 -40.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347167407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.959 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds