Wall clock time and date at job start Tue Mar 31 2020 11:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47289 * 270.02764 * 15 14 13 17 17 C 1.46895 * 111.00328 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47381 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.54244 * 108.89201 * 296.39735 * 19 18 17 21 21 C 1.50558 * 108.48296 * 159.18094 * 20 19 18 22 22 C 1.54062 * 112.41990 * 94.26661 * 21 20 19 23 23 C 1.54078 * 112.81035 * 318.28166 * 22 21 20 24 24 C 1.50475 * 112.49575 * 318.28042 * 23 22 21 25 25 C 1.45534 * 108.89566 * 173.60973 * 19 18 17 26 26 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 30 30 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 1.00897 * 111.00096 * 56.03882 * 16 15 14 34 34 H 1.08997 * 109.47200 * 300.00449 * 17 16 15 35 35 H 1.09005 * 109.47043 * 59.99675 * 17 16 15 36 36 H 1.08994 * 109.47463 * 299.99903 * 18 17 16 37 37 H 1.08998 * 109.47215 * 60.00319 * 18 17 16 38 38 H 1.08996 * 108.87225 * 54.99866 * 19 18 17 39 39 H 1.08994 * 109.62981 * 278.97276 * 20 19 18 40 40 H 1.09000 * 109.63385 * 39.55189 * 20 19 18 41 41 H 1.09001 * 108.92073 * 333.50782 * 21 20 19 42 42 H 1.09000 * 108.83397 * 214.96515 * 21 20 19 43 43 H 1.08998 * 108.81647 * 197.42220 * 22 21 20 44 44 H 1.08992 * 108.72844 * 79.07456 * 22 21 20 45 45 H 1.09005 * 108.87183 * 197.50404 * 23 22 21 46 46 H 1.08995 * 108.87878 * 79.06488 * 23 22 21 47 47 H 1.08999 * 109.62859 * 334.44819 * 24 23 22 48 48 H 1.08994 * 109.62908 * 213.86588 * 24 23 22 49 49 H 1.09003 * 108.89282 * 303.43751 * 25 19 18 50 50 H 1.08997 * 108.90069 * 62.02876 * 25 19 18 51 51 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0846 -3.8569 0.8687 17 6 9.5490 -3.9303 0.7785 18 6 10.1430 -4.0159 2.1858 19 6 11.6683 -4.0917 2.0919 20 6 12.0597 -5.3938 1.3635 21 6 13.4559 -5.2369 0.8225 22 6 14.5242 -5.7929 1.7832 23 6 14.2444 -5.4398 3.2567 24 6 13.7698 -4.0223 3.4288 25 6 12.2273 -4.0193 3.4336 26 6 5.3550 -2.4724 -0.2267 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2703 -5.7081 -0.1879 30 1 5.7198 -5.8205 -0.4034 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.7147 -4.6408 1.3851 34 1 9.8340 -4.8149 0.2090 35 1 9.9274 -3.0388 0.2783 36 1 9.8581 -3.1310 2.7549 37 1 9.7648 -4.9072 2.6863 38 1 12.0286 -3.2414 1.5129 39 1 12.0283 -6.2286 2.0636 40 1 11.3676 -5.5757 0.5412 41 1 13.6519 -4.1784 0.6516 42 1 13.5266 -5.7661 -0.1278 43 1 15.4956 -5.3857 1.5025 44 1 14.5557 -6.8777 1.6817 45 1 15.1598 -5.5776 3.8323 46 1 13.4821 -6.1164 3.6428 47 1 14.1346 -3.4112 2.6033 48 1 14.1396 -3.6245 4.3738 49 1 11.8777 -3.1048 3.9128 50 1 11.8759 -4.8755 4.0092 51 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347167407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:01 Heat of formation + Delta-G solvation = -48.885883 kcal Electronic energy + Delta-G solvation = -25620.533447 eV Core-core repulsion = 22097.326971 eV Total energy + Delta-G solvation = -3523.206477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91537 -40.26873 -38.76155 -37.03737 -34.70174 -34.42159 -33.02782 -32.19985 -30.98491 -29.28527 -27.30422 -26.30031 -25.60995 -24.38711 -23.29223 -22.41349 -22.05783 -21.05668 -20.09362 -19.65633 -18.84976 -17.05668 -16.84699 -16.75175 -16.47557 -16.06341 -15.80827 -15.70440 -15.56921 -15.25570 -14.97650 -14.80302 -14.43163 -14.36988 -14.15443 -13.89280 -13.78581 -13.42096 -13.24023 -13.06877 -12.97824 -12.85324 -12.59528 -12.46420 -12.37439 -12.25357 -11.94171 -11.87644 -11.51371 -11.36063 -11.29224 -11.23427 -11.16827 -11.07669 -10.91933 -10.88665 -9.71259 -9.28887 -9.04936 -8.50010 -6.22464 0.50011 0.69245 1.30602 1.34683 1.51745 2.28094 2.73401 3.03418 3.08277 3.42275 3.70903 3.85802 3.95000 3.96924 4.09118 4.16432 4.20473 4.30638 4.33777 4.40701 4.44384 4.45402 4.48984 4.57326 4.58759 4.66599 4.67120 4.74107 4.75613 4.92779 4.97016 5.01783 5.04376 5.16351 5.17665 5.25003 5.26080 5.30217 5.35944 5.39762 5.39909 5.40070 5.44349 5.56857 5.64433 5.65700 5.67590 5.73650 5.78683 5.91750 6.11327 6.26676 6.50654 6.84548 7.59991 8.61612 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002006 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.191672 B =13956.465163 C =14768.910635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.398 4.398 8 H 0.081 0.919 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.174 4.174 14 C -0.040 4.040 15 C 0.112 3.888 16 N -0.699 5.699 17 C 0.062 3.938 18 C -0.110 4.110 19 C -0.076 4.076 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.173 4.173 27 H 0.284 0.716 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.345 0.655 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.076 -13.086 3.297 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.099 0.901 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.258 4.258 12 C -0.094 4.094 13 C -0.193 4.193 14 C -0.040 4.040 15 C -0.017 4.017 16 N -0.330 5.330 17 C -0.067 4.067 18 C -0.148 4.148 19 C -0.095 4.095 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.193 4.193 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 29.986 -12.066 3.414 32.502 hybrid contribution -0.668 -0.086 -0.239 0.715 sum 29.318 -12.151 3.175 31.895 Atomic orbital electron populations 1.69729 1.06810 1.29538 1.50282 1.25270 0.95905 1.02099 0.95618 0.85227 0.78734 0.77525 0.79288 1.19013 1.19073 1.18991 1.20708 0.78113 0.96107 1.52556 0.90145 1.83518 1.21235 1.27471 1.83278 1.19650 0.93093 0.85186 0.95217 1.21333 1.00215 0.93391 1.10851 1.21119 0.95427 0.96232 0.96597 1.21027 0.93152 0.98289 1.06784 1.19619 0.95855 0.91448 0.97120 1.20755 0.88196 1.01949 0.90754 1.60416 1.05946 1.50425 1.16253 1.22074 0.86223 1.00737 0.97632 1.21632 0.95013 1.01995 0.96125 1.20010 0.94036 0.98319 0.97130 1.21477 0.96484 0.97094 0.99922 1.21341 0.94566 1.01257 0.98457 1.21911 0.98472 1.00597 0.94430 1.21335 1.01108 0.96726 0.96390 1.21308 0.95060 0.97186 1.01750 1.20515 0.95690 1.01868 0.96912 1.20265 0.90273 0.99149 1.09599 0.90594 0.87505 0.84092 0.83398 0.92224 0.90487 0.83643 0.93709 0.91638 0.92469 0.91912 0.91753 0.91807 0.91520 0.92350 0.92221 0.92254 0.92269 0.92161 0.92347 0.91839 0.91801 0.92721 0.92250 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.91 13.96 21.61 0.30 -55.61 16 2 C 0.01 0.55 5.49 84.83 0.47 1.02 16 3 Si 0.97 46.55 28.62 68.60 1.96 48.52 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.40 -24.04 9.95 67.92 0.68 -23.36 16 8 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 9 O -0.25 -13.88 8.59 -22.74 -0.20 -14.08 16 10 C 0.12 5.67 6.65 22.58 0.15 5.82 16 11 C -0.24 -10.68 9.17 22.39 0.21 -10.47 16 12 C -0.08 -2.60 10.04 22.25 0.22 -2.37 16 13 C -0.17 -5.06 9.70 22.30 0.22 -4.84 16 14 C -0.04 -1.24 5.39 -19.88 -0.11 -1.35 16 15 C 0.11 2.61 5.81 85.56 0.50 3.10 16 16 N -0.70 -15.30 6.49 -517.95 -3.36 -18.66 16 17 C 0.06 1.04 5.46 86.30 0.47 1.51 16 18 C -0.11 -1.70 4.86 30.59 0.15 -1.55 16 19 C -0.08 -0.98 1.71 -12.65 -0.02 -1.00 16 20 C -0.11 -1.30 4.91 30.23 0.15 -1.15 16 21 C -0.12 -1.28 5.32 30.16 0.16 -1.12 16 22 C -0.12 -1.17 5.85 31.32 0.18 -0.99 16 23 C -0.12 -1.22 5.31 30.14 0.16 -1.06 16 24 C -0.12 -1.29 5.61 30.20 0.17 -1.12 16 25 C -0.11 -1.41 4.44 28.73 0.13 -1.29 16 26 C -0.17 -6.95 9.65 22.39 0.22 -6.73 16 27 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.11 5.26 5.64 -2.91 -0.02 5.24 16 29 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.06 1.12 8.09 -2.38 -0.02 1.10 16 32 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 33 H 0.35 7.12 8.72 -89.70 -0.78 6.33 16 34 H 0.04 0.65 6.14 -2.39 -0.01 0.63 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.06 8.05 -2.39 -0.02 1.04 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.89 7.46 -2.39 -0.02 0.87 16 39 H 0.06 0.75 6.97 -2.39 -0.02 0.74 16 40 H 0.07 0.78 5.82 -2.39 -0.01 0.76 16 41 H 0.06 0.67 6.63 -2.39 -0.02 0.65 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.06 0.64 6.62 -2.39 -0.02 0.62 16 47 H 0.06 0.73 6.98 -2.39 -0.02 0.72 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.05 0.75 8.04 -2.39 -0.02 0.73 16 50 H 0.06 0.76 7.46 -2.39 -0.02 0.74 16 51 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -65.92 389.92 2.92 -63.00 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.12 Total: 23.78 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 4.09 Total: -46.95 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -3.06 Total: -74.27 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.20 Total: -14.08 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.96 Total: 48.52 kcal Total: -65.92 2.92 -63.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347167407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.115 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds