Wall clock time and date at job start Tue Mar 31 2020 11:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00252 * 2 1 4 4 H 1.48495 * 109.46970 * 270.00264 * 3 2 1 5 5 H 1.48504 * 109.46943 * 30.00296 * 3 2 1 6 6 H 1.48503 * 109.47040 * 150.00196 * 3 2 1 7 7 C 1.37882 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99668 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.47064 * 300.00396 * 9 7 2 11 11 O 1.42902 * 109.46980 * 60.00013 * 9 7 2 12 12 C 1.53000 * 109.47241 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47184 * 179.97438 * 12 9 7 14 14 C 1.46903 * 110.99746 * 180.02562 * 13 12 9 15 15 H 1.08991 * 109.47185 * 35.00295 * 14 13 12 16 16 C 1.53008 * 109.46731 * 155.00492 * 14 13 12 17 17 C 1.52995 * 109.46701 * 294.99692 * 16 14 13 18 18 C 1.53002 * 109.46925 * 175.00108 * 17 16 14 19 19 C 1.52997 * 109.47415 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.47164 * 300.00027 * 19 18 17 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 18 22 22 C 1.52996 * 109.47577 * 295.00082 * 17 16 14 23 23 C 1.50695 * 109.47148 * 275.00078 * 14 13 12 24 24 C 1.38234 * 120.00480 * 319.72783 * 23 14 13 25 25 C 1.38235 * 120.00353 * 179.78756 * 24 23 14 26 26 C 1.38236 * 119.99776 * 0.44076 * 25 24 23 27 27 C 1.38233 * 120.00085 * 359.81616 * 26 25 24 28 28 C 1.38238 * 119.99796 * 140.00000 * 23 14 13 29 29 H 0.97005 * 120.00485 * 359.97438 * 1 2 3 30 30 H 0.96703 * 113.99618 * 60.00089 * 11 9 7 31 31 H 1.09006 * 109.46697 * 59.99984 * 12 9 7 32 32 H 1.08996 * 109.47154 * 300.00411 * 12 9 7 33 33 H 1.00899 * 110.99694 * 56.05373 * 13 12 9 34 34 H 1.08998 * 109.46539 * 175.00186 * 16 14 13 35 35 H 1.08991 * 109.47217 * 55.00214 * 16 14 13 36 36 H 1.08996 * 109.47575 * 55.00652 * 17 16 14 37 37 H 1.09000 * 109.46986 * 60.00086 * 18 17 16 38 38 H 1.09001 * 109.47601 * 300.00809 * 18 17 16 39 39 H 1.09001 * 109.46922 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.47140 * 59.99976 * 19 18 17 41 41 H 1.08993 * 109.46955 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47050 * 300.00004 * 20 19 18 43 43 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 44 44 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 45 45 H 1.09000 * 109.47054 * 300.00355 * 22 17 16 46 46 H 1.09001 * 109.46997 * 60.00088 * 22 17 16 47 47 H 1.08003 * 119.99526 * 359.97438 * 24 23 14 48 48 H 1.08003 * 120.00196 * 180.27803 * 25 24 23 49 49 H 1.07996 * 120.00009 * 179.83335 * 26 25 24 50 50 H 1.08001 * 120.00157 * 180.02562 * 27 26 25 51 51 H 1.07995 * 120.00066 * 359.97438 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 1 3.8744 -0.6801 -0.8911 11 8 3.9882 -0.5208 1.1656 12 6 4.0215 -2.6367 -0.0010 13 7 5.4904 -2.6367 -0.0022 14 6 6.0168 -4.0082 -0.0027 15 1 5.3607 -4.6489 -0.5917 16 6 7.4197 -4.0157 -0.6134 17 6 7.3364 -3.6135 -2.0872 18 6 8.7484 -3.4998 -2.6654 19 6 8.6652 -3.0971 -4.1390 20 6 7.8806 -4.1576 -4.9141 21 6 6.4687 -4.2712 -4.3359 22 6 6.5520 -4.6744 -2.8619 23 6 6.0823 -4.5216 1.4126 24 6 6.4990 -3.6865 2.4323 25 6 6.5549 -4.1563 3.7312 26 6 6.2028 -5.4638 4.0090 27 6 5.7911 -6.3005 2.9885 28 6 5.7310 -5.8295 1.6903 29 1 -0.4851 0.8400 0.0004 30 1 3.7032 -0.9246 1.9968 31 1 3.6577 -3.1507 -0.8908 32 1 3.6584 -3.1503 0.8892 33 1 5.8526 -2.1104 0.7788 34 1 7.8454 -5.0159 -0.5332 35 1 8.0525 -3.3075 -0.0787 36 1 6.8301 -2.6522 -2.1735 37 1 9.2548 -4.4612 -2.5791 38 1 9.3073 -2.7441 -2.1135 39 1 9.6712 -3.0165 -4.5510 40 1 8.1590 -2.1356 -4.2249 41 1 7.8218 -3.8708 -5.9640 42 1 8.3869 -5.1190 -4.8283 43 1 5.9624 -3.3097 -4.4218 44 1 5.9098 -5.0270 -4.8878 45 1 7.0584 -5.6358 -2.7757 46 1 5.5461 -4.7554 -2.4500 47 1 6.7780 -2.6661 2.2146 48 1 6.8762 -3.5025 4.5285 49 1 6.2490 -5.8316 5.0234 50 1 5.5156 -7.3220 3.2056 51 1 5.4093 -6.4831 0.8930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354473311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:58 Heat of formation + Delta-G solvation = -74.658210 kcal Electronic energy + Delta-G solvation = -27511.210035 eV Core-core repulsion = 23986.885986 eV Total energy + Delta-G solvation = -3524.324048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80871 -39.40283 -38.47475 -36.63897 -34.42892 -33.42880 -32.04822 -31.77293 -31.53067 -30.04267 -28.27364 -25.84225 -24.64174 -23.47143 -23.31568 -22.29293 -22.05589 -20.93052 -20.44490 -19.35374 -18.13065 -16.86851 -16.73887 -16.41295 -16.31544 -16.09309 -15.84353 -15.32296 -15.23839 -15.00336 -14.82880 -14.71938 -14.63761 -14.26979 -14.13889 -13.75508 -13.64259 -13.18603 -13.15072 -12.98582 -12.86428 -12.75420 -12.70746 -12.34700 -12.13932 -11.93929 -11.87609 -11.82436 -11.68738 -11.59043 -11.18785 -11.09407 -10.84419 -10.81497 -10.72307 -10.17668 -9.80832 -9.57633 -9.24742 -8.35562 -6.50183 0.46569 0.51554 1.40732 1.45209 1.75357 2.44098 2.89651 3.02514 3.31163 3.66930 3.90338 3.94315 4.01123 4.04305 4.06791 4.15355 4.28881 4.32249 4.33771 4.43700 4.50022 4.50237 4.60933 4.62848 4.70543 4.72727 4.73864 4.77849 4.81657 4.89995 4.99774 5.07504 5.11040 5.15278 5.18819 5.19877 5.23825 5.33709 5.40904 5.44954 5.46707 5.49993 5.54327 5.59394 5.60934 5.63708 5.67179 5.80314 6.07238 6.14003 6.21894 6.55674 6.65923 7.16302 7.32975 8.78834 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007859 B = 0.004968 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3561.717100 B = 5634.411021 C = 8187.100131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.033 0.967 9 C 0.208 3.792 10 H 0.053 0.947 11 O -0.579 6.579 12 C 0.067 3.933 13 N -0.670 5.670 14 C 0.126 3.874 15 H 0.077 0.923 16 C -0.083 4.083 17 C -0.077 4.077 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.132 4.132 27 C -0.125 4.125 28 C -0.129 4.129 29 H 0.266 0.734 30 H 0.364 0.636 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.344 0.656 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.122 0.878 48 H 0.137 0.863 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.620 -12.485 0.099 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.170 4.170 3 Si 0.765 3.235 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.125 1.125 7 C -0.604 4.604 8 H 0.051 0.949 9 C 0.150 3.850 10 H 0.071 0.929 11 O -0.385 6.385 12 C -0.063 4.063 13 N -0.302 5.302 14 C 0.016 3.984 15 H 0.095 0.905 16 C -0.121 4.121 17 C -0.096 4.096 18 C -0.146 4.146 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.150 4.150 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.075 0.925 30 H 0.211 0.789 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.165 0.835 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.140 0.860 48 H 0.155 0.845 49 H 0.159 0.841 50 H 0.157 0.843 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.812 -11.923 -1.044 24.008 hybrid contribution -1.258 0.139 1.173 1.726 sum 19.553 -11.784 0.128 22.830 Atomic orbital electron populations 1.70087 1.08552 1.28381 1.50977 1.25855 0.95237 1.03624 0.92324 0.85964 0.81974 0.77265 0.78323 1.21344 1.22529 1.12462 1.21833 0.92522 0.93171 1.52830 0.94889 1.19529 0.90254 0.89552 0.85665 0.92884 1.86609 1.77318 1.57948 1.16636 1.22176 0.87587 0.97578 0.98944 1.60671 1.06625 1.12695 1.50252 1.20698 0.97570 0.89344 0.90765 0.90516 1.21478 0.93999 1.01305 0.95310 1.21003 0.95994 0.99182 0.93393 1.21542 0.96060 1.01483 0.95543 1.21530 1.00246 0.98478 0.95453 1.21501 0.95180 0.99452 0.99012 1.21539 0.97427 1.00882 0.96070 1.21569 0.99590 0.98627 0.94931 1.20839 0.99077 0.94879 0.97001 1.21095 1.00471 0.99811 0.93308 1.21395 0.99688 0.96492 0.96580 1.21454 0.99406 0.93981 1.00163 1.21434 0.99384 1.00793 0.92705 1.21262 1.00512 0.95332 0.97657 0.92481 0.78912 0.92363 0.96817 0.83455 0.91169 0.92102 0.91912 0.91523 0.92259 0.91179 0.93167 0.91891 0.91390 0.93527 0.91970 0.91509 0.93467 0.86034 0.84502 0.84085 0.84254 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 2 C 0.03 1.70 5.47 84.66 0.46 2.17 16 3 Si 0.94 45.70 26.99 68.60 1.85 47.55 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.20 -9.32 5.31 99.48 0.53 -8.79 16 7 C -0.57 -32.05 9.34 25.60 0.24 -31.81 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 9 C 0.21 9.56 2.58 29.85 0.08 9.64 16 10 H 0.05 2.57 7.57 -2.39 -0.02 2.55 16 11 O -0.58 -24.69 9.48 -148.98 -1.41 -26.10 16 12 C 0.07 2.60 5.12 86.30 0.44 3.04 16 13 N -0.67 -21.06 5.60 -495.46 -2.78 -23.84 16 14 C 0.13 3.29 2.09 44.17 0.09 3.39 16 15 H 0.08 2.13 5.86 -2.39 -0.01 2.11 16 16 C -0.08 -1.83 4.34 30.60 0.13 -1.70 16 17 C -0.08 -1.73 2.13 -10.80 -0.02 -1.76 16 18 C -0.11 -2.05 5.20 30.59 0.16 -1.89 16 19 C -0.12 -2.18 5.92 30.60 0.18 -2.00 16 20 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 21 C -0.12 -2.57 5.92 30.61 0.18 -2.39 16 22 C -0.11 -2.40 4.97 30.61 0.15 -2.24 16 23 C -0.12 -2.95 4.71 -19.87 -0.09 -3.05 16 24 C -0.13 -3.16 9.11 22.27 0.20 -2.96 16 25 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 26 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 27 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 28 C -0.13 -3.04 9.67 22.27 0.22 -2.82 16 29 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 30 H 0.36 14.02 9.04 -74.06 -0.67 13.35 16 31 H 0.06 2.37 8.05 -2.38 -0.02 2.35 16 32 H 0.01 0.55 8.00 -2.39 -0.02 0.53 16 33 H 0.34 10.71 5.75 -89.69 -0.52 10.20 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.78 7.62 -2.39 -0.02 1.76 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 1.18 6.46 -2.39 -0.02 1.16 16 47 H 0.12 2.93 6.53 -2.91 -0.02 2.91 16 48 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 49 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 50 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 51 H 0.13 2.65 8.04 -2.91 -0.02 2.63 16 Total: -1.00 -65.27 391.16 0.77 -64.50 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.47 Total: 40.15 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 3.27 Total: -43.50 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.48 Total: -82.59 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.41 Total: -26.10 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.85 Total: 47.55 kcal Total: -65.27 0.77 -64.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354473311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.154 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds